Wall clock time and date at job start Fri Apr 10 2020 17:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.64461 * 2 1 4 4 C 1.54340 * 110.85399 * 236.83404 * 2 1 3 5 5 N 1.47025 * 107.26820 * 219.67582 * 4 2 1 6 6 C 1.36928 * 125.64594 * 178.84878 * 5 4 2 7 7 H 1.08005 * 120.00499 * 343.72989 * 6 5 4 8 8 C 1.38816 * 120.00066 * 163.73519 * 6 5 4 9 9 N 1.31613 * 120.00174 * 157.02119 * 8 6 5 10 10 Si 1.86805 * 119.99712 * 336.75111 * 8 6 5 11 11 H 1.48494 * 109.47317 * 89.99648 * 10 8 6 12 12 H 1.48500 * 109.47235 * 209.99997 * 10 8 6 13 13 H 1.48498 * 109.46746 * 329.99859 * 10 8 6 14 14 C 1.47429 * 108.70060 * 358.58663 * 5 4 2 15 15 C 1.54909 * 104.83245 * 24.35393 * 14 5 4 16 16 H 1.08998 * 111.00555 * 81.06799 * 15 14 5 17 17 N 1.46504 * 111.00203 * 204.87994 * 15 14 5 18 18 C 1.34777 * 119.99913 * 273.55180 * 17 15 14 19 19 O 1.21286 * 119.99839 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99919 * 180.02562 * 18 17 15 21 21 C 1.53007 * 109.46905 * 179.97438 * 20 18 17 22 22 N 1.46498 * 109.46638 * 179.97438 * 21 20 18 23 23 C 1.34434 * 126.82527 * 124.71046 * 22 21 20 24 24 N 1.30825 * 108.07723 * 179.88912 * 23 22 21 25 25 C 1.33239 * 109.83107 * 0.37901 * 24 23 22 26 26 N 1.30711 * 108.94709 * 359.76388 * 25 24 23 27 27 H 1.08993 * 109.47277 * 296.86023 * 1 2 3 28 28 H 1.09004 * 109.46376 * 56.85805 * 1 2 3 29 29 H 1.09000 * 109.47338 * 176.85488 * 1 2 3 30 30 H 1.08998 * 109.99170 * 100.19976 * 4 2 1 31 31 H 1.08997 * 109.77695 * 339.03012 * 4 2 1 32 32 H 0.96997 * 120.00468 * 4.36375 * 9 8 6 33 33 H 1.08995 * 110.36282 * 143.19775 * 14 5 4 34 34 H 1.09007 * 110.36360 * 265.40503 * 14 5 4 35 35 H 0.96997 * 120.00291 * 93.54758 * 17 15 14 36 36 H 1.09004 * 109.46781 * 299.99274 * 20 18 17 37 37 H 1.08995 * 109.47140 * 59.99458 * 20 18 17 38 38 H 1.09004 * 109.46955 * 299.99347 * 21 20 18 39 39 H 1.08990 * 109.47155 * 59.99584 * 21 20 18 40 40 H 1.08004 * 125.95779 * 0.03090 * 23 22 21 41 41 H 1.07998 * 125.52193 * 179.72606 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0794 -0.7890 -1.2073 5 7 3.2445 -1.5520 -0.7364 6 6 4.0043 -2.3995 -1.4977 7 1 3.6286 -2.7582 -2.4446 8 6 5.2574 -2.7976 -1.0524 9 7 5.7929 -3.9118 -1.5041 10 14 6.1868 -1.7480 0.1822 11 1 5.8352 -2.1763 1.5599 12 1 7.6475 -1.9115 -0.0295 13 1 5.8164 -0.3219 -0.0026 14 6 3.4632 -1.2487 0.6897 15 6 2.0789 -0.7935 1.2151 16 1 1.4450 -1.6511 1.4402 17 7 2.2213 0.0729 2.3879 18 6 2.3154 -0.4689 3.6184 19 8 2.2817 -1.6736 3.7548 20 6 2.4614 0.4223 4.8249 21 6 2.5458 -0.4382 6.0873 22 7 2.6883 0.4282 7.2600 23 6 1.9013 0.4450 8.3498 24 7 2.3613 1.3556 9.1688 25 6 3.4311 1.9442 8.6355 26 7 3.6707 1.4104 7.4666 27 1 -0.3633 0.4643 0.9167 28 1 -0.3632 0.5619 -0.8605 29 1 -0.3634 -1.0261 -0.0564 30 1 2.3815 -0.1003 -1.9963 31 1 1.3157 -1.4714 -1.5804 32 1 5.3413 -4.4219 -2.1945 33 1 3.7959 -2.1406 1.2205 34 1 4.1946 -0.4479 0.7994 35 1 2.2479 1.0363 2.2789 36 1 3.3695 1.0176 4.7292 37 1 1.5984 1.0845 4.8940 38 1 1.6374 -1.0331 6.1829 39 1 3.4085 -1.1007 6.0184 40 1 1.0409 -0.1851 8.5205 41 1 4.0065 2.7346 9.0943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206046964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:20 Heat of formation + Delta-G solvation = 51.708914 kcal Electronic energy + Delta-G solvation = -23339.629516 eV Core-core repulsion = 19870.156751 eV Total energy + Delta-G solvation = -3469.472765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.97702 -41.17107 -39.45225 -35.94897 -35.70014 -34.47032 -32.81134 -32.17233 -31.70033 -29.54300 -27.64460 -26.21680 -24.63540 -22.93133 -22.87546 -22.30528 -21.73480 -20.88821 -19.62347 -18.70888 -17.79733 -17.54624 -16.96217 -16.74094 -16.28951 -15.95109 -15.71430 -15.67510 -15.17475 -15.02750 -14.62421 -14.57400 -14.21859 -13.99720 -13.65065 -13.53054 -13.25961 -13.04819 -13.01093 -12.65524 -12.27175 -12.17697 -11.97477 -11.80701 -11.45296 -11.39945 -11.15889 -10.95409 -10.78206 -10.77324 -10.64019 -10.13467 -9.19894 -8.67608 -5.53105 0.70635 1.29556 1.32248 1.42184 1.52812 1.59548 2.03066 2.11468 2.45121 3.01787 3.33962 3.46323 3.48003 3.55892 3.65104 3.79466 3.87366 3.96737 4.13489 4.22126 4.26213 4.36729 4.44701 4.52729 4.68124 4.73237 4.78182 4.80912 4.94301 4.98539 5.04272 5.18798 5.29031 5.35291 5.49481 5.49933 5.55814 5.89496 6.06954 6.48480 6.76079 7.13899 7.18883 7.42475 8.05973 8.79587 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018670 B = 0.003730 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.383763 B = 7504.172652 C = 8510.579359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.107 0.893 4 C 0.130 3.870 5 N -0.628 5.628 6 C -0.317 4.317 7 H 0.047 0.953 8 C -0.074 4.074 9 N -0.956 5.956 10 Si 1.104 2.896 11 H -0.289 1.289 12 H -0.301 1.301 13 H -0.259 1.259 14 C 0.096 3.904 15 C 0.151 3.849 16 H 0.082 0.918 17 N -0.703 5.703 18 C 0.516 3.484 19 O -0.580 6.580 20 C -0.135 4.135 21 C 0.145 3.855 22 N -0.383 5.383 23 C 0.263 3.737 24 N -0.579 5.579 25 C 0.193 3.807 26 N -0.353 5.353 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.250 0.750 33 H 0.024 0.976 34 H 0.037 0.963 35 H 0.420 0.580 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.081 0.919 40 H 0.258 0.742 41 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.425 16.191 17.391 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 H 0.125 0.875 4 C 0.005 3.995 5 N -0.356 5.356 6 C -0.446 4.446 7 H 0.065 0.935 8 C -0.269 4.269 9 N -0.600 5.600 10 Si 0.930 3.070 11 H -0.217 1.217 12 H -0.229 1.229 13 H -0.185 1.185 14 C -0.030 4.030 15 C 0.044 3.956 16 H 0.100 0.900 17 N -0.355 5.355 18 C 0.303 3.697 19 O -0.459 6.459 20 C -0.175 4.175 21 C 0.023 3.977 22 N -0.173 5.173 23 C -0.033 4.033 24 N -0.306 5.306 25 C -0.109 4.109 26 N -0.181 5.181 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.258 0.742 36 H 0.128 0.872 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.099 0.901 40 H 0.274 0.726 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -11.618 15.613 18.077 26.562 hybrid contribution -0.936 -0.688 -1.751 2.101 sum -12.554 14.924 16.326 25.434 Atomic orbital electron populations 1.21706 0.91541 1.02110 1.03463 1.22398 0.97844 0.99319 0.91460 0.87465 1.21672 0.88500 0.93165 0.96179 1.44755 1.33495 1.51599 1.05765 1.19941 0.98397 1.22089 1.04152 0.93543 1.27063 0.95764 0.98689 1.05338 1.70999 1.45461 1.13161 1.30379 0.83335 0.74301 0.75587 0.73739 1.21651 1.22892 1.18460 1.22376 0.97719 0.97772 0.85163 1.21886 0.94742 0.93824 0.85115 0.89966 1.45743 1.73836 1.11029 1.04939 1.20928 0.74889 0.88695 0.85140 1.90767 1.51266 1.17159 1.86741 1.21760 1.07266 0.98498 0.90020 1.21589 1.05904 0.89839 0.80370 1.50638 1.21313 1.28414 1.16957 1.26926 0.97260 0.96405 0.82704 1.70588 1.14313 1.12938 1.32807 1.26568 0.94447 1.00044 0.89859 1.78014 1.13054 1.06104 1.20890 0.90318 0.90610 0.93551 0.94686 0.95284 0.94038 0.95756 0.94568 0.74198 0.87163 0.85264 0.84838 0.90103 0.72598 0.74463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.16 71.98 0.66 -1.82 16 2 C -0.09 -2.34 3.16 -9.60 -0.03 -2.37 16 3 H 0.11 2.21 7.99 -2.39 -0.02 2.19 16 4 C 0.13 4.85 6.85 86.73 0.59 5.44 16 5 N -0.63 -30.90 3.23 -691.94 -2.24 -33.14 16 6 C -0.32 -18.89 10.44 84.04 0.88 -18.02 16 7 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 8 C -0.07 -4.58 5.43 84.86 0.46 -4.12 16 9 N -0.96 -63.32 13.70 21.65 0.30 -63.03 16 10 Si 1.10 56.39 24.69 68.60 1.69 58.09 16 11 H -0.29 -14.49 6.70 99.48 0.67 -13.82 16 12 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 13 H -0.26 -11.86 6.25 99.48 0.62 -11.24 16 14 C 0.10 4.16 4.40 86.85 0.38 4.54 16 15 C 0.15 4.70 2.77 46.38 0.13 4.83 16 16 H 0.08 2.89 7.63 -2.39 -0.02 2.87 16 17 N -0.70 -15.55 5.23 -435.95 -2.28 -17.83 16 18 C 0.52 12.07 7.83 87.66 0.69 12.76 16 19 O -0.58 -19.22 15.73 -3.05 -0.05 -19.27 16 20 C -0.13 -1.97 5.91 29.85 0.18 -1.79 16 21 C 0.14 2.21 5.84 86.38 0.50 2.72 16 22 N -0.38 -6.31 3.69 -352.06 -1.30 -7.61 16 23 C 0.26 3.56 12.63 180.36 2.28 5.84 16 24 N -0.58 -10.63 11.19 -204.00 -2.28 -12.91 16 25 C 0.19 3.41 13.03 180.77 2.36 5.77 16 26 N -0.35 -7.23 12.57 -61.25 -0.77 -8.00 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.01 8.07 -2.39 -0.02 0.99 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.03 1.11 7.77 -2.39 -0.02 1.09 16 32 H 0.25 16.55 8.73 -92.71 -0.81 15.74 16 33 H 0.02 1.24 6.52 -2.39 -0.02 1.22 16 34 H 0.04 1.55 5.45 -2.38 -0.01 1.54 16 35 H 0.42 5.91 8.52 -92.71 -0.79 5.12 16 36 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.13 1.45 8.04 -2.38 -0.02 1.43 16 39 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 40 H 0.26 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.24 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -85.41 339.25 2.23 -83.18 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.09 Total: 6.75 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 9.07 Total: 13.77 kcal Atomic # 7 Polarization: -133.95 SS G_CDS: -8.57 Total: -142.52 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.05 Total: -19.27 kcal Atomic # 14 Polarization: 56.39 SS G_CDS: 1.69 Total: 58.09 kcal Total: -85.41 2.23 -83.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206046964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.893 kcal (2) G-P(sol) polarization free energy of solvation -85.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds