Wall clock time and date at job start Fri Apr 10 2020 17:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21287 * 120.00197 * 2 1 4 4 N 1.34782 * 120.00480 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00326 * 180.02562 * 4 2 1 6 6 H 1.09000 * 107.87803 * 328.45028 * 5 4 2 7 7 C 1.50954 * 108.02916 * 84.99797 * 5 4 2 8 8 C 1.53673 * 110.95237 * 194.24478 * 7 5 4 9 9 C 1.51884 * 106.90354 * 280.91649 * 8 7 5 10 10 N 1.29901 * 127.80454 * 245.18379 * 9 8 7 11 11 N 1.29023 * 109.22484 * 179.74832 * 10 9 8 12 12 C 1.30974 * 109.71087 * 0.04903 * 11 10 9 13 13 C 1.50698 * 126.61655 * 180.02562 * 12 11 10 14 14 N 1.46490 * 109.47266 * 90.02065 * 13 12 11 15 15 C 1.36935 * 120.00121 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 N 1.34599 * 124.58015 * 65.36317 * 9 8 7 24 24 C 1.47497 * 125.02851 * 359.96278 * 23 9 8 25 25 C 1.50864 * 107.99898 * 211.91734 * 5 4 2 26 26 H 1.09008 * 109.47125 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47700 * 300.00255 * 1 2 3 28 28 H 1.08998 * 109.47246 * 60.00288 * 1 2 3 29 29 H 0.97005 * 119.99212 * 0.02562 * 4 2 1 30 30 H 1.09000 * 109.17787 * 73.87043 * 7 5 4 31 31 H 1.08998 * 109.14449 * 314.59885 * 7 5 4 32 32 H 1.09005 * 109.96128 * 161.56921 * 8 7 5 33 33 H 1.08999 * 109.96889 * 40.26739 * 8 7 5 34 34 H 1.09003 * 109.46558 * 330.01942 * 13 12 11 35 35 H 1.08999 * 109.47347 * 210.02982 * 13 12 11 36 36 H 0.97000 * 120.00577 * 0.02562 * 14 13 12 37 37 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 38 38 H 1.08994 * 109.91897 * 174.98059 * 24 23 9 39 39 H 1.09004 * 109.77131 * 53.88249 * 24 23 9 40 40 H 1.08998 * 109.14329 * 286.00114 * 25 5 4 41 41 H 1.08998 * 109.14535 * 45.14948 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 3.9807 -0.2832 -0.5418 7 6 4.1125 -1.0417 1.4312 8 6 5.6053 -0.6818 1.4926 9 6 6.3794 -1.9654 1.2480 10 7 7.1597 -2.5945 2.0744 11 7 7.6289 -3.6485 1.4969 12 6 7.1624 -3.7278 0.2757 13 6 7.4634 -4.8059 -0.7333 14 7 6.4825 -5.8859 -0.6013 15 6 6.5557 -6.9812 -1.4198 16 1 7.3368 -7.0491 -2.1625 17 6 5.6259 -8.0044 -1.2951 18 7 4.6736 -7.9215 -0.3903 19 14 5.7263 -9.4989 -2.4113 20 1 4.6262 -10.4395 -2.0792 21 1 5.5986 -9.0687 -3.8270 22 1 7.0333 -10.1761 -2.2157 23 7 6.3672 -2.6567 0.0932 24 6 5.6036 -2.2797 -1.1111 25 6 4.1124 -2.3852 -0.7570 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6959 -2.0073 0.0005 30 1 3.9512 -1.9894 1.9450 31 1 3.5355 -0.2620 1.9284 32 1 5.8512 -0.2804 2.4757 33 1 5.8439 0.0496 0.7205 34 1 8.4640 -5.2002 -0.5561 35 1 7.4105 -4.3879 -1.7386 36 1 5.7807 -5.8249 0.0655 37 1 4.6218 -7.1456 0.1896 38 1 5.8404 -2.9600 -1.9291 39 1 5.8463 -1.2559 -1.3961 40 1 3.9527 -3.2714 -0.1428 41 1 3.5325 -2.4785 -1.6753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127919290.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:04 Heat of formation + Delta-G solvation = 25.249828 kcal Electronic energy + Delta-G solvation = -23976.493135 eV Core-core repulsion = 20505.873018 eV Total energy + Delta-G solvation = -3470.620117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.43473 -40.98928 -38.51069 -37.22790 -35.80074 -34.72445 -33.31250 -32.54659 -30.94821 -30.19201 -27.62863 -26.72532 -25.43270 -24.92309 -22.57430 -21.82915 -21.66535 -21.17037 -19.56605 -18.42779 -17.82821 -17.58410 -17.24733 -16.80415 -16.33836 -16.11109 -15.73572 -15.31581 -15.12334 -14.99984 -14.64326 -14.50030 -14.24897 -13.98599 -13.58573 -13.36317 -13.05551 -13.00042 -12.79198 -12.73952 -12.62355 -12.55473 -12.24943 -11.94046 -11.88463 -11.45840 -11.38956 -11.27677 -11.00652 -10.90615 -10.28117 -10.15131 -9.23293 -8.42897 -5.40159 0.71940 1.42806 1.61423 1.62641 1.70866 1.71451 1.87299 2.15778 2.71265 3.07785 3.25887 3.37983 3.39615 3.56058 3.68660 3.80622 3.83543 3.88730 3.98434 4.11542 4.20194 4.22736 4.39701 4.48559 4.51016 4.56378 4.66418 4.72371 4.81387 4.91482 4.95179 4.98119 5.01109 5.08782 5.13246 5.40015 5.54425 5.83791 6.42912 6.51920 6.96153 7.21435 7.63368 7.85492 7.99113 9.07516 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.004415 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.900072 B = 6340.412125 C = 7710.847304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.508 3.492 3 O -0.592 6.592 4 N -0.722 5.722 5 C 0.146 3.854 6 H 0.091 0.909 7 C -0.118 4.118 8 C -0.018 4.018 9 C 0.179 3.821 10 N -0.337 5.337 11 N -0.335 5.335 12 C 0.176 3.824 13 C 0.247 3.753 14 N -0.744 5.744 15 C -0.337 4.337 16 H 0.078 0.922 17 C -0.096 4.096 18 N -0.970 5.970 19 Si 1.130 2.870 20 H -0.295 1.295 21 H -0.270 1.270 22 H -0.281 1.281 23 N -0.454 5.454 24 C 0.104 3.896 25 C -0.133 4.133 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.413 0.587 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.358 0.642 37 H 0.240 0.760 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.054 0.946 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 18.034 -3.965 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.297 3.703 3 O -0.473 6.473 4 N -0.374 5.374 5 C 0.042 3.958 6 H 0.109 0.891 7 C -0.158 4.158 8 C -0.058 4.058 9 C -0.090 4.090 10 N -0.177 5.177 11 N -0.175 5.175 12 C -0.093 4.093 13 C 0.119 3.881 14 N -0.390 5.390 15 C -0.467 4.467 16 H 0.096 0.904 17 C -0.287 4.287 18 N -0.618 5.618 19 Si 0.954 3.046 20 H -0.222 1.222 21 H -0.195 1.195 22 H -0.207 1.207 23 N -0.144 5.144 24 C -0.017 4.017 25 C -0.171 4.171 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.249 0.751 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.190 0.810 37 H 0.050 0.950 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.073 0.927 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.352 16.978 -3.297 18.793 hybrid contribution -0.140 1.000 0.015 1.010 sum -7.492 17.978 -3.282 19.752 Atomic orbital electron populations 1.21889 0.88654 1.06087 1.05989 1.21494 0.92085 0.82762 0.73912 1.90703 1.71849 1.32794 1.51964 1.46366 1.06712 1.09517 1.74787 1.20245 0.80930 0.99025 0.95647 0.89061 1.21625 0.94758 1.02398 0.96974 1.20633 0.91278 0.87807 1.06130 1.25421 1.00457 0.99631 0.83466 1.74102 1.13090 1.03714 1.26745 1.74460 1.23813 1.14197 1.05038 1.24902 0.95591 0.92410 0.96432 1.18965 0.93508 0.83356 0.92268 1.42393 1.33288 1.20254 1.43024 1.20385 1.13710 0.98709 1.13929 0.90416 1.27252 0.94419 1.04436 1.02609 1.71012 1.35771 1.31597 1.23390 0.82611 0.75791 0.72231 0.73973 1.22171 1.19530 1.20690 1.46234 1.35319 1.18544 1.14315 1.22692 0.89795 1.04780 0.84448 1.21810 0.94944 0.97751 1.02618 0.88305 0.88052 0.87873 0.75071 0.92995 0.89290 0.86817 0.86683 0.93377 0.91649 0.81048 0.94952 0.86940 0.85134 0.92727 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.39 71.23 0.74 -0.75 16 2 C 0.51 8.60 7.69 87.65 0.67 9.27 16 3 O -0.59 -15.06 16.66 -3.05 -0.05 -15.11 16 4 N -0.72 -10.70 4.89 -449.05 -2.20 -12.90 16 5 C 0.15 2.52 1.95 43.63 0.08 2.61 16 6 H 0.09 1.59 6.90 -2.39 -0.02 1.57 16 7 C -0.12 -2.30 5.15 30.16 0.16 -2.15 16 8 C -0.02 -0.37 6.02 30.45 0.18 -0.19 16 9 C 0.18 5.43 7.02 138.82 0.97 6.40 16 10 N -0.34 -13.32 12.23 -50.00 -0.61 -13.93 16 11 N -0.33 -14.69 12.24 -50.43 -0.62 -15.31 16 12 C 0.18 6.77 7.45 138.12 1.03 7.80 16 13 C 0.25 10.00 6.55 85.63 0.56 10.56 16 14 N -0.74 -36.98 5.59 -347.20 -1.94 -38.92 16 15 C -0.34 -18.16 9.99 84.03 0.84 -17.32 16 16 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 17 C -0.10 -5.35 5.50 84.86 0.47 -4.89 16 18 N -0.97 -59.39 13.70 21.65 0.30 -59.09 16 19 Si 1.13 49.69 29.92 68.60 2.05 51.74 16 20 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 23 N -0.45 -13.48 2.73 -500.64 -1.37 -14.84 16 24 C 0.10 2.12 6.47 86.40 0.56 2.67 16 25 C -0.13 -2.51 5.09 30.11 0.15 -2.36 16 26 H 0.10 0.45 7.92 -2.38 -0.02 0.44 16 27 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.41 4.67 8.45 -92.70 -0.78 3.89 16 30 H 0.05 1.23 7.91 -2.39 -0.02 1.22 16 31 H 0.09 1.69 7.91 -2.39 -0.02 1.67 16 32 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.12 1.74 7.89 -2.39 -0.02 1.72 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.30 7.28 -2.39 -0.02 2.28 16 36 H 0.36 19.22 6.49 -92.71 -0.60 18.62 16 37 H 0.24 14.89 6.77 -92.71 -0.63 14.26 16 38 H 0.11 2.36 7.03 -2.39 -0.02 2.34 16 39 H 0.13 1.77 7.87 -2.38 -0.02 1.75 16 40 H 0.05 1.40 8.09 -2.39 -0.02 1.38 16 41 H 0.12 1.77 8.12 -2.39 -0.02 1.75 16 Total: -1.00 -79.63 337.60 1.81 -77.82 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.18 Total: 28.87 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.42 Total: 11.67 kcal Atomic # 7 Polarization: -148.55 SS G_CDS: -6.44 Total: -154.99 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.05 Total: -15.11 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.74 kcal Total: -79.63 1.81 -77.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127919290.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.067 kcal (2) G-P(sol) polarization free energy of solvation -79.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds