Wall clock time and date at job start Fri Apr 10 2020 17:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36229 * 126.45554 * 2 1 4 4 C 1.36196 * 106.97821 * 180.02562 * 3 2 1 5 5 N 1.40236 * 125.87719 * 179.97438 * 4 3 2 6 6 N 1.33314 * 108.24696 * 0.02562 * 4 3 2 7 7 C 1.31794 * 109.23299 * 359.97438 * 6 4 3 8 8 C 1.47275 * 125.77378 * 179.73455 * 7 6 4 9 9 O 1.21625 * 119.99894 * 186.68587 * 8 7 6 10 10 N 1.34773 * 119.99981 * 6.69321 * 8 7 6 11 11 C 1.47077 * 120.88573 * 6.17461 * 10 8 7 12 12 C 1.53691 * 108.28296 * 128.75577 * 11 10 8 13 13 N 1.46899 * 109.25296 * 54.08196 * 12 11 10 14 14 C 1.46904 * 110.99825 * 172.60772 * 13 12 11 15 15 C 1.50702 * 109.47412 * 294.30472 * 14 13 12 16 16 H 1.07990 * 119.99778 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99946 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00000 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00279 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47058 * 89.99788 * 19 17 15 21 21 H 1.48494 * 109.47166 * 210.00213 * 19 17 15 22 22 H 1.48505 * 109.46740 * 329.99600 * 19 17 15 23 23 C 1.46896 * 111.27369 * 296.76085 * 13 12 11 24 24 C 1.47081 * 120.88330 * 186.45596 * 10 8 7 25 25 H 1.08999 * 109.46933 * 269.95965 * 1 2 3 26 26 H 1.09005 * 109.46906 * 29.95672 * 1 2 3 27 27 H 1.08998 * 109.47374 * 149.95552 * 1 2 3 28 28 H 1.07997 * 126.50814 * 0.03741 * 3 2 1 29 29 H 0.96994 * 120.00080 * 180.02562 * 5 4 3 30 30 H 0.96997 * 119.99667 * 359.97438 * 5 4 3 31 31 H 1.09000 * 109.63103 * 248.52661 * 11 10 8 32 32 H 1.09003 * 109.62837 * 9.10087 * 11 10 8 33 33 H 1.09000 * 109.64693 * 294.08770 * 12 11 10 34 34 H 1.08994 * 109.42693 * 173.95000 * 12 11 10 35 35 H 1.09000 * 109.47177 * 54.30562 * 14 13 12 36 36 H 1.09003 * 109.47059 * 174.30137 * 14 13 12 37 37 H 0.97002 * 120.00169 * 180.02562 * 18 17 15 38 38 H 1.09007 * 109.49219 * 303.14682 * 23 13 12 39 39 H 1.08994 * 109.49384 * 183.06389 * 23 13 12 40 40 H 1.09006 * 109.62375 * 350.89121 * 24 10 8 41 41 H 1.08994 * 109.63149 * 111.47142 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2745 1.0957 0.0000 4 6 3.5585 0.6416 -0.0006 5 7 4.7122 1.4388 -0.0013 6 7 3.5299 -0.6912 -0.0015 7 6 2.2765 -1.0986 -0.0010 8 6 1.8270 -2.5010 -0.0072 9 8 0.6449 -2.7602 -0.1287 10 7 2.7255 -3.4972 0.1219 11 6 4.1393 -3.2068 0.4046 12 6 4.5737 -4.0542 1.6110 13 7 4.2716 -5.4669 1.3446 14 6 4.8280 -6.3312 2.3941 15 6 6.3330 -6.2649 2.3540 16 1 6.8268 -5.6434 1.6218 17 6 7.0795 -6.9979 3.2520 18 7 8.3928 -6.9397 3.2173 19 14 6.2254 -8.0737 4.5180 20 1 6.0230 -9.4334 3.9564 21 1 7.0652 -8.1625 5.7395 22 1 4.9090 -7.4801 4.8645 23 6 2.8265 -5.6839 1.1951 24 6 2.3194 -4.9035 -0.0223 25 1 -0.3633 -0.0007 1.0277 26 1 -0.3633 0.8904 -0.5132 27 1 -0.3634 -0.8896 -0.5145 28 1 1.9581 2.1283 0.0006 29 1 5.5887 1.0235 -0.0021 30 1 4.6336 2.4056 -0.0018 31 1 4.7464 -3.4624 -0.4638 32 1 4.2562 -2.1485 0.6378 33 1 4.0347 -3.7286 2.5007 34 1 5.6453 -3.9352 1.7705 35 1 4.4753 -5.9928 3.3683 36 1 4.5050 -7.3588 2.2276 37 1 8.9180 -7.4557 3.8489 38 1 2.3118 -5.3355 2.0906 39 1 2.6311 -6.7467 1.0530 40 1 1.2323 -4.9675 -0.0714 41 1 2.7549 -5.3191 -0.9309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160483256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:55 Heat of formation + Delta-G solvation = 41.535366 kcal Electronic energy + Delta-G solvation = -23918.988985 eV Core-core repulsion = 20449.075062 eV Total energy + Delta-G solvation = -3469.913923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.22804 -40.90584 -38.99252 -36.31410 -35.70365 -34.52560 -33.74285 -32.19150 -30.61468 -29.75320 -28.06860 -27.07531 -24.84021 -24.28152 -23.00081 -22.05707 -21.71986 -20.19699 -18.93865 -18.30868 -17.97913 -17.22665 -17.18419 -16.57454 -16.36065 -16.06780 -16.01028 -15.92611 -15.60096 -15.19628 -14.84620 -14.52357 -14.42380 -14.27733 -14.07138 -13.78496 -13.49386 -13.16374 -12.88593 -12.53635 -12.41048 -12.22968 -11.99367 -11.84108 -11.65763 -11.45133 -11.35361 -10.76998 -10.64889 -10.33693 -9.85546 -9.07156 -8.34650 -8.26728 -6.29948 0.25269 1.35664 1.36811 1.39559 1.47169 1.71431 2.12352 2.34820 2.35250 2.75683 3.05803 3.19521 3.39377 3.75306 3.98898 4.06062 4.12273 4.21316 4.33668 4.38675 4.41400 4.43485 4.59701 4.73125 4.77737 4.82889 4.86987 4.93401 5.03172 5.10631 5.23966 5.30658 5.50180 5.59145 5.89150 5.94052 6.20128 6.30810 6.51913 6.61995 6.73064 6.76035 6.91423 7.33416 7.42895 8.89582 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.003929 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.807987 B = 7124.009849 C = 8026.278360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.403 5.403 3 C -0.085 4.085 4 C 0.261 3.739 5 N -0.848 5.848 6 N -0.499 5.499 7 C 0.130 3.870 8 C 0.603 3.397 9 O -0.567 6.567 10 N -0.587 5.587 11 C 0.100 3.900 12 C 0.058 3.942 13 N -0.540 5.540 14 C 0.171 3.829 15 C -0.515 4.515 16 H 0.042 0.958 17 C 0.011 3.989 18 N -0.946 5.946 19 Si 0.945 3.055 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.256 1.256 23 C 0.041 3.959 24 C 0.124 3.876 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.220 0.780 29 H 0.404 0.596 30 H 0.419 0.581 31 H 0.067 0.933 32 H 0.147 0.853 33 H 0.016 0.984 34 H 0.073 0.927 35 H -0.017 1.017 36 H 0.034 0.966 37 H 0.267 0.733 38 H 0.024 0.976 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.644 18.136 -6.644 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.085 5.085 3 C -0.225 4.225 4 C 0.030 3.970 5 N -0.400 5.400 6 N -0.231 5.231 7 C -0.127 4.127 8 C 0.391 3.609 9 O -0.447 6.447 10 N -0.318 5.318 11 C -0.023 4.023 12 C -0.071 4.071 13 N -0.264 5.264 14 C 0.044 3.956 15 C -0.554 4.554 16 H 0.060 0.940 17 C -0.187 4.187 18 N -0.586 5.586 19 Si 0.769 3.231 20 H -0.188 1.188 21 H -0.208 1.208 22 H -0.180 1.180 23 C -0.088 4.088 24 C 0.002 3.998 25 H 0.106 0.894 26 H 0.140 0.860 27 H 0.109 0.891 28 H 0.237 0.763 29 H 0.232 0.768 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.001 0.999 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.546 17.182 -7.074 24.880 hybrid contribution -0.197 0.141 1.451 1.471 sum -16.743 17.323 -5.623 24.739 Atomic orbital electron populations 1.22525 0.73400 1.06609 1.05148 1.45054 1.09100 1.04801 1.49593 1.22650 0.88606 0.93741 1.17508 1.18116 0.88690 0.87789 1.02451 1.41279 1.03346 1.07351 1.88019 1.69577 1.18299 1.11498 1.23731 1.21945 0.85618 0.89931 1.15160 1.16665 0.84836 0.82658 0.76757 1.90719 1.16291 1.84032 1.53663 1.47926 1.09774 1.06222 1.67865 1.22872 0.78905 1.03660 0.96855 1.22383 1.00995 0.87853 0.95877 1.61858 1.11853 1.05678 1.47030 1.19955 0.94142 0.93058 0.88416 1.21227 0.90692 1.27132 1.16309 0.93973 1.25788 0.95296 0.98087 0.99497 1.70039 1.06416 1.43384 1.38800 0.85747 0.79101 0.79692 0.78572 1.18790 1.20791 1.17980 1.22526 0.87952 1.01416 0.96899 1.21828 1.01275 0.78359 0.98317 0.89371 0.85994 0.89052 0.76304 0.76751 0.74931 0.91508 0.83642 0.96585 0.90883 0.99909 0.94815 0.92427 0.95755 0.88328 0.87836 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 10.71 127.77 1.37 2.29 16 2 N -0.40 -8.52 3.18 -538.53 -1.71 -10.23 16 3 C -0.08 -1.45 11.61 83.53 0.97 -0.48 16 4 C 0.26 5.74 8.29 131.67 1.09 6.83 16 5 N -0.85 -13.08 9.17 -55.92 -0.51 -13.60 16 6 N -0.50 -14.21 7.66 -186.45 -1.43 -15.64 16 7 C 0.13 3.72 7.50 136.22 1.02 4.74 16 8 C 0.60 19.15 7.68 86.62 0.66 19.81 16 9 O -0.57 -18.62 14.10 -4.11 -0.06 -18.68 16 10 N -0.59 -19.10 3.00 -821.11 -2.47 -21.57 16 11 C 0.10 3.44 6.25 86.50 0.54 3.98 16 12 C 0.06 2.35 5.47 86.54 0.47 2.83 16 13 N -0.54 -22.86 4.62 -898.90 -4.15 -27.01 16 14 C 0.17 8.33 3.79 85.56 0.32 8.65 16 15 C -0.52 -29.91 8.96 25.60 0.23 -29.68 16 16 H 0.04 2.71 7.37 -2.92 -0.02 2.69 16 17 C 0.01 0.63 5.47 84.65 0.46 1.09 16 18 N -0.95 -59.12 13.96 21.44 0.30 -58.82 16 19 Si 0.95 44.29 27.47 68.60 1.88 46.18 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.26 -11.36 6.54 99.48 0.65 -10.71 16 23 C 0.04 1.39 5.62 86.38 0.49 1.87 16 24 C 0.12 3.75 6.61 86.35 0.57 4.32 16 25 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.09 1.70 6.21 -2.39 -0.01 1.69 16 28 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 29 H 0.40 6.43 8.96 -92.71 -0.83 5.60 16 30 H 0.42 3.62 8.96 -92.71 -0.83 2.79 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.15 4.91 4.26 -16.18 -0.07 4.84 16 33 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 3.36 6.67 -2.39 -0.02 3.34 16 35 H -0.02 -0.83 7.18 -2.39 -0.02 -0.84 16 36 H 0.03 1.58 7.40 -2.39 -0.02 1.57 16 37 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 38 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.10 3.02 7.99 -2.39 -0.02 3.00 16 40 H 0.10 2.87 7.04 -2.38 -0.02 2.85 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -74.38 329.11 -0.64 -75.02 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.70 Total: 18.09 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: 8.20 Total: 26.26 kcal Atomic # 7 Polarization: -136.90 SS G_CDS: -9.97 Total: -146.86 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.06 Total: -18.68 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -74.38 -0.64 -75.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160483256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.556 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds