Wall clock time and date at job start Fri Apr 10 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.29109 * 126.00762 * 2 1 4 4 N 1.29023 * 110.25681 * 180.02562 * 3 2 1 5 5 C 1.32913 * 108.63348 * 0.02562 * 4 3 2 6 6 C 1.34393 * 126.00279 * 179.97438 * 2 1 3 7 7 C 1.50534 * 129.25785 * 359.85308 * 6 2 1 8 8 C 1.53439 * 108.32363 * 196.44280 * 7 6 2 9 9 H 1.08999 * 109.45737 * 70.29772 * 8 7 6 10 10 C 1.50700 * 109.45670 * 190.25814 * 8 7 6 11 11 O 1.21292 * 119.99931 * 0.03534 * 10 8 7 12 12 N 1.34774 * 120.00381 * 180.02562 * 10 8 7 13 13 C 1.46499 * 120.00391 * 180.02562 * 12 10 8 14 14 C 1.52992 * 109.47267 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.47267 * 180.02562 * 14 13 12 16 16 C 1.36935 * 119.99938 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00518 * 359.72965 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47361 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46860 * 120.00310 * 20 18 16 23 23 H 1.48500 * 109.47264 * 240.00123 * 20 18 16 24 24 C 1.53109 * 109.54113 * 310.27466 * 8 7 6 25 25 C 1.50599 * 129.15736 * 179.78335 * 5 4 3 26 26 H 1.08997 * 109.47690 * 270.00133 * 1 2 3 27 27 H 1.09006 * 109.46574 * 30.00312 * 1 2 3 28 28 H 1.09001 * 109.47260 * 149.99415 * 1 2 3 29 29 H 1.09005 * 109.69327 * 76.73619 * 7 6 2 30 30 H 1.08997 * 109.72570 * 316.16682 * 7 6 2 31 31 H 0.96999 * 119.99625 * 359.97438 * 12 10 8 32 32 H 1.09004 * 109.47024 * 59.99682 * 13 12 10 33 33 H 1.09005 * 109.47136 * 300.00066 * 13 12 10 34 34 H 1.09004 * 109.47330 * 59.99904 * 14 13 12 35 35 H 1.09005 * 109.47124 * 300.00108 * 14 13 12 36 36 H 0.96999 * 119.99984 * 359.97438 * 15 14 13 37 37 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 38 38 H 1.08991 * 109.45379 * 190.11030 * 24 8 7 39 39 H 1.08998 * 109.45219 * 310.04175 * 24 8 7 40 40 H 1.08996 * 109.69184 * 316.33423 * 25 5 4 41 41 H 1.09000 * 109.68794 * 76.87208 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4658 0.6942 -0.0005 5 6 3.5327 -0.6333 -0.0015 6 6 2.2550 -1.0872 0.0005 7 6 1.8720 -2.5430 0.0041 8 6 3.1012 -3.3642 0.4155 9 1 3.3139 -3.1954 1.4711 10 6 2.8264 -4.8281 0.1867 11 8 1.7560 -5.1815 -0.2610 12 7 3.7701 -5.7448 0.4793 13 6 3.5032 -7.1679 0.2563 14 6 4.7285 -7.9870 0.6665 15 7 4.4618 -9.4100 0.4430 16 6 5.4211 -10.3412 0.7392 17 1 6.3760 -10.0263 1.1335 18 6 5.1682 -11.6897 0.5279 19 7 4.0066 -12.0732 0.0423 20 14 6.4772 -12.9599 0.9314 21 1 7.6848 -12.2757 1.4595 22 1 5.9548 -13.9012 1.9544 23 1 6.8323 -13.7126 -0.2985 24 6 4.3081 -2.9346 -0.4231 25 6 4.7468 -1.5243 -0.0068 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5139 29 1 1.5488 -2.8403 -0.9935 30 1 1.0642 -2.7091 0.7167 31 1 4.6264 -5.4621 0.8368 32 1 3.2905 -7.3366 -0.7994 33 1 2.6443 -7.4744 0.8535 34 1 4.9416 -7.8183 1.7221 35 1 5.5871 -7.6804 0.0690 36 1 3.6057 -9.6927 0.0851 37 1 3.8300 -13.0154 -0.1057 38 1 5.1295 -3.6325 -0.2612 39 1 4.0352 -2.9343 -1.4784 40 1 5.4792 -1.1428 -0.7181 41 1 5.1848 -1.5541 0.9909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132919671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:11 Heat of formation + Delta-G solvation = 35.115998 kcal Electronic energy + Delta-G solvation = -22735.202419 eV Core-core repulsion = 19265.010131 eV Total energy + Delta-G solvation = -3470.192287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.43352 -41.05215 -37.83055 -37.16740 -35.88027 -35.47416 -33.17279 -31.59019 -31.49891 -29.34844 -28.70570 -26.14495 -25.00916 -24.22332 -23.01221 -22.39821 -21.64337 -20.47789 -19.30071 -18.48469 -17.91687 -17.48610 -16.94576 -16.60197 -16.50037 -15.85408 -15.41206 -15.24634 -15.04449 -14.82873 -14.74353 -14.45442 -14.41155 -14.11614 -13.68307 -13.17219 -13.05828 -13.02546 -13.00748 -12.67067 -12.61143 -12.44148 -12.15595 -12.02097 -11.93984 -11.83938 -11.55527 -10.98256 -10.95070 -10.82639 -10.09050 -9.86988 -9.03722 -7.95447 -5.26066 0.53066 1.43060 1.47604 1.50464 1.51165 1.61304 1.62811 2.10828 2.59282 3.16138 3.39429 3.41023 3.72251 3.76544 3.78334 3.92454 4.04798 4.13373 4.20420 4.25369 4.27934 4.33007 4.44968 4.51744 4.56986 4.64825 4.68108 4.90008 4.91831 5.03291 5.07844 5.12010 5.18975 5.22635 5.33760 5.43010 5.52452 5.61171 6.26131 6.57846 7.26241 7.32389 7.44630 8.05384 8.27058 9.28474 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043194 B = 0.002378 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.079735 B =11770.979772 C =12311.856203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.278 5.278 3 N -0.130 5.130 4 N -0.299 5.299 5 C -0.032 4.032 6 C -0.014 4.014 7 C -0.020 4.020 8 C -0.090 4.090 9 H 0.129 0.871 10 C 0.520 3.480 11 O -0.583 6.583 12 N -0.708 5.708 13 C 0.128 3.872 14 C 0.147 3.853 15 N -0.748 5.748 16 C -0.243 4.243 17 H 0.084 0.916 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.977 3.023 21 H -0.261 1.261 22 H -0.295 1.295 23 H -0.295 1.295 24 C -0.107 4.107 25 C -0.027 4.027 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.418 0.582 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 24.935 1.575 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.070 5.070 3 N -0.107 5.107 4 N -0.163 5.163 5 C -0.174 4.174 6 C -0.150 4.150 7 C -0.059 4.059 8 C -0.112 4.112 9 H 0.147 0.853 10 C 0.307 3.693 11 O -0.463 6.463 12 N -0.360 5.360 13 C 0.003 3.997 14 C 0.020 3.980 15 N -0.391 5.391 16 C -0.375 4.375 17 H 0.102 0.898 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.806 3.194 21 H -0.185 1.185 22 H -0.222 1.222 23 H -0.222 1.222 24 C -0.145 4.145 25 C -0.066 4.066 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.256 0.744 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.205 0.795 37 H 0.060 0.940 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.085 26.259 1.329 26.608 hybrid contribution 0.046 -1.920 0.029 1.921 sum -4.038 24.339 1.358 24.709 Atomic orbital electron populations 1.22736 0.70200 1.07577 1.06860 1.47204 1.10659 1.03951 1.45219 1.78505 0.96441 1.12463 1.23324 1.74746 1.10294 1.13468 1.17753 1.22278 0.96547 0.90963 1.07568 1.22003 0.91116 0.92664 1.09180 1.19892 0.98066 0.83695 1.04289 1.21294 0.96846 0.88568 1.04457 0.85286 1.20899 0.83221 0.88705 0.76440 1.90715 1.26351 1.82689 1.46509 1.45717 1.18962 1.05598 1.65742 1.21135 0.97848 0.80339 1.00416 1.20878 0.95108 0.83356 0.98610 1.42451 1.17021 1.01480 1.78197 1.19685 0.95753 0.87650 1.34424 0.89832 1.25651 0.99368 0.99378 1.02679 1.69835 1.24350 1.15362 1.52632 0.85025 0.78697 0.78911 0.76807 1.18546 1.22197 1.22191 1.21672 0.96661 0.96485 0.99662 1.20059 0.91562 0.90439 1.04514 0.87074 0.86815 0.86350 0.89142 0.88493 0.74402 0.92816 0.92856 0.94422 0.94297 0.79483 0.93972 0.87588 0.91295 0.88711 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 11.27 127.77 1.44 1.92 16 2 N -0.28 -4.89 3.73 -356.40 -1.33 -6.22 16 3 N -0.13 -3.16 13.19 37.02 0.49 -2.67 16 4 N -0.30 -7.71 12.40 -48.99 -0.61 -8.32 16 5 C -0.03 -0.64 7.11 41.75 0.30 -0.34 16 6 C -0.01 -0.25 6.76 41.50 0.28 0.03 16 7 C -0.02 -0.29 4.68 29.94 0.14 -0.15 16 8 C -0.09 -1.22 2.50 -11.36 -0.03 -1.25 16 9 H 0.13 1.24 8.12 -2.39 -0.02 1.22 16 10 C 0.52 11.30 7.15 87.66 0.63 11.93 16 11 O -0.58 -17.95 15.82 -3.07 -0.05 -18.00 16 12 N -0.71 -14.94 5.37 -463.06 -2.49 -17.42 16 13 C 0.13 3.91 5.79 86.38 0.50 4.41 16 14 C 0.15 5.18 6.37 86.38 0.55 5.73 16 15 N -0.75 -36.56 5.60 -343.45 -1.92 -38.48 16 16 C -0.24 -13.07 9.99 84.04 0.84 -12.23 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 19 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 20 Si 0.98 44.90 29.55 68.60 2.03 46.93 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 C -0.11 -1.19 5.17 30.78 0.16 -1.03 16 25 C -0.03 -0.33 6.30 29.97 0.19 -0.14 16 26 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.12 0.46 7.96 -2.39 -0.02 0.44 16 29 H 0.09 1.51 7.78 -2.38 -0.02 1.49 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.42 5.90 7.80 -92.71 -0.72 5.17 16 32 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.37 19.85 7.67 -92.71 -0.71 19.13 16 37 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.11 0.78 7.30 -2.39 -0.02 0.76 16 39 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.91 342.82 1.49 -76.43 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.38 Total: 21.51 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.46 Total: 4.91 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -5.58 Total: -131.77 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.05 Total: -18.00 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -77.91 1.49 -76.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132919671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.542 kcal (2) G-P(sol) polarization free energy of solvation -77.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds