Wall clock time and date at job start Fri Apr 10 2020 17:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28516 * 124.44214 * 2 1 4 4 C 1.31128 * 109.06037 * 180.02562 * 3 2 1 5 5 C 1.40922 * 105.77712 * 0.26506 * 4 3 2 6 6 C 1.47795 * 127.23878 * 179.70920 * 5 4 3 7 7 O 1.21564 * 120.00449 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00428 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00295 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47048 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47261 * 175.02293 * 10 9 8 12 12 C 1.53005 * 115.55051 * 278.03707 * 11 10 9 13 13 N 1.46504 * 109.46818 * 303.89682 * 12 11 10 14 14 C 1.36929 * 119.99658 * 175.59421 * 13 12 11 15 15 H 1.08003 * 120.00628 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99767 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00013 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00104 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47190 * 60.00461 * 18 16 14 20 20 H 1.48501 * 109.47340 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47167 * 300.00097 * 18 16 14 22 22 C 1.53000 * 117.50186 * 132.32360 * 11 10 9 23 23 C 1.53001 * 117.49615 * 63.70024 * 11 10 9 24 24 N 1.28589 * 124.44538 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47317 * 89.97502 * 1 2 3 26 26 H 1.09001 * 109.46856 * 209.96940 * 1 2 3 27 27 H 1.08996 * 109.47407 * 329.97106 * 1 2 3 28 28 H 1.08008 * 127.11140 * 179.97438 * 4 3 2 29 29 H 0.96997 * 119.99177 * 359.97438 * 8 6 5 30 30 H 1.08998 * 109.47364 * 299.99558 * 9 8 6 31 31 H 1.09000 * 109.47020 * 60.00072 * 9 8 6 32 32 H 1.09002 * 109.46847 * 295.02548 * 10 9 8 33 33 H 1.08999 * 109.46779 * 55.02134 * 10 9 8 34 34 H 1.09000 * 109.47084 * 63.89331 * 12 11 10 35 35 H 1.08996 * 109.46933 * 183.89793 * 12 11 10 36 36 H 0.97003 * 119.99978 * 355.59322 * 13 12 11 37 37 H 0.96998 * 120.00042 * 179.97438 * 17 16 14 38 38 H 1.09001 * 117.49159 * 0.02562 * 22 11 10 39 39 H 1.08998 * 117.50114 * 145.02224 * 22 11 10 40 40 H 1.09008 * 117.50042 * 214.97873 * 23 11 10 41 41 H 1.08999 * 117.50182 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1918 1.0599 0.0000 4 6 3.4561 0.7121 -0.0006 5 6 3.4659 -0.6971 -0.0072 6 6 4.6486 -1.5833 -0.0163 7 8 5.7663 -1.1053 -0.0193 8 7 4.4881 -2.9215 -0.0214 9 6 5.6605 -3.7999 -0.0310 10 6 5.2037 -5.2601 -0.0345 11 6 6.4222 -6.1754 -0.1696 12 6 6.9430 -6.3748 -1.5945 13 7 5.8612 -6.8799 -2.4435 14 6 6.0675 -7.0497 -3.7865 15 1 7.0278 -6.8117 -4.2198 16 6 5.0427 -7.5288 -4.5910 17 7 3.8726 -7.8193 -4.0629 18 14 5.3242 -7.7612 -6.4229 19 1 6.4293 -8.7301 -6.6349 20 1 4.0832 -8.2796 -7.0527 21 1 5.6835 -6.4580 -7.0378 22 6 6.5265 -7.3598 0.7933 23 6 7.4516 -6.1529 0.9621 24 7 2.1923 -1.0604 -0.0005 25 1 -0.3634 0.0004 -1.0276 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3634 0.8897 0.5143 28 1 4.3129 1.3697 -0.0011 29 1 3.5963 -3.3029 -0.0187 30 1 6.2549 -3.6027 -0.9231 31 1 6.2637 -3.6104 0.8569 32 1 4.6851 -5.4808 0.8986 33 1 4.5286 -5.4276 -0.8737 34 1 7.2991 -5.4226 -1.9877 35 1 7.7627 -7.0932 -1.5844 36 1 4.9989 -7.0940 -2.0543 37 1 3.1564 -8.1538 -4.6251 38 1 5.7267 -7.4871 1.5228 39 1 6.9660 -8.2814 0.4119 40 1 8.4999 -6.2805 0.6916 41 1 7.2605 -5.4863 1.8031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167452595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:04 Heat of formation + Delta-G solvation = 83.248157 kcal Electronic energy + Delta-G solvation = -22781.567339 eV Core-core repulsion = 19313.462219 eV Total energy + Delta-G solvation = -3468.105120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.72960 -40.69648 -39.48589 -36.14818 -35.76567 -34.81345 -33.81531 -32.78047 -31.18710 -28.92997 -27.79708 -25.75777 -24.60370 -24.01451 -23.14111 -22.89662 -21.62687 -20.01469 -19.10641 -18.76881 -18.06328 -17.91937 -17.05220 -16.80043 -16.55550 -16.06782 -15.79607 -15.57885 -15.24456 -14.95814 -14.75609 -14.22920 -13.91318 -13.82327 -13.65852 -13.16015 -13.09830 -12.96319 -12.75960 -12.56934 -12.26311 -12.16050 -12.14647 -11.92542 -11.86441 -11.57827 -11.39738 -11.07184 -10.89621 -10.54877 -10.52716 -10.12821 -8.95747 -7.93761 -5.20953 0.16339 0.84666 1.23930 1.46521 1.49122 1.55026 2.01710 2.12875 2.55329 2.84073 2.92452 3.39453 3.69046 3.85436 3.86546 3.96309 4.01501 4.10179 4.25758 4.29455 4.31207 4.42087 4.46989 4.50342 4.64780 4.66457 4.87108 4.90389 4.96249 4.99589 5.10407 5.18846 5.28241 5.36313 5.36678 5.40063 5.50034 5.50255 6.28723 6.34833 6.95586 7.05789 7.35969 8.12664 8.38238 9.29361 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.003672 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.444792 B = 7622.984555 C = 9065.180768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.135 5.135 3 N -0.297 5.297 4 C 0.031 3.969 5 C -0.068 4.068 6 C 0.607 3.393 7 O -0.560 6.560 8 N -0.704 5.704 9 C 0.134 3.866 10 C -0.079 4.079 11 C -0.141 4.141 12 C 0.188 3.812 13 N -0.736 5.736 14 C -0.248 4.248 15 H 0.070 0.930 16 C -0.070 4.070 17 N -0.965 5.965 18 Si 0.969 3.031 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.281 1.281 22 C -0.164 4.164 23 C -0.149 4.149 24 N -0.255 5.255 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.129 0.871 28 H 0.225 0.775 29 H 0.413 0.587 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.017 0.983 35 H 0.015 0.985 36 H 0.377 0.623 37 H 0.251 0.749 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.591 14.071 14.347 20.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.040 5.040 3 N -0.138 5.138 4 C -0.152 4.152 5 C -0.229 4.229 6 C 0.391 3.609 7 O -0.438 6.438 8 N -0.355 5.355 9 C 0.011 3.989 10 C -0.117 4.117 11 C -0.142 4.142 12 C 0.061 3.939 13 N -0.379 5.379 14 C -0.380 4.380 15 H 0.088 0.912 16 C -0.263 4.263 17 N -0.616 5.616 18 Si 0.798 3.202 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.201 4.201 23 C -0.186 4.186 24 N -0.105 5.105 25 H 0.127 0.873 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.242 0.758 29 H 0.250 0.750 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.210 0.790 37 H 0.060 0.940 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.051 14.386 14.192 21.094 hybrid contribution 0.245 -0.588 -1.289 1.438 sum -5.806 13.797 12.903 19.763 Atomic orbital electron populations 1.22808 0.66806 1.08245 1.07132 1.48646 1.10733 0.98520 1.46061 1.74017 1.03811 1.15820 1.20145 1.25178 0.95040 0.93377 1.01605 1.22928 0.91250 0.95315 1.13421 1.16795 0.86062 0.81877 0.76147 1.90787 1.24990 1.75947 1.52052 1.45844 1.11463 1.05063 1.73107 1.21306 0.87040 0.88540 1.02038 1.21116 0.96258 0.91528 1.02828 1.21386 0.99409 1.01941 0.91416 1.20238 0.90153 0.95296 0.88184 1.42447 1.12539 1.78422 1.04474 1.19581 0.97298 1.35223 0.85860 0.91194 1.25466 0.95892 1.02801 1.02098 1.69792 1.03556 1.52379 1.35868 0.85286 0.76508 0.77860 0.80559 1.20464 1.21908 1.20782 1.23058 1.03061 0.92625 1.01398 1.23067 0.96024 1.00748 0.98808 1.74361 1.02925 1.16530 1.16677 0.87254 0.85834 0.85305 0.75843 0.75048 0.93265 0.89966 0.89255 0.92375 0.96493 0.96736 0.79037 0.94015 0.87439 0.89885 0.88359 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 11.55 127.77 1.48 2.16 16 2 N -0.13 -2.62 4.34 -206.55 -0.90 -3.52 16 3 N -0.30 -6.44 12.01 -56.16 -0.67 -7.11 16 4 C 0.03 0.70 12.04 85.46 1.03 1.73 16 5 C -0.07 -1.80 7.21 42.24 0.30 -1.50 16 6 C 0.61 18.29 7.83 86.77 0.68 18.97 16 7 O -0.56 -19.76 16.95 -3.92 -0.07 -19.83 16 8 N -0.70 -19.59 5.55 -466.02 -2.59 -22.18 16 9 C 0.13 3.85 5.49 86.38 0.47 4.32 16 10 C -0.08 -2.32 5.20 30.59 0.16 -2.16 16 11 C -0.14 -4.37 1.65 -52.18 -0.09 -4.45 16 12 C 0.19 7.69 6.15 86.38 0.53 8.22 16 13 N -0.74 -37.65 5.23 -343.44 -1.80 -39.44 16 14 C -0.25 -14.10 9.99 84.04 0.84 -13.26 16 15 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 16 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 17 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 18 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 C -0.16 -4.43 9.87 30.60 0.30 -4.13 16 23 C -0.15 -3.54 9.57 30.60 0.29 -3.25 16 24 N -0.25 -6.10 11.84 -48.17 -0.57 -6.67 16 25 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.23 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.41 10.42 8.24 -92.71 -0.76 9.66 16 30 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16 31 H 0.08 2.13 7.72 -2.39 -0.02 2.11 16 32 H 0.09 2.12 7.93 -2.39 -0.02 2.11 16 33 H 0.06 2.10 6.94 -2.39 -0.02 2.08 16 34 H 0.02 0.73 7.96 -2.39 -0.02 0.71 16 35 H 0.01 0.61 8.10 -2.39 -0.02 0.59 16 36 H 0.38 20.21 6.80 -92.71 -0.63 19.58 16 37 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 38 H 0.11 2.50 8.07 -2.39 -0.02 2.48 16 39 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.11 2.22 7.90 -2.39 -0.02 2.20 16 Total: -1.00 -74.19 354.44 1.85 -72.34 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.34 Total: 33.20 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.47 Total: 3.07 kcal Atomic # 7 Polarization: -131.28 SS G_CDS: -6.24 Total: -137.53 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.07 Total: -19.83 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.19 1.85 -72.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167452595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.590 kcal (2) G-P(sol) polarization free energy of solvation -74.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds