Wall clock time and date at job start Fri Apr 10 2020 17:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.45089 * 2 1 4 4 C 1.53033 * 109.46128 * 119.97156 * 2 1 3 5 5 C 1.53197 * 109.31521 * 181.38362 * 4 2 1 6 6 N 1.46922 * 108.77588 * 305.36452 * 5 4 2 7 7 C 1.34772 * 120.63261 * 233.58514 * 6 5 4 8 8 O 1.21551 * 119.99968 * 172.90901 * 7 6 5 9 9 C 1.47876 * 119.99687 * 352.90588 * 7 6 5 10 10 N 1.34550 * 126.04345 * 172.23494 * 9 7 6 11 11 C 1.30869 * 107.26555 * 180.02562 * 10 9 7 12 12 N 1.34579 * 107.62717 * 0.02562 * 11 10 9 13 13 H 0.97000 * 125.74993 * 179.97438 * 12 11 10 14 14 N 1.28853 * 108.50502 * 359.72837 * 12 11 10 15 15 C 1.46924 * 118.73699 * 53.60561 * 6 5 4 16 16 C 1.53047 * 109.45953 * 240.03908 * 2 1 3 17 17 H 1.08999 * 109.49290 * 298.56459 * 16 2 1 18 18 C 1.52996 * 109.49877 * 58.65987 * 16 2 1 19 19 N 1.46499 * 109.47494 * 184.84006 * 18 16 2 20 20 C 1.36931 * 120.00357 * 180.02562 * 19 18 16 21 21 H 1.08007 * 120.00006 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99820 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00157 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99672 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47334 * 59.99912 * 24 22 20 26 26 H 1.48502 * 109.46991 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47055 * 300.00081 * 24 22 20 28 28 H 1.09002 * 109.47003 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47114 * 299.96225 * 1 2 3 30 30 H 1.09000 * 109.47535 * 59.96570 * 1 2 3 31 31 H 1.09000 * 109.50441 * 61.43005 * 4 2 1 32 32 H 1.09002 * 109.49892 * 301.33228 * 4 2 1 33 33 H 1.08994 * 109.58916 * 185.57337 * 5 4 2 34 34 H 1.09007 * 109.69754 * 65.22192 * 5 4 2 35 35 H 1.07998 * 126.18594 * 179.97438 * 11 10 9 36 36 H 1.09006 * 109.59003 * 186.60592 * 15 6 5 37 37 H 1.08999 * 109.59153 * 66.18235 * 15 6 5 38 38 H 1.08998 * 109.47296 * 304.84357 * 18 16 2 39 39 H 1.08999 * 109.47098 * 64.83735 * 18 16 2 40 40 H 0.97007 * 119.99527 * 0.02562 * 19 18 16 41 41 H 0.97000 * 119.99855 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2499 5 6 3.5714 -0.6887 1.2641 6 7 4.0679 -1.2489 -0.0001 7 6 4.9621 -2.2572 -0.0003 8 8 5.2679 -2.7982 -1.0449 9 6 5.5711 -2.7054 1.2705 10 7 6.3576 -3.7848 1.4342 11 6 6.6892 -3.8356 2.6991 12 7 6.1079 -2.7897 3.3151 13 1 6.1802 -2.5759 4.2585 14 7 5.4434 -2.1171 2.4397 15 6 3.5714 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2502 17 1 1.6978 -1.7555 -1.2384 18 6 1.5027 -0.0188 -2.4990 19 7 1.8949 -0.7748 -3.6910 20 6 1.5248 -0.3344 -4.9336 21 1 0.9441 0.5706 -5.0351 22 6 1.8969 -1.0506 -6.0630 23 7 2.6049 -2.1532 -5.9395 24 14 1.3925 -0.4495 -7.7583 25 1 1.9552 0.9049 -7.9909 26 1 1.9099 -1.3847 -8.7893 27 1 -0.0890 -0.3911 -7.8423 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5133 0.8904 30 1 -0.3634 0.5143 -0.8896 31 1 1.6978 -1.7557 1.2382 32 1 1.6573 -0.2208 2.1398 33 1 3.9417 -1.2846 2.0982 34 1 3.9164 0.3401 1.3685 35 1 7.3153 -4.5823 3.1647 36 1 3.9416 -1.2844 -2.0986 37 1 3.9143 0.3410 -1.3674 38 1 0.4155 0.0367 -2.4454 39 1 1.9155 0.9885 -2.5556 40 1 2.4167 -1.5874 -3.5999 41 1 2.8646 -2.6538 -6.7287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133181570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:27 Heat of formation + Delta-G solvation = 46.830525 kcal Electronic energy + Delta-G solvation = -23934.038271 eV Core-core repulsion = 20464.353963 eV Total energy + Delta-G solvation = -3469.684308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.52196 -41.25662 -39.17403 -36.65892 -35.20046 -34.47616 -33.54403 -32.68842 -31.33649 -29.37715 -27.54127 -25.81847 -24.91797 -23.91866 -23.68287 -22.58561 -21.37451 -20.53253 -19.38961 -19.12426 -18.29441 -17.47679 -17.15241 -16.73009 -16.15061 -15.84116 -15.56961 -15.47707 -15.23089 -15.14140 -14.47807 -14.41226 -14.18343 -14.06129 -13.44938 -13.03482 -12.85555 -12.74070 -12.65219 -12.50374 -12.20311 -12.01984 -11.90570 -11.82483 -11.79204 -11.57984 -11.36860 -11.20946 -11.01715 -10.89321 -10.64976 -9.72826 -8.98012 -7.91871 -5.22695 0.19945 1.15870 1.45819 1.50230 1.51079 1.56883 1.98513 2.19329 2.57238 3.02633 3.40532 3.46044 3.67194 3.81901 3.86178 3.97428 4.06303 4.21563 4.30200 4.44906 4.57607 4.60457 4.75419 4.78977 4.81765 4.90268 4.95983 4.97430 5.08014 5.13367 5.23563 5.24488 5.33971 5.45541 5.49758 5.53924 5.59064 5.99939 6.24154 6.28092 6.85258 7.09850 7.33313 8.10410 8.32601 9.31496 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.004014 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.476928 B = 6973.345071 C = 8214.340073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.088 0.912 4 C -0.119 4.119 5 C 0.084 3.916 6 N -0.589 5.589 7 C 0.592 3.408 8 O -0.567 6.567 9 C 0.132 3.868 10 N -0.521 5.521 11 C 0.223 3.777 12 N -0.378 5.378 13 H 0.475 0.525 14 N -0.263 5.263 15 C 0.128 3.872 16 C -0.088 4.088 17 H 0.048 0.952 18 C 0.158 3.842 19 N -0.749 5.749 20 C -0.247 4.247 21 H 0.081 0.919 22 C -0.080 4.080 23 N -0.973 5.973 24 Si 0.978 3.022 25 H -0.275 1.275 26 H -0.298 1.298 27 H -0.275 1.275 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.286 0.714 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.027 0.973 40 H 0.369 0.631 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.191 3.174 29.926 30.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.157 4.157 5 C -0.038 4.038 6 N -0.321 5.321 7 C 0.378 3.622 8 O -0.442 6.442 9 C -0.147 4.147 10 N -0.247 5.247 11 C -0.073 4.073 12 N -0.103 5.103 13 H 0.327 0.673 14 N -0.106 5.106 15 C 0.005 3.995 16 C -0.108 4.108 17 H 0.066 0.934 18 C 0.032 3.968 19 N -0.392 5.392 20 C -0.379 4.379 21 H 0.098 0.902 22 C -0.272 4.272 23 N -0.624 5.624 24 Si 0.806 3.194 25 H -0.201 1.201 26 H -0.224 1.224 27 H -0.200 1.200 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.147 0.853 34 H 0.106 0.894 35 H 0.301 0.699 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.201 0.799 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.985 3.329 28.943 29.405 hybrid contribution 0.314 -0.508 -0.949 1.122 sum 4.300 2.821 27.994 28.462 Atomic orbital electron populations 1.21853 0.94111 1.01633 1.02557 1.21112 0.96581 0.99734 0.92348 0.89374 1.21973 0.94129 1.00894 0.98721 1.22736 0.94852 1.01192 0.84998 1.47984 1.41133 1.33735 1.09272 1.17059 0.79566 0.79863 0.85761 1.90856 1.63335 1.56444 1.33587 1.23280 1.03493 0.95118 0.92768 1.71259 1.15057 1.19537 1.18817 1.27657 0.98544 0.94000 0.87137 1.45315 1.33283 1.18846 1.12894 0.67319 1.74014 1.16431 1.21253 0.98946 1.21538 0.94496 0.98546 0.84895 1.21572 0.93514 0.99604 0.96110 0.93358 1.20915 0.97254 0.93926 0.84745 1.42698 1.65145 1.29286 1.02055 1.19653 1.26916 1.06318 0.84968 0.90152 1.25677 1.01554 0.97949 1.02008 1.69877 1.44255 1.19017 1.29204 0.85150 0.77984 0.77148 0.79096 1.20112 1.22418 1.20044 0.93751 0.90063 0.92970 0.92974 0.86874 0.85329 0.89398 0.69934 0.92810 0.90123 0.94659 0.95531 0.79904 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.81 71.98 0.63 -2.55 16 2 C -0.08 -1.88 2.23 -10.77 -0.02 -1.90 16 3 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.12 -2.31 5.36 30.67 0.16 -2.15 16 5 C 0.08 1.80 6.09 86.36 0.53 2.32 16 6 N -0.59 -19.13 2.97 -822.28 -2.44 -21.57 16 7 C 0.59 22.74 7.69 86.80 0.67 23.41 16 8 O -0.57 -28.28 16.52 -3.88 -0.06 -28.34 16 9 C 0.13 3.89 7.66 137.13 1.05 4.94 16 10 N -0.52 -14.18 11.41 -193.03 -2.20 -16.38 16 11 C 0.22 2.51 13.14 180.30 2.37 4.88 16 12 N -0.38 -3.17 6.93 -60.38 -0.42 -3.59 16 13 H 0.47 -1.19 8.96 -219.80 -1.97 -3.16 16 14 N -0.26 -4.95 8.78 -52.43 -0.46 -5.41 16 15 C 0.13 4.81 5.53 86.36 0.48 5.28 16 16 C -0.09 -3.09 1.92 -10.72 -0.02 -3.11 16 17 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 18 C 0.16 6.59 5.41 86.38 0.47 7.06 16 19 N -0.75 -41.27 5.38 -343.46 -1.85 -43.12 16 20 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 21 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 22 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 23 N -0.97 -64.71 13.06 21.65 0.28 -64.42 16 24 Si 0.98 48.67 29.55 68.60 2.03 50.70 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 27 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.05 1.29 6.30 -2.39 -0.02 1.27 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.13 2.49 4.20 -24.31 -0.10 2.39 16 34 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.29 -0.50 8.06 -2.91 -0.02 -0.53 16 36 H 0.05 2.61 6.20 -2.38 -0.01 2.59 16 37 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.04 1.44 6.15 -2.39 -0.01 1.42 16 39 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.37 22.50 6.89 -92.70 -0.64 21.86 16 41 H 0.25 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -92.29 331.43 0.86 -91.43 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -1.63 Total: 20.73 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 7.62 Total: 19.98 kcal Atomic # 7 Polarization: -147.40 SS G_CDS: -7.09 Total: -154.49 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.06 Total: -28.34 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -92.29 0.86 -91.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133181570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.258 kcal (2) G-P(sol) polarization free energy of solvation -92.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds