Wall clock time and date at job start Fri Apr 10 2020 17:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 120.00097 * 2 1 4 4 N 1.34780 * 119.99962 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99833 * 180.02562 * 4 2 1 6 6 H 1.08995 * 107.85215 * 38.46388 * 5 4 2 7 7 C 1.50953 * 108.02827 * 281.92761 * 5 4 2 8 8 C 1.53676 * 110.96694 * 165.69752 * 7 5 4 9 9 C 1.51891 * 106.89392 * 79.10639 * 8 7 5 10 10 N 1.29888 * 127.81367 * 114.76176 * 9 8 7 11 11 N 1.29035 * 109.22127 * 180.10812 * 10 9 8 12 12 C 1.30970 * 109.70683 * 0.33457 * 11 10 9 13 13 C 1.50698 * 126.60832 * 179.77818 * 12 11 10 14 14 N 1.46490 * 109.47266 * 269.68570 * 13 12 11 15 15 C 1.36935 * 120.00121 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 13 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 N 1.34591 * 124.56372 * 294.93879 * 9 8 7 24 24 C 1.47498 * 125.04423 * 359.44555 * 23 9 8 25 25 C 1.50863 * 108.02794 * 155.00188 * 5 4 2 26 26 H 1.09002 * 109.47651 * 240.00423 * 1 2 3 27 27 H 1.09005 * 109.46853 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46868 * 119.99978 * 1 2 3 29 29 H 0.96993 * 119.99796 * 0.02562 * 4 2 1 30 30 H 1.08992 * 109.18354 * 286.08909 * 7 5 4 31 31 H 1.09009 * 109.17331 * 45.31730 * 7 5 4 32 32 H 1.08997 * 109.96877 * 198.45116 * 8 7 5 33 33 H 1.08997 * 109.96528 * 319.67344 * 8 7 5 34 34 H 1.09003 * 109.46558 * 149.68447 * 13 12 11 35 35 H 1.08999 * 109.47347 * 29.69487 * 13 12 11 36 36 H 0.97000 * 120.00577 * 0.02562 * 14 13 12 37 37 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 38 38 H 1.09007 * 109.92936 * 185.38567 * 24 23 9 39 39 H 1.09001 * 109.93293 * 306.50856 * 24 23 9 40 40 H 1.09004 * 109.15370 * 73.99365 * 25 5 4 41 41 H 1.09004 * 109.10286 * 314.81334 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 1 3.9797 -0.3547 0.6464 7 6 4.1136 -0.8708 -1.4032 8 6 5.6060 -0.5048 -1.4200 9 6 6.3811 -1.8080 -1.3310 10 7 7.1616 -2.3332 -2.2266 11 7 7.6339 -3.4470 -1.7780 12 6 7.1627 -3.6749 -0.5774 13 6 7.4620 -4.8674 0.2940 14 7 6.4796 -5.9222 0.0326 15 6 6.5518 -7.1087 0.7122 16 1 7.3327 -7.2668 1.4413 17 6 5.6212 -8.1085 0.4642 18 7 4.6698 -7.9160 -0.4248 19 14 5.7193 -9.7269 1.3919 20 1 4.6195 -10.6200 0.9468 21 1 7.0260 -10.3767 1.1166 22 1 5.5908 -9.4709 2.8489 23 7 6.3640 -2.6356 -0.2697 24 6 5.6035 -2.4041 0.9727 25 6 4.1125 -2.4672 0.6078 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6958 -2.0072 0.0005 30 1 3.9534 -1.7501 -2.0271 31 1 3.5360 -0.0380 -1.8047 32 1 5.8521 0.0120 -2.3476 33 1 5.8432 0.1299 -0.5663 34 1 7.4094 -4.5735 1.3424 35 1 8.4622 -5.2388 0.0707 36 1 5.7784 -5.7804 -0.6225 37 1 4.6187 -7.0755 -0.9062 38 1 5.8405 -3.1779 1.7031 39 1 5.8465 -1.4225 1.3797 40 1 3.9535 -3.2735 -0.1083 41 1 3.5323 -2.6693 1.5082 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127919291.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:07 Heat of formation + Delta-G solvation = 50.727878 kcal Electronic energy + Delta-G solvation = -23986.792089 eV Core-core repulsion = 20517.276784 eV Total energy + Delta-G solvation = -3469.515306 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.09164 -40.20319 -37.55661 -35.42643 -34.64324 -33.57419 -31.69928 -31.48043 -29.81107 -29.13529 -26.15409 -25.56976 -24.24792 -22.99553 -21.44795 -20.97364 -20.58829 -19.98987 -17.64846 -17.30411 -16.98849 -16.65503 -15.88242 -15.54482 -15.15373 -14.95079 -14.44787 -14.16320 -13.84684 -13.64563 -13.39820 -13.15666 -13.02700 -12.85911 -12.74041 -12.57210 -12.24414 -12.02237 -11.79279 -11.52117 -11.12733 -10.99348 -10.79807 -10.78643 -10.23565 -10.08947 -10.03847 -9.91421 -9.43509 -9.36920 -9.04295 -8.75168 -7.18491 -6.22194 -3.24564 2.05541 2.35286 2.62347 2.84131 3.14764 3.45537 3.49752 3.66677 4.12495 4.30205 4.40415 4.50173 4.57813 4.58401 4.74373 4.83088 4.90062 4.93329 5.03534 5.06884 5.11616 5.24376 5.29300 5.44524 5.50943 5.54086 5.67468 5.69034 5.73927 5.81615 5.93218 6.10268 6.14437 6.21576 6.44936 6.48972 7.07168 7.18821 7.66343 7.91731 8.62748 9.04531 9.04732 9.92193 10.05872 11.25421 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.004405 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.912733 B = 6355.016732 C = 7710.700785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.511 3.489 3 O -0.547 6.547 4 N -0.731 5.731 5 C 0.146 3.854 6 H 0.082 0.918 7 C -0.128 4.128 8 C -0.022 4.022 9 C 0.160 3.840 10 N -0.296 5.296 11 N -0.293 5.293 12 C 0.188 3.812 13 C 0.242 3.758 14 N -0.734 5.734 15 C -0.338 4.338 16 H 0.069 0.931 17 C -0.039 4.039 18 N -0.938 5.938 19 Si 1.082 2.918 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.294 1.294 23 N -0.463 5.463 24 C 0.112 3.888 25 C -0.144 4.144 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.403 0.597 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.369 0.631 37 H 0.254 0.746 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 16.321 4.563 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.298 3.702 3 O -0.425 6.425 4 N -0.383 5.383 5 C 0.042 3.958 6 H 0.100 0.900 7 C -0.167 4.167 8 C -0.062 4.062 9 C -0.108 4.108 10 N -0.136 5.136 11 N -0.133 5.133 12 C -0.080 4.080 13 C 0.113 3.887 14 N -0.381 5.381 15 C -0.468 4.468 16 H 0.087 0.913 17 C -0.237 4.237 18 N -0.583 5.583 19 Si 0.912 3.088 20 H -0.210 1.210 21 H -0.220 1.220 22 H -0.222 1.222 23 N -0.154 5.154 24 C -0.011 4.011 25 C -0.182 4.182 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.238 0.762 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.202 0.798 37 H 0.065 0.935 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.520 15.343 3.650 17.066 hybrid contribution -0.407 1.196 0.757 1.472 sum -6.927 16.539 4.407 18.464 Atomic orbital electron populations 1.21935 0.91633 1.05533 1.04439 1.20838 0.90672 0.83447 0.75240 1.90722 1.70873 1.31369 1.49492 1.46334 1.07136 1.09080 1.75723 1.20340 0.79956 0.98372 0.97163 0.89958 1.21711 0.95126 1.03135 0.96747 1.20356 0.91816 0.89234 1.04794 1.24675 1.02397 0.97505 0.86202 1.74200 1.10897 1.04343 1.24134 1.74584 1.22057 1.09490 1.07177 1.25270 0.94009 0.92735 0.95937 1.18978 0.95169 0.82038 0.92528 1.42270 1.32680 1.13750 1.49409 1.20001 1.14236 0.93075 1.19495 0.91313 1.25833 0.94630 1.02728 1.00484 1.70892 1.33983 1.26927 1.26494 0.83225 0.75811 0.75125 0.74652 1.20979 1.22033 1.22157 1.46076 1.36222 1.17647 1.15450 1.22278 0.89869 1.04302 0.84653 1.21891 0.95291 0.97850 1.03160 0.89315 0.88977 0.89292 0.76211 0.91054 0.89688 0.87793 0.89501 0.94457 0.92458 0.79761 0.93455 0.86814 0.88677 0.89650 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 10.32 36.00 0.37 -0.64 16 2 C 0.51 4.85 7.54 -10.99 -0.08 4.77 16 3 O -0.55 -7.40 16.20 5.56 0.09 -7.31 16 4 N -0.73 -6.15 4.99 -55.87 -0.28 -6.43 16 5 C 0.15 1.41 1.90 -70.03 -0.13 1.28 16 6 H 0.08 0.83 7.13 -51.93 -0.37 0.46 16 7 C -0.13 -1.38 5.09 -27.41 -0.14 -1.51 16 8 C -0.02 -0.24 6.02 -26.94 -0.16 -0.41 16 9 C 0.16 2.49 7.03 -155.75 -1.09 1.40 16 10 N -0.30 -5.79 12.23 32.84 0.40 -5.39 16 11 N -0.29 -6.28 12.25 32.71 0.40 -5.88 16 12 C 0.19 3.60 7.45 -155.39 -1.16 2.44 16 13 C 0.24 4.90 6.55 -5.20 -0.03 4.87 16 14 N -0.73 -18.05 5.59 -61.09 -0.34 -18.39 16 15 C -0.34 -9.15 9.99 -15.06 -0.15 -9.30 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 18 N -0.94 -28.24 13.70 55.49 0.76 -27.48 16 19 Si 1.08 24.94 29.92 -169.99 -5.09 19.85 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.46 -7.07 2.72 -109.59 -0.30 -7.37 16 24 C 0.11 1.25 6.48 -3.17 -0.02 1.23 16 25 C -0.14 -1.46 5.05 -27.47 -0.14 -1.60 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.55 8.12 -51.93 -0.42 0.12 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.40 2.66 8.54 -40.82 -0.35 2.31 16 30 H 0.07 0.89 7.91 -51.93 -0.41 0.47 16 31 H 0.08 0.93 7.23 -51.92 -0.38 0.55 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.82 7.89 -51.93 -0.41 0.41 16 34 H 0.04 0.69 7.28 -51.93 -0.38 0.31 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.37 9.61 6.49 -40.82 -0.26 9.35 16 37 H 0.25 7.63 6.77 -40.82 -0.28 7.36 16 38 H 0.11 1.30 7.03 -51.93 -0.37 0.94 16 39 H 0.10 0.81 7.88 -51.93 -0.41 0.40 16 40 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 41 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -35.94 336.72 -7.88 -43.82 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.77 Total: 8.14 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.84 Total: 1.35 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: 0.64 Total: -70.93 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.09 Total: -7.31 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.09 Total: 19.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.94 -7.88 -43.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127919291.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.552 kcal (2) G-P(sol) polarization free energy of solvation -35.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds