Wall clock time and date at job start Fri Apr 10 2020 17:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.64461 * 2 1 4 4 C 1.54340 * 110.85399 * 236.83404 * 2 1 3 5 5 N 1.47025 * 107.26820 * 219.67582 * 4 2 1 6 6 C 1.36928 * 125.64594 * 178.84878 * 5 4 2 7 7 H 1.08005 * 120.00499 * 343.72989 * 6 5 4 8 8 C 1.38816 * 120.00066 * 163.73519 * 6 5 4 9 9 N 1.31613 * 120.00174 * 157.02119 * 8 6 5 10 10 Si 1.86805 * 119.99712 * 336.75111 * 8 6 5 11 11 H 1.48494 * 109.47317 * 89.99648 * 10 8 6 12 12 H 1.48500 * 109.47235 * 209.99997 * 10 8 6 13 13 H 1.48498 * 109.46746 * 329.99859 * 10 8 6 14 14 C 1.47429 * 108.70060 * 358.58663 * 5 4 2 15 15 C 1.54909 * 104.83245 * 24.35393 * 14 5 4 16 16 H 1.08998 * 111.00555 * 81.06799 * 15 14 5 17 17 N 1.46504 * 111.00203 * 204.87994 * 15 14 5 18 18 C 1.34777 * 119.99913 * 273.55180 * 17 15 14 19 19 O 1.21286 * 119.99839 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99919 * 180.02562 * 18 17 15 21 21 C 1.53007 * 109.46905 * 179.97438 * 20 18 17 22 22 N 1.46498 * 109.46638 * 179.97438 * 21 20 18 23 23 C 1.34434 * 126.82527 * 124.71046 * 22 21 20 24 24 N 1.30825 * 108.07723 * 179.88912 * 23 22 21 25 25 C 1.33239 * 109.83107 * 0.37901 * 24 23 22 26 26 N 1.30711 * 108.94709 * 359.76388 * 25 24 23 27 27 H 1.08993 * 109.47277 * 296.86023 * 1 2 3 28 28 H 1.09004 * 109.46376 * 56.85805 * 1 2 3 29 29 H 1.09000 * 109.47338 * 176.85488 * 1 2 3 30 30 H 1.08998 * 109.99170 * 100.19976 * 4 2 1 31 31 H 1.08997 * 109.77695 * 339.03012 * 4 2 1 32 32 H 0.96997 * 120.00468 * 4.36375 * 9 8 6 33 33 H 1.08995 * 110.36282 * 143.19775 * 14 5 4 34 34 H 1.09007 * 110.36360 * 265.40503 * 14 5 4 35 35 H 0.96997 * 120.00291 * 93.54758 * 17 15 14 36 36 H 1.09004 * 109.46781 * 299.99274 * 20 18 17 37 37 H 1.08995 * 109.47140 * 59.99458 * 20 18 17 38 38 H 1.09004 * 109.46955 * 299.99347 * 21 20 18 39 39 H 1.08990 * 109.47155 * 59.99584 * 21 20 18 40 40 H 1.08004 * 125.95779 * 0.03090 * 23 22 21 41 41 H 1.07998 * 125.52193 * 179.72606 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0794 -0.7890 -1.2073 5 7 3.2445 -1.5520 -0.7364 6 6 4.0043 -2.3995 -1.4977 7 1 3.6286 -2.7582 -2.4446 8 6 5.2574 -2.7976 -1.0524 9 7 5.7929 -3.9118 -1.5041 10 14 6.1868 -1.7480 0.1822 11 1 5.8352 -2.1763 1.5599 12 1 7.6475 -1.9115 -0.0295 13 1 5.8164 -0.3219 -0.0026 14 6 3.4632 -1.2487 0.6897 15 6 2.0789 -0.7935 1.2151 16 1 1.4450 -1.6511 1.4402 17 7 2.2213 0.0729 2.3879 18 6 2.3154 -0.4689 3.6184 19 8 2.2817 -1.6736 3.7548 20 6 2.4614 0.4223 4.8249 21 6 2.5458 -0.4382 6.0873 22 7 2.6883 0.4282 7.2600 23 6 1.9013 0.4450 8.3498 24 7 2.3613 1.3556 9.1688 25 6 3.4311 1.9442 8.6355 26 7 3.6707 1.4104 7.4666 27 1 -0.3633 0.4643 0.9167 28 1 -0.3632 0.5619 -0.8605 29 1 -0.3634 -1.0261 -0.0564 30 1 2.3815 -0.1003 -1.9963 31 1 1.3157 -1.4714 -1.5804 32 1 5.3413 -4.4219 -2.1945 33 1 3.7959 -2.1406 1.2205 34 1 4.1946 -0.4479 0.7994 35 1 2.2479 1.0363 2.2789 36 1 3.3695 1.0176 4.7292 37 1 1.5984 1.0845 4.8940 38 1 1.6374 -1.0331 6.1829 39 1 3.4085 -1.1007 6.0184 40 1 1.0409 -0.1851 8.5205 41 1 4.0065 2.7346 9.0943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206046964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:21 Heat of formation + Delta-G solvation = 78.406820 kcal Electronic energy + Delta-G solvation = -23338.471808 eV Core-core repulsion = 19870.156751 eV Total energy + Delta-G solvation = -3468.315057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31673 -40.00295 -38.02514 -35.10518 -34.22566 -32.85354 -31.48841 -31.03902 -30.89134 -28.06789 -26.06360 -25.27729 -23.15990 -22.26261 -21.81778 -20.89360 -20.53924 -19.65381 -17.92787 -17.46621 -16.74606 -16.45501 -16.11065 -15.51232 -15.15769 -14.85481 -14.41185 -14.34374 -13.93515 -13.73129 -13.56106 -13.06707 -12.99571 -12.83784 -12.52316 -12.35342 -11.99001 -11.82288 -11.60132 -11.16627 -11.11518 -10.76904 -10.51899 -10.34111 -10.17774 -10.12752 -10.04621 -9.81541 -9.67551 -9.25142 -8.91078 -8.50477 -7.09376 -6.32879 -3.24948 1.34843 1.96295 2.55298 2.69542 3.13397 3.44003 3.49696 3.65408 4.04218 4.13926 4.37479 4.52468 4.58874 4.70760 4.80664 4.85573 4.97942 5.03895 5.11763 5.20418 5.35272 5.43845 5.51195 5.64583 5.69324 5.80451 5.91463 5.94203 6.06736 6.14522 6.18717 6.34267 6.48384 6.49164 6.57233 6.71044 6.73533 7.47163 7.71193 7.79323 8.16579 8.33265 9.01577 9.56543 10.23019 11.14532 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.003730 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.383763 B = 7504.172652 C = 8510.579359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.140 3.860 5 N -0.606 5.606 6 C -0.329 4.329 7 H 0.076 0.924 8 C -0.016 4.016 9 N -0.920 5.920 10 Si 1.063 2.937 11 H -0.293 1.293 12 H -0.298 1.298 13 H -0.288 1.288 14 C 0.101 3.899 15 C 0.135 3.865 16 H 0.099 0.901 17 N -0.715 5.715 18 C 0.516 3.484 19 O -0.535 6.535 20 C -0.152 4.152 21 C 0.144 3.856 22 N -0.378 5.378 23 C 0.255 3.745 24 N -0.551 5.551 25 C 0.196 3.804 26 N -0.318 5.318 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.399 0.601 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.219 0.781 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.433 13.027 15.512 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.456 4.456 7 H 0.093 0.907 8 C -0.217 4.217 9 N -0.560 5.560 10 Si 0.895 3.105 11 H -0.220 1.220 12 H -0.225 1.225 13 H -0.215 1.215 14 C -0.026 4.026 15 C 0.030 3.970 16 H 0.117 0.883 17 N -0.366 5.366 18 C 0.301 3.699 19 O -0.412 6.412 20 C -0.193 4.193 21 C 0.022 3.978 22 N -0.168 5.168 23 C -0.042 4.042 24 N -0.278 5.278 25 C -0.107 4.107 26 N -0.146 5.146 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.233 0.767 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.236 0.764 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -9.578 12.374 16.197 22.521 hybrid contribution -1.460 0.347 -1.139 1.884 sum -11.038 12.720 15.058 22.592 Atomic orbital electron populations 1.21738 0.94416 1.02164 1.01202 1.22449 0.95736 0.99293 0.95530 0.90387 1.21408 0.90473 0.93091 0.93671 1.44667 1.32880 1.51243 1.04555 1.20017 0.98205 1.22376 1.05048 0.90650 1.25904 0.94353 0.98258 1.03207 1.70897 1.44621 1.11491 1.28977 0.83849 0.75723 0.75473 0.75476 1.22026 1.22542 1.21515 1.22314 0.94227 0.99299 0.86736 1.22346 0.98629 0.93061 0.82995 0.88264 1.45934 1.74151 1.10362 1.06133 1.20244 0.76463 0.88891 0.84296 1.90771 1.49471 1.14861 1.86106 1.21867 1.05919 0.99250 0.92279 1.21597 1.05768 0.90062 0.80379 1.50650 1.21231 1.28451 1.16506 1.26118 0.97116 0.97105 0.83834 1.70549 1.13604 1.11790 1.31873 1.26025 0.94545 0.99945 0.90214 1.78066 1.11725 1.04894 1.19875 0.92959 0.92477 0.92284 0.95145 0.94880 0.92631 0.91800 0.95100 0.76666 0.87297 0.88354 0.86941 0.87974 0.76447 0.76738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.16 37.15 0.34 -1.26 16 2 C -0.11 -1.62 3.16 -88.78 -0.28 -1.90 16 3 H 0.08 1.02 7.99 -51.93 -0.42 0.60 16 4 C 0.14 2.71 6.85 -3.05 -0.02 2.69 16 5 N -0.61 -14.88 3.23 -170.06 -0.55 -15.43 16 6 C -0.33 -9.52 10.44 -15.06 -0.16 -9.68 16 7 H 0.08 2.29 8.06 -52.48 -0.42 1.86 16 8 C -0.02 -0.49 5.43 -17.43 -0.09 -0.58 16 9 N -0.92 -29.21 13.70 55.49 0.76 -28.45 16 10 Si 1.06 27.45 24.69 -169.99 -4.20 23.26 16 11 H -0.29 -7.39 6.70 56.52 0.38 -7.01 16 12 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 13 H -0.29 -6.98 6.25 56.52 0.35 -6.63 16 14 C 0.10 2.22 4.40 -2.53 -0.01 2.21 16 15 C 0.13 2.24 2.77 -65.78 -0.18 2.06 16 16 H 0.10 1.80 7.63 -51.93 -0.40 1.40 16 17 N -0.72 -9.11 5.23 -51.73 -0.27 -9.38 16 18 C 0.52 6.68 7.83 -10.98 -0.09 6.59 16 19 O -0.54 -9.13 15.73 5.55 0.09 -9.04 16 20 C -0.15 -1.36 5.91 -27.88 -0.16 -1.52 16 21 C 0.14 1.26 5.84 -4.04 -0.02 1.24 16 22 N -0.38 -3.56 3.69 -62.63 -0.23 -3.80 16 23 C 0.26 2.09 12.63 -90.66 -1.14 0.94 16 24 N -0.55 -5.66 11.19 -15.83 -0.18 -5.84 16 25 C 0.20 1.90 13.03 -91.82 -1.20 0.71 16 26 N -0.32 -3.55 12.57 29.29 0.37 -3.18 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.64 7.77 -51.93 -0.40 0.24 16 32 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 33 H 0.06 1.61 6.52 -51.93 -0.34 1.27 16 34 H 0.03 0.70 5.45 -51.93 -0.28 0.41 16 35 H 0.40 3.78 8.52 -40.82 -0.35 3.43 16 36 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.11 0.77 8.04 -51.93 -0.42 0.35 16 39 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.22 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.22 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -37.08 339.25 -8.17 -45.25 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.05 Total: -0.01 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.02 Total: 1.50 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.10 Total: -66.07 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 27.45 SS G_CDS: -4.20 Total: 23.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.08 -8.17 -45.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206046964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.655 kcal (2) G-P(sol) polarization free energy of solvation -37.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds