Wall clock time and date at job start Fri Apr 10 2020 17:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28512 * 124.44126 * 2 1 4 4 C 1.31143 * 109.05622 * 180.02562 * 3 2 1 5 5 C 1.40923 * 105.77417 * 359.97438 * 4 3 2 6 6 C 1.47802 * 127.23670 * 179.97438 * 5 4 3 7 7 O 1.21564 * 119.99880 * 6.03879 * 6 5 4 8 8 N 1.34771 * 120.00063 * 185.76193 * 6 5 4 9 9 C 1.46928 * 120.63215 * 354.87310 * 8 6 5 10 10 C 1.53625 * 108.54449 * 126.36903 * 9 8 6 11 11 C 1.53038 * 109.24140 * 54.85857 * 10 9 8 12 12 C 1.53004 * 109.44744 * 178.49810 * 11 10 9 13 13 N 1.46494 * 109.47051 * 295.05722 * 12 11 10 14 14 C 1.36935 * 120.00346 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99411 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00401 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99680 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00038 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46644 * 89.99848 * 18 16 14 20 20 H 1.48490 * 109.47062 * 210.00031 * 18 16 14 21 21 H 1.48497 * 109.47053 * 330.00196 * 18 16 14 22 22 C 1.53047 * 109.53587 * 298.50974 * 11 10 9 23 23 C 1.46930 * 120.63344 * 175.15376 * 8 6 5 24 24 N 1.28591 * 124.44014 * 180.32140 * 2 1 3 25 25 H 1.08998 * 109.47345 * 90.01851 * 1 2 3 26 26 H 1.09000 * 109.46696 * 210.02281 * 1 2 3 27 27 H 1.09001 * 109.46793 * 330.02092 * 1 2 3 28 28 H 1.08001 * 127.11190 * 179.97438 * 4 3 2 29 29 H 1.09007 * 109.58331 * 246.20382 * 9 8 6 30 30 H 1.08997 * 109.58602 * 6.62265 * 9 8 6 31 31 H 1.08994 * 109.63175 * 294.86517 * 10 9 8 32 32 H 1.08999 * 109.42814 * 174.72570 * 10 9 8 33 33 H 1.08993 * 109.46239 * 58.53115 * 11 10 9 34 34 H 1.09000 * 109.46697 * 55.05948 * 12 11 10 35 35 H 1.09000 * 109.46975 * 175.05974 * 12 11 10 36 36 H 0.97001 * 120.00403 * 0.02562 * 13 12 11 37 37 H 0.97008 * 119.99147 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.49398 * 301.41395 * 22 11 10 39 39 H 1.09001 * 109.49767 * 181.32204 * 22 11 10 40 40 H 1.09003 * 109.58023 * 353.36622 * 23 8 6 41 41 H 1.08988 * 109.59063 * 113.65216 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7119 -0.0006 5 6 3.4659 -0.6973 -0.0003 6 6 4.6487 -1.5836 -0.0013 7 8 5.7630 -1.1103 0.1084 8 7 4.4914 -2.9170 -0.1180 9 6 3.1490 -3.5141 -0.1326 10 6 3.0181 -4.3916 -1.3868 11 6 4.1593 -5.4110 -1.4104 12 6 4.0121 -6.3120 -2.6383 13 7 2.7855 -7.1039 -2.5187 14 6 2.4420 -7.9876 -3.5067 15 1 3.0757 -8.1011 -4.3739 16 6 1.2794 -8.7376 -3.3937 17 7 0.9496 -9.5874 -4.3431 18 14 0.1830 -8.5408 -1.8941 19 1 -0.8225 -7.4789 -2.1521 20 1 -0.5117 -9.8236 -1.6171 21 1 1.0117 -8.1632 -0.7211 22 6 5.5004 -4.6765 -1.4747 23 6 5.6593 -3.8019 -0.2271 24 7 2.1923 -1.0605 -0.0059 25 1 -0.3634 -0.0003 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 4.3131 1.3694 -0.0011 29 1 3.0110 -4.1246 0.7599 30 1 2.3981 -2.7244 -0.1573 31 1 3.0702 -3.7665 -2.2781 32 1 2.0626 -4.9155 -1.3645 33 1 4.1214 -6.0195 -0.5069 34 1 3.9613 -5.6965 -3.5364 35 1 4.8709 -6.9800 -2.7037 36 1 2.2161 -7.0017 -1.7400 37 1 0.1369 -10.1112 -4.2642 38 1 5.5290 -4.0487 -2.3653 39 1 6.3117 -5.4034 -1.5151 40 1 6.5652 -3.2021 -0.3144 41 1 5.7232 -4.4335 0.6588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206580643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:24 Heat of formation + Delta-G solvation = 102.109103 kcal Electronic energy + Delta-G solvation = -23694.347238 eV Core-core repulsion = 20227.059989 eV Total energy + Delta-G solvation = -3467.287248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.98041 -40.11660 -37.78664 -35.14924 -34.18725 -33.36997 -32.57912 -31.10147 -30.65277 -28.47649 -27.03780 -24.71932 -23.45411 -23.11312 -22.29800 -21.46386 -20.51099 -19.37944 -17.69544 -17.62730 -17.31438 -17.07001 -16.03620 -15.29366 -15.10247 -14.65524 -14.42281 -14.15327 -14.10095 -13.66030 -13.44631 -13.26705 -13.21221 -13.00574 -12.50596 -12.49460 -12.13872 -11.87285 -11.44550 -11.35963 -11.00082 -10.88339 -10.77934 -10.51018 -10.37933 -10.24812 -10.17483 -9.82503 -9.74847 -9.58453 -8.89776 -8.70061 -7.22379 -5.77205 -3.12168 1.00700 1.66559 1.80239 2.81406 3.06174 3.34685 3.36750 3.42926 3.59067 4.32238 4.57828 4.59356 4.65886 4.70680 4.87192 4.90006 4.92109 5.03360 5.15321 5.32384 5.33779 5.43340 5.50440 5.57556 5.66937 5.73450 5.85019 5.87192 5.94353 6.09438 6.13154 6.28891 6.39511 6.42396 6.59002 6.71893 6.82751 7.22208 7.76572 7.97858 8.00000 8.42144 9.21566 9.93872 10.14211 11.41502 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.004085 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.837950 B = 6851.862545 C = 8106.997868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.145 5.145 3 N -0.289 5.289 4 C 0.034 3.966 5 C -0.038 4.038 6 C 0.607 3.393 7 O -0.535 6.535 8 N -0.591 5.591 9 C 0.072 3.928 10 C -0.122 4.122 11 C -0.100 4.100 12 C 0.163 3.837 13 N -0.755 5.755 14 C -0.242 4.242 15 H 0.089 0.911 16 C 0.003 3.997 17 N -0.935 5.935 18 Si 0.883 3.117 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.125 4.125 23 C 0.113 3.887 24 N -0.247 5.247 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.208 0.792 29 H 0.067 0.933 30 H 0.132 0.868 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.026 0.974 35 H 0.027 0.973 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 20.571 11.861 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.047 5.047 3 N -0.129 5.129 4 C -0.149 4.149 5 C -0.201 4.201 6 C 0.392 3.608 7 O -0.411 6.411 8 N -0.323 5.323 9 C -0.051 4.051 10 C -0.160 4.160 11 C -0.119 4.119 12 C 0.036 3.964 13 N -0.401 5.401 14 C -0.372 4.372 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.584 5.584 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.164 4.164 23 C -0.008 4.008 24 N -0.095 5.095 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.225 0.775 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.450 20.698 11.702 23.821 hybrid contribution -0.174 -0.164 0.912 0.943 sum 1.276 20.534 12.614 24.133 Atomic orbital electron populations 1.22320 0.69601 1.06333 1.05674 1.48300 1.09378 0.99432 1.47558 1.74019 1.03846 1.15535 1.19464 1.24814 0.94300 0.93528 1.02269 1.23119 0.91190 0.94828 1.10927 1.16746 0.85935 0.81273 0.76879 1.90792 1.24145 1.75070 1.51062 1.47961 1.08760 1.05065 1.70509 1.22880 0.83915 0.99663 0.98630 1.21969 0.99731 0.97112 0.97220 1.21396 0.93994 0.96265 1.00240 1.20647 0.89597 0.91937 0.94264 1.42727 1.24909 1.48561 1.23919 1.19083 1.05524 1.13392 0.99232 0.89278 1.24672 0.98117 0.98762 0.97705 1.69710 1.26296 1.28736 1.33623 0.86553 0.81136 0.77211 0.83712 1.21101 1.21732 1.20324 1.21905 0.98125 0.98677 0.97663 1.21709 0.88369 0.92299 0.98467 1.74139 1.03151 1.14449 1.17780 0.88560 0.87395 0.87528 0.77487 0.91511 0.85167 0.91599 0.90270 0.91034 0.95595 0.95520 0.80707 0.93097 0.91337 0.90253 0.88926 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.55 59.85 0.69 1.17 16 2 N -0.14 -1.40 4.35 -16.63 -0.07 -1.47 16 3 N -0.29 -3.06 12.01 30.90 0.37 -2.69 16 4 C 0.03 0.37 12.05 -16.83 -0.20 0.16 16 5 C -0.04 -0.47 6.95 -82.68 -0.57 -1.05 16 6 C 0.61 8.30 7.70 -12.35 -0.10 8.21 16 7 O -0.54 -8.35 16.39 5.31 0.09 -8.26 16 8 N -0.59 -7.56 2.97 -173.63 -0.51 -8.08 16 9 C 0.07 0.90 6.36 -3.48 -0.02 0.87 16 10 C -0.12 -1.74 5.26 -26.39 -0.14 -1.88 16 11 C -0.10 -1.48 2.19 -90.57 -0.20 -1.67 16 12 C 0.16 3.10 5.65 -4.04 -0.02 3.07 16 13 N -0.76 -17.75 5.12 -59.91 -0.31 -18.06 16 14 C -0.24 -6.88 10.47 -15.06 -0.16 -7.03 16 15 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 16 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 17 N -0.94 -29.42 13.97 55.49 0.78 -28.65 16 18 Si 0.88 21.82 27.74 -169.99 -4.71 17.10 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 22 C -0.13 -1.54 5.36 -26.61 -0.14 -1.68 16 23 C 0.11 1.33 6.42 -3.71 -0.02 1.31 16 24 N -0.25 -2.83 8.50 33.42 0.28 -2.54 16 25 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.21 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.13 1.58 3.73 -109.25 -0.41 1.17 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.23 7.15 -51.93 -0.37 0.86 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.36 8.17 4.70 -40.82 -0.19 7.98 16 37 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.10 7.04 -51.93 -0.37 0.74 16 41 H 0.07 0.75 8.14 -51.94 -0.42 0.33 16 LS Contribution 333.84 15.07 5.03 5.03 Total: -1.00 -35.05 333.84 -6.04 -41.10 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.00 Total: 5.05 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.98 Total: 1.47 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.54 Total: -61.49 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.05 -6.04 -41.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206580643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.207 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds