Wall clock time and date at job start Fri Apr 10 2020 17:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.46545 * 2 1 4 4 C 1.53041 * 109.44574 * 240.02927 * 2 1 3 5 5 C 1.53627 * 109.24280 * 178.50070 * 4 2 1 6 6 N 1.46927 * 108.54101 * 54.85449 * 5 4 2 7 7 C 1.34780 * 120.62329 * 126.37023 * 6 5 4 8 8 O 1.21623 * 119.99509 * 186.48903 * 7 6 5 9 9 C 1.47226 * 120.00375 * 6.49445 * 7 6 5 10 10 C 1.37009 * 127.19064 * 202.80773 * 9 7 6 11 11 N 1.33316 * 106.37440 * 180.02562 * 10 9 7 12 12 N 1.28510 * 109.43917 * 359.97438 * 11 10 9 13 13 N 1.28715 * 110.63968 * 0.02562 * 12 11 10 14 14 H 0.96995 * 126.03591 * 179.73681 * 13 12 11 15 15 C 1.46926 * 118.74360 * 306.09689 * 6 5 4 16 16 C 1.53040 * 109.45834 * 119.97351 * 2 1 3 17 17 H 1.09003 * 109.49995 * 61.41689 * 16 2 1 18 18 C 1.52998 * 109.52682 * 301.33792 * 16 2 1 19 19 N 1.46490 * 109.47405 * 175.14873 * 18 16 2 20 20 C 1.36947 * 120.00160 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99612 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00155 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00181 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00131 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46721 * 60.00573 * 24 22 20 26 26 H 1.48504 * 109.47351 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47314 * 300.00646 * 24 22 20 28 28 H 1.09002 * 109.46915 * 300.03285 * 1 2 3 29 29 H 1.09002 * 109.47353 * 60.02512 * 1 2 3 30 30 H 1.08994 * 109.47673 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.50163 * 298.57906 * 4 2 1 32 32 H 1.09001 * 109.49580 * 58.64222 * 4 2 1 33 33 H 1.09001 * 109.73473 * 295.12125 * 5 4 2 34 34 H 1.08999 * 109.66762 * 174.55447 * 5 4 2 35 35 H 1.08000 * 126.81260 * 0.02562 * 10 9 7 36 36 H 1.08999 * 109.58436 * 173.64490 * 15 6 5 37 37 H 1.08993 * 109.58441 * 294.07409 * 15 6 5 38 38 H 1.09007 * 109.46593 * 295.14798 * 18 16 2 39 39 H 1.09003 * 109.47088 * 55.14148 * 18 16 2 40 40 H 0.97002 * 120.00606 * 359.97438 * 19 18 16 41 41 H 0.96996 * 120.00025 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0395 -0.7209 -1.2501 5 6 3.5753 -0.6854 -1.2645 6 7 4.0675 -1.2495 -0.0003 7 6 4.9615 -2.2581 -0.0005 8 8 5.2723 -2.7954 1.0454 9 6 5.5620 -2.7094 -1.2667 10 6 6.1190 -3.9333 -1.5293 11 7 6.5325 -3.8941 -2.7961 12 7 6.2617 -2.7429 -3.2989 13 7 5.6807 -1.9930 -2.4289 14 1 5.3831 -1.0807 -2.5697 15 6 3.5714 -0.6891 1.2641 16 6 2.0398 -0.7209 1.2500 17 1 1.6975 -1.7557 1.2383 18 6 1.5031 -0.0197 2.4994 19 7 1.8953 -0.7766 3.6907 20 6 1.5255 -0.3370 4.9339 21 1 0.9443 0.5676 5.0359 22 6 1.8967 -1.0544 6.0626 23 7 2.6045 -2.1571 5.9383 24 14 1.3928 -0.4543 7.7583 25 1 -0.0887 -0.3948 7.8423 26 1 1.9102 -1.3903 8.7887 27 1 1.9567 0.8994 7.9921 28 1 -0.3633 0.5144 0.8897 29 1 -0.3634 0.5134 -0.8902 30 1 -0.3634 -1.0276 0.0005 31 1 1.6972 -1.7557 -1.2384 32 1 1.6564 -0.2211 -2.1398 33 1 3.9187 0.3443 -1.3634 34 1 3.9482 -1.2789 -2.0993 35 1 6.2058 -4.7649 -0.8457 36 1 3.9416 -1.2852 2.0981 37 1 3.9145 0.3402 1.3671 38 1 1.9161 0.9874 2.5565 39 1 0.4158 0.0360 2.4459 40 1 2.4170 -1.5893 3.5992 41 1 2.8642 -2.6583 6.7271 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132946110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:13 Heat of formation + Delta-G solvation = 57.481578 kcal Electronic energy + Delta-G solvation = -23980.137354 eV Core-core repulsion = 20510.914911 eV Total energy + Delta-G solvation = -3469.222443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.58341 -41.36744 -39.26747 -36.79788 -35.47953 -34.47686 -33.55706 -32.62808 -31.42326 -29.42192 -27.50321 -25.86169 -25.12470 -24.03363 -23.77959 -22.63304 -22.03650 -20.88610 -19.27778 -19.00341 -18.11021 -17.59257 -17.30382 -16.73946 -16.32172 -15.63466 -15.55381 -15.49939 -15.42734 -15.11188 -14.55968 -14.37256 -14.15018 -14.10218 -13.38185 -13.18967 -13.05778 -12.77581 -12.72558 -12.70324 -12.40390 -12.23325 -12.10908 -11.92505 -11.86252 -11.75556 -11.51379 -11.25763 -11.11547 -10.90373 -10.71589 -9.84271 -8.97743 -7.93012 -5.22924 -0.25683 1.08835 1.26783 1.46622 1.49977 1.56351 1.59792 1.92614 2.56658 3.01392 3.40080 3.41176 3.53194 3.70124 3.80205 3.82755 3.91223 3.97900 4.13931 4.20621 4.27939 4.43357 4.54187 4.68873 4.72542 4.77456 4.85100 4.88515 4.95359 5.02872 5.11467 5.23039 5.24059 5.30752 5.46495 5.49734 5.56391 5.57091 6.08450 6.27798 6.76936 7.08565 7.33706 8.11045 8.31885 9.30063 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.004007 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.926197 B = 6985.323583 C = 8189.717954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 H 0.093 0.907 4 C -0.121 4.121 5 C 0.081 3.919 6 N -0.598 5.598 7 C 0.587 3.413 8 O -0.555 6.555 9 C -0.056 4.056 10 C 0.025 3.975 11 N -0.290 5.290 12 N -0.053 5.053 13 N -0.352 5.352 14 H 0.469 0.531 15 C 0.128 3.872 16 C -0.090 4.090 17 H 0.050 0.950 18 C 0.157 3.843 19 N -0.748 5.748 20 C -0.246 4.246 21 H 0.079 0.921 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.973 3.027 25 H -0.276 1.276 26 H -0.298 1.298 27 H -0.276 1.276 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.213 0.787 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.027 0.973 39 H 0.032 0.968 40 H 0.371 0.629 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 6.580 -22.382 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.111 0.889 4 C -0.159 4.159 5 C -0.040 4.040 6 N -0.330 5.330 7 C 0.373 3.627 8 O -0.431 6.431 9 C -0.190 4.190 10 C -0.134 4.134 11 N -0.155 5.155 12 N -0.035 5.035 13 N -0.087 5.087 14 H 0.325 0.675 15 C 0.006 3.994 16 C -0.110 4.110 17 H 0.068 0.932 18 C 0.030 3.970 19 N -0.391 5.391 20 C -0.378 4.378 21 H 0.097 0.903 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.202 1.202 26 H -0.225 1.225 27 H -0.202 1.202 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.229 0.771 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.202 0.798 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.359 6.231 -23.134 23.997 hybrid contribution -0.542 0.080 2.539 2.597 sum 0.817 6.311 -20.596 21.556 Atomic orbital electron populations 1.21862 0.94437 1.01601 1.02520 1.21092 0.96399 0.99960 0.92189 0.88883 1.22034 0.93266 1.01496 0.99111 1.22643 0.96489 1.01200 0.83702 1.48128 1.41734 1.34050 1.09068 1.17133 0.79577 0.79887 0.86119 1.90940 1.63205 1.56208 1.32788 1.21994 1.11661 0.95931 0.89456 1.24193 0.97306 0.97796 0.94104 1.74998 1.19695 1.11949 1.08823 1.78131 1.10686 0.98293 1.16394 1.46257 1.39070 1.16575 1.06827 0.67549 1.21565 0.94165 0.98985 0.84707 1.21588 0.93851 0.99696 0.95865 0.93172 1.20921 0.97179 0.94014 0.84866 1.42668 1.65168 1.29303 1.01950 1.19619 1.26888 1.06245 0.85043 0.90333 1.25600 1.01587 0.97936 1.01753 1.69847 1.44206 1.18879 1.29185 0.85217 0.77935 0.77170 0.79465 1.20244 1.22474 1.20194 0.93101 0.90164 0.93830 0.92545 0.86495 0.86490 0.89168 0.77064 0.92323 0.89540 0.95460 0.95025 0.79751 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.81 71.98 0.63 -2.04 16 2 C -0.08 -1.40 2.23 -10.77 -0.02 -1.42 16 3 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.12 -1.50 5.38 30.82 0.17 -1.33 16 5 C 0.08 0.92 5.45 86.51 0.47 1.40 16 6 N -0.60 -13.62 2.97 -822.16 -2.44 -16.06 16 7 C 0.59 16.36 7.65 86.60 0.66 17.03 16 8 O -0.56 -21.65 16.42 -4.10 -0.07 -21.72 16 9 C -0.06 -1.21 6.49 40.41 0.26 -0.94 16 10 C 0.03 0.58 11.94 84.18 1.00 1.58 16 11 N -0.29 -6.90 12.35 -57.50 -0.71 -7.61 16 12 N -0.05 -1.06 13.35 37.02 0.49 -0.57 16 13 N -0.35 -5.27 5.77 -48.53 -0.28 -5.55 16 14 H 0.47 3.15 6.43 -219.90 -1.41 1.74 16 15 C 0.13 3.82 5.53 86.36 0.48 4.30 16 16 C -0.09 -2.62 1.92 -10.72 -0.02 -2.64 16 17 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 18 C 0.16 5.84 5.41 86.38 0.47 6.31 16 19 N -0.75 -38.11 5.38 -343.46 -1.85 -39.95 16 20 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 21 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 22 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 23 N -0.97 -61.47 13.06 21.65 0.28 -61.19 16 24 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 27 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 28 H 0.05 1.09 6.30 -2.39 -0.02 1.08 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 0.73 4.14 -2.39 -0.01 0.72 16 35 H 0.21 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.06 2.40 6.20 -2.39 -0.01 2.38 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.03 1.18 6.15 -2.39 -0.01 1.16 16 40 H 0.37 20.80 6.89 -92.71 -0.64 20.16 16 41 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -77.69 330.02 1.89 -75.80 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.98 Total: 22.88 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 5.41 Total: 5.26 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -4.50 Total: -130.93 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.07 Total: -21.72 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.69 1.89 -75.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132946110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.280 kcal (2) G-P(sol) polarization free energy of solvation -77.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds