Wall clock time and date at job start Fri Apr 10 2020 17:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.45089 * 2 1 4 4 C 1.53033 * 109.46128 * 119.97156 * 2 1 3 5 5 C 1.53197 * 109.31521 * 181.38362 * 4 2 1 6 6 N 1.46922 * 108.77588 * 305.36452 * 5 4 2 7 7 C 1.34772 * 120.63261 * 233.58514 * 6 5 4 8 8 O 1.21551 * 119.99968 * 172.90901 * 7 6 5 9 9 C 1.47876 * 119.99687 * 352.90588 * 7 6 5 10 10 N 1.34550 * 126.04345 * 172.23494 * 9 7 6 11 11 C 1.30869 * 107.26555 * 180.02562 * 10 9 7 12 12 N 1.34579 * 107.62717 * 0.02562 * 11 10 9 13 13 H 0.97000 * 125.74993 * 179.97438 * 12 11 10 14 14 N 1.28853 * 108.50502 * 359.72837 * 12 11 10 15 15 C 1.46924 * 118.73699 * 53.60561 * 6 5 4 16 16 C 1.53047 * 109.45953 * 240.03908 * 2 1 3 17 17 H 1.08999 * 109.49290 * 298.56459 * 16 2 1 18 18 C 1.52996 * 109.49877 * 58.65987 * 16 2 1 19 19 N 1.46499 * 109.47494 * 184.84006 * 18 16 2 20 20 C 1.36931 * 120.00357 * 180.02562 * 19 18 16 21 21 H 1.08007 * 120.00006 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99820 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00157 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99672 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47334 * 59.99912 * 24 22 20 26 26 H 1.48502 * 109.46991 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47055 * 300.00081 * 24 22 20 28 28 H 1.09002 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47114 * 299.96225 * 1 2 3 30 30 H 1.09000 * 109.47535 * 59.96570 * 1 2 3 31 31 H 1.09000 * 109.50441 * 61.43005 * 4 2 1 32 32 H 1.09002 * 109.49892 * 301.33228 * 4 2 1 33 33 H 1.08994 * 109.58916 * 185.57337 * 5 4 2 34 34 H 1.09007 * 109.69754 * 65.22192 * 5 4 2 35 35 H 1.07998 * 126.18594 * 179.97438 * 11 10 9 36 36 H 1.09006 * 109.59003 * 186.60592 * 15 6 5 37 37 H 1.08999 * 109.59153 * 66.18235 * 15 6 5 38 38 H 1.08998 * 109.47296 * 304.84357 * 18 16 2 39 39 H 1.08999 * 109.47098 * 64.83735 * 18 16 2 40 40 H 0.97007 * 119.99527 * 0.02562 * 19 18 16 41 41 H 0.97000 * 119.99855 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5714 -0.6887 1.2641 6 7 4.0679 -1.2489 -0.0001 7 6 4.9621 -2.2572 -0.0003 8 8 5.2679 -2.7982 -1.0449 9 6 5.5711 -2.7054 1.2705 10 7 6.3576 -3.7848 1.4342 11 6 6.6892 -3.8356 2.6991 12 7 6.1079 -2.7897 3.3151 13 1 6.1802 -2.5759 4.2585 14 7 5.4434 -2.1171 2.4397 15 6 3.5714 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2502 17 1 1.6978 -1.7555 -1.2384 18 6 1.5027 -0.0188 -2.4990 19 7 1.8949 -0.7748 -3.6910 20 6 1.5248 -0.3344 -4.9336 21 1 0.9441 0.5706 -5.0351 22 6 1.8969 -1.0506 -6.0630 23 7 2.6049 -2.1532 -5.9395 24 14 1.3925 -0.4495 -7.7583 25 1 1.9552 0.9049 -7.9909 26 1 1.9099 -1.3847 -8.7893 27 1 -0.0890 -0.3911 -7.8423 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5133 0.8904 30 1 -0.3634 0.5143 -0.8896 31 1 1.6978 -1.7557 1.2382 32 1 1.6573 -0.2208 2.1398 33 1 3.9417 -1.2846 2.0982 34 1 3.9164 0.3401 1.3685 35 1 7.3153 -4.5823 3.1647 36 1 3.9416 -1.2844 -2.0986 37 1 3.9143 0.3410 -1.3674 38 1 0.4155 0.0367 -2.4454 39 1 1.9155 0.9885 -2.5556 40 1 2.4167 -1.5874 -3.5999 41 1 2.8646 -2.6538 -6.7287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133181570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:28 Heat of formation + Delta-G solvation = 75.343770 kcal Electronic energy + Delta-G solvation = -23932.801844 eV Core-core repulsion = 20464.353963 eV Total energy + Delta-G solvation = -3468.447880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.73289 -39.96990 -37.80768 -34.96532 -33.72625 -33.60848 -32.03417 -31.53636 -29.68643 -28.22855 -25.90124 -24.56979 -23.28779 -23.03857 -22.60772 -21.14357 -20.19629 -19.43015 -18.51977 -17.31303 -16.87808 -16.58099 -15.84340 -15.01901 -14.93899 -14.77168 -14.32164 -13.96323 -13.83928 -13.53723 -13.23084 -13.06280 -12.65967 -12.45229 -12.30941 -11.77454 -11.61429 -11.31991 -10.94554 -10.91239 -10.86641 -10.71971 -10.66171 -10.44861 -10.18946 -10.07829 -10.03399 -9.94178 -9.68213 -9.49491 -8.76618 -8.43452 -6.79878 -5.63185 -2.92982 1.12873 1.97398 2.30473 2.88973 3.37356 3.51979 3.55756 3.57713 3.98483 4.22749 4.54803 4.67395 4.88335 4.97592 4.99490 5.25188 5.40845 5.49277 5.67795 5.71057 5.73453 5.75545 5.84351 5.89782 6.01684 6.03118 6.10402 6.11508 6.24534 6.30899 6.39743 6.44508 6.53178 6.63236 6.75715 6.88773 6.97634 7.43656 7.75292 7.79619 8.27354 8.54397 9.65151 10.23861 10.58038 11.58966 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.004014 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.476928 B = 6973.345071 C = 8214.340073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.127 4.127 5 C 0.087 3.913 6 N -0.594 5.594 7 C 0.603 3.397 8 O -0.498 6.498 9 C 0.167 3.833 10 N -0.461 5.461 11 C 0.197 3.803 12 N -0.406 5.406 13 H 0.449 0.551 14 N -0.279 5.279 15 C 0.122 3.878 16 C -0.102 4.102 17 H 0.075 0.925 18 C 0.159 3.841 19 N -0.733 5.733 20 C -0.243 4.243 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.287 1.287 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.230 0.770 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.018 0.982 40 H 0.385 0.615 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 1.465 26.225 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.165 4.165 5 C -0.036 4.036 6 N -0.328 5.328 7 C 0.385 3.615 8 O -0.368 6.368 9 C -0.114 4.114 10 N -0.185 5.185 11 C -0.101 4.101 12 N -0.128 5.128 13 H 0.296 0.704 14 N -0.120 5.120 15 C 0.001 3.999 16 C -0.121 4.121 17 H 0.093 0.907 18 C 0.031 3.969 19 N -0.378 5.378 20 C -0.374 4.374 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.246 0.754 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.036 0.964 40 H 0.219 0.781 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.521 1.545 25.128 25.579 hybrid contribution 0.123 0.006 -0.008 0.123 sum 4.644 1.551 25.120 25.593 Atomic orbital electron populations 1.21882 0.95030 1.01926 1.01630 1.21111 0.95911 0.99385 0.94029 0.91050 1.21981 0.94917 1.01350 0.98267 1.22401 0.94296 1.00114 0.86806 1.47902 1.41891 1.34393 1.08640 1.16469 0.79790 0.80241 0.85010 1.90911 1.60966 1.54075 1.30829 1.24066 1.00997 0.93233 0.93089 1.71361 1.13482 1.18617 1.15026 1.26754 1.00222 0.94083 0.89081 1.45320 1.35272 1.19979 1.12247 0.70447 1.74212 1.16520 1.21469 0.99799 1.21828 0.93947 0.99124 0.85014 1.21719 0.94280 1.00899 0.95218 0.90656 1.20717 0.96820 0.94034 0.85317 1.42422 1.65310 1.29295 1.00764 1.19150 1.28008 1.06408 0.83818 0.91333 1.24750 1.00831 0.97532 0.97737 1.69666 1.42157 1.17263 1.28591 0.86299 0.77925 0.77633 0.84483 1.21339 1.21729 1.21385 0.92812 0.93300 0.91632 0.91738 0.90982 0.86592 0.91519 0.75400 0.87587 0.91182 0.95510 0.96377 0.78053 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.81 37.16 0.33 -1.48 16 2 C -0.09 -1.10 2.23 -90.58 -0.20 -1.31 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.41 5.36 -26.61 -0.14 -1.56 16 5 C 0.09 1.03 6.09 -3.71 -0.02 1.01 16 6 N -0.59 -9.34 2.97 -173.87 -0.52 -9.86 16 7 C 0.60 10.84 7.69 -12.32 -0.09 10.74 16 8 O -0.50 -11.23 16.52 5.32 0.09 -11.14 16 9 C 0.17 2.44 7.66 -156.35 -1.20 1.25 16 10 N -0.46 -6.34 11.41 -12.36 -0.14 -6.49 16 11 C 0.20 1.42 13.14 -90.49 -1.19 0.23 16 12 N -0.41 -2.47 6.93 29.56 0.20 -2.26 16 13 H 0.45 0.53 8.96 -190.21 -1.71 -1.17 16 14 N -0.28 -2.94 8.78 32.08 0.28 -2.66 16 15 C 0.12 2.16 5.53 -3.71 -0.02 2.14 16 16 C -0.10 -1.73 1.92 -90.50 -0.17 -1.90 16 17 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 18 C 0.16 3.25 5.41 -4.04 -0.02 3.23 16 19 N -0.73 -19.31 5.38 -59.91 -0.32 -19.63 16 20 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -29.48 13.06 55.49 0.72 -28.76 16 24 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.12 1.28 4.20 -68.87 -0.29 0.99 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.23 0.38 8.06 -52.49 -0.42 -0.04 16 36 H 0.11 2.31 6.20 -51.93 -0.32 1.99 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.03 0.55 6.15 -51.93 -0.32 0.23 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.39 10.91 6.89 -40.82 -0.28 10.63 16 41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -38.36 331.43 -9.71 -48.07 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.02 Total: 4.86 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -2.98 Total: 4.73 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: 0.23 Total: -69.65 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -38.36 -9.71 -48.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133181570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.411 kcal (2) G-P(sol) polarization free energy of solvation -38.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds