Wall clock time and date at job start Fri Apr 10 2020 17:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36739 * 127.13536 * 2 1 4 4 C 1.50696 * 126.34799 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47347 * 269.71384 * 4 3 2 6 6 C 1.52997 * 109.47228 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47201 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99736 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00027 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99789 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99924 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47074 * 90.00384 * 11 9 7 13 13 H 1.48506 * 109.46948 * 210.00188 * 11 9 7 14 14 H 1.48497 * 109.47456 * 330.00119 * 11 9 7 15 15 N 1.30291 * 107.30423 * 179.73453 * 3 2 1 16 16 N 1.28527 * 110.05589 * 0.26507 * 15 3 2 17 17 C 1.31217 * 109.85914 * 359.97438 * 16 15 3 18 18 N 1.38587 * 126.47688 * 180.02562 * 17 16 15 19 19 C 1.47188 * 111.00101 * 250.00906 * 18 17 16 20 20 C 1.52985 * 108.72706 * 54.36790 * 19 18 17 21 21 N 1.46005 * 110.04718 * 50.28894 * 20 19 18 22 22 C 1.33711 * 122.92760 * 341.84223 * 21 20 19 23 23 O 1.21283 * 118.62587 * 181.68155 * 22 21 20 24 24 C 1.46903 * 110.99498 * 12.89757 * 18 17 16 25 25 H 1.08998 * 109.47060 * 84.88150 * 1 2 3 26 26 H 1.08996 * 109.47120 * 204.88408 * 1 2 3 27 27 H 1.08997 * 109.47229 * 324.88357 * 1 2 3 28 28 H 1.09004 * 109.47182 * 149.71121 * 4 3 2 29 29 H 1.09004 * 109.47373 * 29.71668 * 4 3 2 30 30 H 1.08994 * 109.47209 * 59.99660 * 5 4 3 31 31 H 1.09000 * 109.46606 * 299.99909 * 5 4 3 32 32 H 1.09009 * 109.47028 * 299.99687 * 6 5 4 33 33 H 1.08994 * 109.47498 * 59.99598 * 6 5 4 34 34 H 0.96995 * 119.99842 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.59281 * 174.13544 * 19 18 17 36 36 H 1.08996 * 109.59274 * 294.59285 * 19 18 17 37 37 H 1.09001 * 109.37472 * 170.46923 * 20 19 18 38 38 H 1.09000 * 109.37615 * 290.22816 * 20 19 18 39 39 H 0.96996 * 118.53565 * 161.85581 * 21 20 19 40 40 H 1.09000 * 109.38842 * 47.09393 * 24 18 17 41 41 H 1.09002 * 109.38639 * 166.77166 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 -0.0005 5 6 1.7245 3.0255 -1.4432 6 6 1.2901 4.4926 -1.4437 7 6 1.1540 4.9757 -2.8647 8 1 1.3574 4.3037 -3.6853 9 6 0.7698 6.2756 -3.1171 10 7 0.6506 6.6970 -4.3571 11 14 0.4174 7.4376 -1.6977 12 1 1.6662 8.1438 -1.3143 13 1 -0.6053 8.4310 -2.1135 14 1 -0.0891 6.6621 -0.5370 15 7 3.5161 0.6481 0.0058 16 7 3.5212 -0.6372 0.0038 17 6 2.2888 -1.0878 -0.0028 18 7 1.8977 -2.4173 -0.0063 19 6 1.3046 -2.7893 -1.3010 20 6 2.2949 -2.4398 -2.4135 21 7 3.6127 -2.9846 -2.0998 22 6 3.9678 -3.3642 -0.8679 23 8 5.0939 -3.7777 -0.6892 24 6 3.0302 -3.2999 0.3045 25 1 -0.3633 0.0917 -1.0235 26 1 -0.3633 -0.9322 0.4324 27 1 -0.3633 0.8406 0.5911 28 1 2.6094 3.1357 0.5179 29 1 0.9029 2.6297 0.5085 30 1 0.9773 2.4248 -1.9616 31 1 2.6837 2.9308 -1.9521 32 1 0.3310 4.5877 -0.9345 33 1 2.0377 5.0930 -0.9254 34 1 0.3799 7.6113 -4.5347 35 1 1.1013 -3.8601 -1.3157 36 1 0.3771 -2.2367 -1.4504 37 1 1.9441 -2.8614 -3.3554 38 1 2.3663 -1.3562 -2.5068 39 1 4.2594 -3.0750 -2.8170 40 1 3.5629 -2.9128 1.1731 41 1 2.6589 -4.3004 0.5262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121303753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:57 Heat of formation + Delta-G solvation = 25.905029 kcal Electronic energy + Delta-G solvation = -23893.898269 eV Core-core repulsion = 20423.306564 eV Total energy + Delta-G solvation = -3470.591705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.17710 -41.55546 -38.64643 -36.81502 -35.91614 -35.45689 -34.32215 -31.69935 -31.06956 -29.26390 -28.40575 -27.22236 -25.48452 -24.61697 -22.74939 -22.26205 -21.55648 -20.58722 -18.93233 -18.70343 -18.06505 -17.76246 -17.33319 -16.90061 -16.50408 -16.32609 -15.85463 -15.70875 -15.33977 -14.86134 -14.70901 -14.45742 -14.23903 -13.92047 -13.73611 -13.68562 -13.36309 -13.04100 -12.82917 -12.74982 -12.57197 -12.50012 -12.07556 -11.78077 -11.73903 -11.54762 -11.34220 -11.31181 -11.11087 -10.73766 -10.58609 -10.25749 -9.47178 -8.26622 -6.31389 0.67176 1.14493 1.41422 1.42569 1.48696 1.54172 1.71740 2.08654 2.39777 2.59144 3.09656 3.32505 3.33152 3.57089 3.72105 3.80745 3.90075 4.09685 4.16825 4.25100 4.32994 4.40362 4.41450 4.46438 4.53776 4.64714 4.69879 4.76441 4.91326 4.96801 5.06141 5.06875 5.26513 5.36991 5.50414 5.60506 5.66232 5.69029 6.06485 6.15081 6.30345 6.77128 7.03409 7.33378 7.68314 8.90417 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.003348 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.101440 B = 8362.043061 C = 8515.951159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.467 5.467 3 C 0.197 3.803 4 C -0.026 4.026 5 C -0.081 4.081 6 C -0.010 4.010 7 C -0.533 4.533 8 H 0.025 0.975 9 C 0.000 4.000 10 N -0.955 5.955 11 Si 0.953 3.047 12 H -0.272 1.272 13 H -0.287 1.287 14 H -0.233 1.233 15 N -0.331 5.331 16 N -0.355 5.355 17 C 0.341 3.659 18 N -0.429 5.429 19 C 0.035 3.965 20 C 0.075 3.925 21 N -0.715 5.715 22 C 0.502 3.498 23 O -0.598 6.598 24 C 0.062 3.938 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.020 0.980 34 H 0.265 0.735 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.033 0.967 39 H 0.401 0.599 40 H 0.105 0.895 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.589 -22.049 10.746 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.160 5.160 3 C -0.072 4.072 4 C -0.065 4.065 5 C -0.120 4.120 6 C -0.047 4.047 7 C -0.571 4.571 8 H 0.044 0.956 9 C -0.196 4.196 10 N -0.596 5.596 11 Si 0.776 3.224 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.155 1.155 15 N -0.170 5.170 16 N -0.199 5.199 17 C -0.017 4.017 18 N -0.153 5.153 19 C -0.091 4.091 20 C -0.051 4.051 21 N -0.366 5.366 22 C 0.289 3.711 23 O -0.478 6.478 24 C -0.068 4.068 25 H 0.113 0.887 26 H 0.139 0.861 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.131 0.869 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.052 0.948 39 H 0.237 0.763 40 H 0.123 0.877 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.136 -22.187 11.307 25.647 hybrid contribution -0.182 1.095 -1.167 1.611 sum -6.318 -21.092 10.141 24.241 Atomic orbital electron populations 1.22572 0.72289 1.07370 1.05682 1.46215 1.10203 1.04301 1.55313 1.25158 0.86361 0.92747 1.02972 1.20216 1.03891 0.83679 0.98725 1.21200 0.99952 0.96738 0.94067 1.19529 0.97138 0.93380 0.94666 1.21497 1.45572 0.96971 0.93082 0.95647 1.26086 0.94675 1.00265 0.98552 1.70085 1.49831 1.18062 1.21657 0.85616 0.78382 0.78336 0.80049 1.19792 1.21317 1.15526 1.73951 1.19509 1.03143 1.20437 1.74549 1.17970 1.03811 1.23609 1.22701 0.86471 0.88708 1.03805 1.59427 1.28674 0.94940 1.32286 1.23129 0.97413 1.06434 0.82166 1.22220 0.82644 0.97862 1.02326 1.45520 1.17112 1.63969 1.10035 1.21203 0.88636 0.75628 0.85655 1.90736 1.22772 1.49530 1.84748 1.22423 0.88333 1.00495 0.95571 0.88721 0.86125 0.87544 0.88493 0.86863 0.92661 0.94857 0.94437 0.96120 0.92598 0.83918 0.85564 0.85791 0.94813 0.76317 0.87683 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 10.05 127.77 1.28 1.97 16 2 N -0.47 -10.19 3.21 -538.20 -1.73 -11.92 16 3 C 0.20 5.77 7.32 137.64 1.01 6.77 16 4 C -0.03 -0.70 5.59 29.85 0.17 -0.54 16 5 C -0.08 -2.90 5.14 30.59 0.16 -2.74 16 6 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 7 C -0.53 -29.87 9.66 25.60 0.25 -29.63 16 8 H 0.03 1.59 7.99 -2.91 -0.02 1.57 16 9 C 0.00 0.03 5.47 84.66 0.46 0.49 16 10 N -0.96 -59.38 13.96 21.45 0.30 -59.08 16 11 Si 0.95 42.36 27.47 68.60 1.88 44.25 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 14 H -0.23 -9.04 6.54 99.48 0.65 -8.39 16 15 N -0.33 -12.12 12.18 -49.54 -0.60 -12.72 16 16 N -0.36 -11.95 10.52 -58.00 -0.61 -12.56 16 17 C 0.34 8.18 5.26 260.11 1.37 9.55 16 18 N -0.43 -6.57 5.04 -710.45 -3.58 -10.15 16 19 C 0.03 0.29 5.94 86.24 0.51 0.80 16 20 C 0.07 1.04 6.66 86.47 0.58 1.61 16 21 N -0.72 -14.36 5.51 -466.10 -2.57 -16.93 16 22 C 0.50 12.33 6.64 87.68 0.58 12.92 16 23 O -0.60 -20.39 17.82 -3.04 -0.05 -20.45 16 24 C 0.06 1.08 5.58 85.42 0.48 1.56 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.12 0.71 8.11 -2.39 -0.02 0.69 16 27 H 0.11 0.97 7.41 -2.39 -0.02 0.95 16 28 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 29 H 0.11 2.32 7.38 -2.38 -0.02 2.31 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.47 7.20 -2.38 -0.02 1.45 16 33 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.14 0.29 8.08 -2.39 -0.02 0.27 16 36 H 0.13 0.55 7.25 -2.39 -0.02 0.53 16 37 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.03 0.71 7.43 -2.39 -0.02 0.70 16 39 H 0.40 8.08 8.84 -92.71 -0.82 7.26 16 40 H 0.10 2.31 7.84 -2.39 -0.02 2.29 16 41 H 0.17 1.47 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -86.20 336.07 0.17 -86.02 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.17 Total: 11.08 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 6.96 Total: 2.46 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -8.79 Total: -123.36 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.45 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.88 Total: 44.25 kcal Total: -86.20 0.17 -86.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121303753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.927 kcal (2) G-P(sol) polarization free energy of solvation -86.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds