Wall clock time and date at job start Fri Apr 10 2020 17:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28512 * 124.44126 * 2 1 4 4 C 1.31143 * 109.05622 * 180.02562 * 3 2 1 5 5 C 1.40923 * 105.77417 * 359.97438 * 4 3 2 6 6 C 1.47802 * 127.23670 * 179.97438 * 5 4 3 7 7 O 1.21564 * 119.99880 * 6.03879 * 6 5 4 8 8 N 1.34771 * 120.00063 * 185.76193 * 6 5 4 9 9 C 1.46928 * 120.63215 * 354.87310 * 8 6 5 10 10 C 1.53625 * 108.54449 * 126.36903 * 9 8 6 11 11 C 1.53038 * 109.24140 * 54.85857 * 10 9 8 12 12 C 1.53004 * 109.44744 * 178.49810 * 11 10 9 13 13 N 1.46494 * 109.47051 * 295.05722 * 12 11 10 14 14 C 1.36935 * 120.00346 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99411 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00401 * 180.02562 * 14 13 12 17 17 N 1.31622 * 119.99680 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00038 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46644 * 89.99848 * 18 16 14 20 20 H 1.48490 * 109.47062 * 210.00031 * 18 16 14 21 21 H 1.48497 * 109.47053 * 330.00196 * 18 16 14 22 22 C 1.53047 * 109.53587 * 298.50974 * 11 10 9 23 23 C 1.46930 * 120.63344 * 175.15376 * 8 6 5 24 24 N 1.28591 * 124.44014 * 180.32140 * 2 1 3 25 25 H 1.08998 * 109.47345 * 90.01851 * 1 2 3 26 26 H 1.09000 * 109.46696 * 210.02281 * 1 2 3 27 27 H 1.09001 * 109.46793 * 330.02092 * 1 2 3 28 28 H 1.08001 * 127.11190 * 179.97438 * 4 3 2 29 29 H 1.09007 * 109.58331 * 246.20382 * 9 8 6 30 30 H 1.08997 * 109.58602 * 6.62265 * 9 8 6 31 31 H 1.08994 * 109.63175 * 294.86517 * 10 9 8 32 32 H 1.08999 * 109.42814 * 174.72570 * 10 9 8 33 33 H 1.08993 * 109.46239 * 58.53115 * 11 10 9 34 34 H 1.09000 * 109.46697 * 55.05948 * 12 11 10 35 35 H 1.09000 * 109.46975 * 175.05974 * 12 11 10 36 36 H 0.97001 * 120.00403 * 0.02562 * 13 12 11 37 37 H 0.97008 * 119.99147 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.49398 * 301.41395 * 22 11 10 39 39 H 1.09001 * 109.49767 * 181.32204 * 22 11 10 40 40 H 1.09003 * 109.58023 * 353.36622 * 23 8 6 41 41 H 1.08988 * 109.59063 * 113.65216 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7119 -0.0006 5 6 3.4659 -0.6973 -0.0003 6 6 4.6487 -1.5836 -0.0013 7 8 5.7630 -1.1103 0.1084 8 7 4.4914 -2.9170 -0.1180 9 6 3.1490 -3.5141 -0.1326 10 6 3.0181 -4.3916 -1.3868 11 6 4.1593 -5.4110 -1.4104 12 6 4.0121 -6.3120 -2.6383 13 7 2.7855 -7.1039 -2.5187 14 6 2.4420 -7.9876 -3.5067 15 1 3.0757 -8.1011 -4.3739 16 6 1.2794 -8.7376 -3.3937 17 7 0.9496 -9.5874 -4.3431 18 14 0.1830 -8.5408 -1.8941 19 1 -0.8225 -7.4789 -2.1521 20 1 -0.5117 -9.8236 -1.6171 21 1 1.0117 -8.1632 -0.7211 22 6 5.5004 -4.6765 -1.4747 23 6 5.6593 -3.8019 -0.2271 24 7 2.1923 -1.0605 -0.0059 25 1 -0.3634 -0.0003 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 4.3131 1.3694 -0.0011 29 1 3.0110 -4.1246 0.7599 30 1 2.3981 -2.7244 -0.1573 31 1 3.0702 -3.7665 -2.2781 32 1 2.0626 -4.9155 -1.3645 33 1 4.1214 -6.0195 -0.5069 34 1 3.9613 -5.6965 -3.5364 35 1 4.8709 -6.9800 -2.7037 36 1 2.2161 -7.0017 -1.7400 37 1 0.1369 -10.1112 -4.2642 38 1 5.5290 -4.0487 -2.3653 39 1 6.3117 -5.4034 -1.5151 40 1 6.5652 -3.2021 -0.3144 41 1 5.7232 -4.4335 0.6588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206580643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:23 Heat of formation + Delta-G solvation = 77.000971 kcal Electronic energy + Delta-G solvation = -23695.436008 eV Core-core repulsion = 20227.059989 eV Total energy + Delta-G solvation = -3468.376019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.76308 -41.14572 -38.97202 -36.72063 -34.97739 -34.54496 -33.83537 -32.66170 -31.93340 -29.24418 -28.34044 -25.92057 -24.63586 -24.40147 -23.13507 -22.85331 -21.70046 -20.46762 -19.60308 -18.44150 -18.09079 -18.05417 -17.03574 -16.62135 -16.27611 -15.93767 -15.79149 -15.48739 -15.25101 -14.89858 -14.59961 -14.33902 -14.13892 -13.86997 -13.72830 -13.63855 -13.29435 -13.11595 -13.00142 -12.77748 -12.40431 -12.19000 -11.94318 -11.87579 -11.69619 -11.59896 -11.42661 -11.39221 -11.02050 -10.83928 -10.51012 -9.71467 -9.28544 -8.02144 -5.35791 0.13899 0.85817 1.18977 1.37889 1.42641 1.50289 1.89631 2.09656 2.49618 2.79515 3.29219 3.49909 3.57098 3.82102 3.86613 3.93092 4.08723 4.16994 4.28185 4.30737 4.36382 4.46147 4.46975 4.56044 4.66032 4.71818 4.78801 4.84732 4.91242 4.98524 5.06835 5.08598 5.13092 5.23790 5.48129 5.50109 5.75451 5.76198 6.21690 6.22853 6.86907 7.07656 7.08933 7.84737 8.05523 9.19724 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017207 B = 0.004085 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.837950 B = 6851.862545 C = 8106.997868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.136 5.136 3 N -0.295 5.295 4 C 0.030 3.970 5 C -0.062 4.062 6 C 0.605 3.395 7 O -0.561 6.561 8 N -0.592 5.592 9 C 0.080 3.920 10 C -0.118 4.118 11 C -0.089 4.089 12 C 0.160 3.840 13 N -0.755 5.755 14 C -0.238 4.238 15 H 0.052 0.948 16 C -0.066 4.066 17 N -0.986 5.986 18 Si 0.957 3.043 19 H -0.274 1.274 20 H -0.296 1.296 21 H -0.248 1.248 22 C -0.117 4.117 23 C 0.115 3.885 24 N -0.253 5.253 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.225 0.775 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.016 0.984 35 H 0.024 0.976 36 H 0.367 0.633 37 H 0.258 0.742 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 21.958 14.201 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.040 5.040 3 N -0.136 5.136 4 C -0.152 4.152 5 C -0.223 4.223 6 C 0.391 3.609 7 O -0.439 6.439 8 N -0.324 5.324 9 C -0.043 4.043 10 C -0.156 4.156 11 C -0.108 4.108 12 C 0.034 3.966 13 N -0.401 5.401 14 C -0.369 4.369 15 H 0.070 0.930 16 C -0.257 4.257 17 N -0.637 5.637 18 Si 0.783 3.217 19 H -0.200 1.200 20 H -0.223 1.223 21 H -0.172 1.172 22 C -0.155 4.155 23 C -0.007 4.007 24 N -0.102 5.102 25 H 0.128 0.872 26 H 0.141 0.859 27 H 0.146 0.854 28 H 0.241 0.759 29 H 0.098 0.902 30 H 0.153 0.847 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.201 0.799 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.737 22.118 14.061 26.220 hybrid contribution 0.054 -0.568 0.074 0.575 sum 0.791 21.550 14.135 25.784 Atomic orbital electron populations 1.22818 0.67059 1.08220 1.07137 1.48818 1.10711 0.98779 1.45683 1.74032 1.03872 1.15856 1.19827 1.25142 0.94994 0.93317 1.01718 1.22998 0.91193 0.95261 1.12836 1.16918 0.86035 0.81547 0.76357 1.90769 1.25187 1.75514 1.52386 1.48041 1.09152 1.05044 1.70115 1.22845 0.83951 0.99576 0.97955 1.21897 0.98898 0.96947 0.97883 1.21296 0.95637 0.95819 0.98082 1.20798 0.87631 0.91939 0.96232 1.42688 1.26395 1.48070 1.22958 1.19050 1.04840 1.13856 0.99129 0.93031 1.25563 1.00017 0.98661 1.01436 1.69908 1.27101 1.30310 1.36372 0.85382 0.79053 0.77047 0.80211 1.19955 1.22325 1.17195 1.21833 0.97119 0.98731 0.97850 1.21754 0.88101 0.92158 0.98641 1.74021 1.03004 1.15230 1.17944 0.87245 0.85863 0.85425 0.75888 0.90182 0.84673 0.92708 0.91260 0.90230 0.96547 0.95759 0.79874 0.93327 0.92099 0.88808 0.88992 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 11.55 127.77 1.48 2.05 16 2 N -0.14 -2.34 4.35 -206.52 -0.90 -3.24 16 3 N -0.30 -5.72 12.01 -56.16 -0.67 -6.40 16 4 C 0.03 0.62 12.05 85.45 1.03 1.64 16 5 C -0.06 -1.45 6.95 42.24 0.29 -1.16 16 6 C 0.61 15.84 7.70 86.77 0.67 16.51 16 7 O -0.56 -17.04 16.39 -3.92 -0.06 -17.11 16 8 N -0.59 -14.05 2.97 -821.52 -2.44 -16.49 16 9 C 0.08 1.79 6.36 86.51 0.55 2.34 16 10 C -0.12 -3.14 5.26 30.82 0.16 -2.98 16 11 C -0.09 -2.46 2.19 -10.76 -0.02 -2.49 16 12 C 0.16 5.98 5.65 86.38 0.49 6.47 16 13 N -0.75 -34.79 5.12 -343.46 -1.76 -36.55 16 14 C -0.24 -13.66 10.47 84.03 0.88 -12.78 16 15 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 16 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 17 N -0.99 -63.42 13.97 21.65 0.30 -63.11 16 18 Si 0.96 44.38 27.74 68.60 1.90 46.28 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 21 H -0.25 -10.18 6.52 99.48 0.65 -9.53 16 22 C -0.12 -2.66 5.36 30.67 0.16 -2.49 16 23 C 0.12 2.45 6.42 86.36 0.55 3.01 16 24 N -0.25 -5.30 8.50 -48.17 -0.41 -5.71 16 25 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.22 3.44 8.06 -2.91 -0.02 3.41 16 29 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.14 2.98 3.73 -76.54 -0.29 2.70 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.99 7.15 -2.39 -0.02 1.98 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.37 15.81 4.70 -92.71 -0.44 15.37 16 37 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 38 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.09 2.03 7.04 -2.39 -0.02 2.01 16 41 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -76.21 333.84 2.95 -73.26 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.28 Total: 22.34 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.71 Total: 6.72 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -5.87 Total: -131.50 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.06 Total: -17.11 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal Total: -76.21 2.95 -73.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206580643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.257 kcal (2) G-P(sol) polarization free energy of solvation -76.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds