Wall clock time and date at job start Fri Apr 10 2020 17:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00076 * 2 1 4 4 H 1.48496 * 109.47206 * 239.99792 * 3 2 1 5 5 H 1.48504 * 109.47298 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47166 * 119.99928 * 3 2 1 7 7 C 1.37879 * 119.99503 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.85379 * 0.02562 * 7 2 1 9 9 C 1.53227 * 108.53463 * 231.34809 * 8 7 2 10 10 C 1.52961 * 109.40644 * 305.37461 * 9 8 7 11 11 H 1.09003 * 109.35171 * 303.52715 * 10 9 8 12 12 N 1.46496 * 109.41425 * 183.71088 * 10 9 8 13 13 C 1.34771 * 120.00814 * 84.64158 * 12 10 9 14 14 O 1.21283 * 119.99595 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00489 * 180.02562 * 13 12 10 16 16 H 1.08996 * 110.69107 * 332.83494 * 15 13 12 17 17 C 1.55167 * 110.77855 * 209.54583 * 15 13 12 18 18 N 1.48638 * 103.37815 * 205.15217 * 17 15 13 19 19 C 1.48194 * 105.87450 * 38.62998 * 18 17 15 20 20 C 1.53018 * 106.62072 * 334.86823 * 19 18 17 21 21 C 1.52881 * 115.88574 * 131.23812 * 20 19 18 22 22 N 1.48159 * 85.83546 * 94.52629 * 21 20 19 23 23 C 1.48167 * 90.96449 * 23.90547 * 22 21 20 24 24 C 1.52955 * 109.81934 * 63.59623 * 10 9 8 25 25 C 1.51303 * 120.83780 * 180.02562 * 7 2 1 26 26 H 0.97001 * 120.00103 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.62531 * 111.63188 * 8 7 2 28 28 H 1.08994 * 109.62200 * 351.06157 * 8 7 2 29 29 H 1.09001 * 109.48120 * 185.39034 * 9 8 7 30 30 H 1.09004 * 109.48360 * 65.35150 * 9 8 7 31 31 H 0.97001 * 119.99545 * 264.64363 * 12 10 9 32 32 H 1.09002 * 110.63923 * 323.62510 * 17 15 13 33 33 H 1.09002 * 110.64319 * 86.67896 * 17 15 13 34 34 H 1.00903 * 110.99762 * 159.17385 * 18 17 15 35 35 H 1.08994 * 110.02969 * 94.15938 * 19 18 17 36 36 H 1.09006 * 110.02317 * 215.53502 * 19 18 17 37 37 H 1.09004 * 113.80961 * 208.75424 * 21 20 19 38 38 H 1.08994 * 113.81754 * 340.29132 * 21 20 19 39 39 H 1.00901 * 110.99748 * 270.92742 * 22 21 20 40 40 H 1.09001 * 113.81630 * 221.86667 * 23 22 21 41 41 H 1.08994 * 113.81329 * 90.31944 * 23 22 21 42 42 H 1.09000 * 109.47973 * 56.38562 * 24 10 9 43 43 H 1.08998 * 109.47994 * 176.41326 * 24 10 9 44 44 H 1.09006 * 109.64570 * 8.94475 * 25 7 2 45 45 H 1.08998 * 109.62543 * 248.36066 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 6 1.2676 -2.5152 -0.0017 9 6 1.8224 -3.3833 1.1325 10 6 3.3395 -3.5076 0.9819 11 1 3.5728 -3.9118 -0.0032 12 7 3.8590 -4.4090 2.0134 13 6 3.8519 -5.7412 1.8100 14 8 3.4158 -6.1940 0.7728 15 6 4.3858 -6.6684 2.8714 16 1 5.1375 -6.1653 3.4796 17 6 4.9667 -7.9583 2.2339 18 7 4.8545 -8.9616 3.3248 19 6 3.5637 -8.6855 3.9983 20 6 3.2449 -7.2104 3.7457 21 6 1.8320 -6.9089 3.2457 22 7 1.4938 -6.6781 4.6696 23 6 2.9104 -6.3777 4.9833 24 6 3.9902 -2.1318 1.1342 25 6 3.5173 -1.2164 0.0000 26 1 -0.4850 0.8400 -0.0004 27 1 1.4202 -3.0186 -0.9563 28 1 0.2036 -2.3409 0.1575 29 1 1.3701 -4.3740 1.0865 30 1 1.5890 -2.9211 2.0917 31 1 4.2081 -4.0468 2.8428 32 1 4.3737 -8.2611 1.3709 33 1 6.0096 -7.8118 1.9525 34 1 4.8764 -9.9006 2.9561 35 1 2.7801 -9.3144 3.5758 36 1 3.6541 -8.8706 5.0687 37 1 1.7657 -6.0140 2.6269 38 1 1.3272 -7.7698 2.8074 39 1 1.1986 -7.5342 5.1145 40 1 3.2574 -6.8191 5.9176 41 1 3.1684 -5.3231 4.8871 42 1 3.7055 -1.6992 2.0933 43 1 5.0743 -2.2355 1.0896 44 1 3.8986 -0.2079 0.1605 45 1 3.8782 -1.5997 -0.9544 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220094912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:38 Heat of formation + Delta-G solvation = -7.820245 kcal Electronic energy + Delta-G solvation = -24923.207364 eV Core-core repulsion = 21554.693565 eV Total energy + Delta-G solvation = -3368.513799 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37096 -38.97736 -36.90496 -36.20097 -33.71113 -31.74711 -30.40462 -29.61761 -28.34406 -27.20029 -26.34618 -23.76269 -23.13026 -21.75123 -21.41782 -20.10081 -19.63311 -18.67883 -17.28993 -16.54606 -16.42312 -16.05832 -15.45994 -15.22628 -14.67585 -14.43961 -13.98317 -13.87925 -13.31627 -13.18713 -12.94662 -12.78674 -12.72530 -12.35509 -12.14070 -12.05914 -11.97946 -11.84736 -11.55981 -11.02915 -10.94049 -10.79997 -10.74886 -10.72094 -10.34346 -9.93018 -9.70784 -9.55474 -9.07744 -8.91385 -8.82238 -8.63685 -8.47358 -8.30672 -6.09598 -4.01180 2.80399 3.27134 3.34614 3.35033 3.37488 3.73778 4.00757 4.05957 4.18000 4.37636 4.58593 4.91358 4.97487 5.06887 5.17525 5.20169 5.29366 5.40491 5.46547 5.48882 5.59659 5.65368 5.69233 5.71936 5.82097 5.86596 5.99247 6.14946 6.34097 6.46615 6.50786 6.68290 6.75062 6.80714 6.93567 6.95934 7.09127 7.13733 7.22606 7.37081 7.63364 7.75931 7.84549 7.89578 8.39101 8.51596 8.97063 9.54048 11.00044 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.003990 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.126968 B = 7016.405718 C = 7374.593315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.890 3.110 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.491 4.491 8 C 0.012 3.988 9 C -0.111 4.111 10 C 0.154 3.846 11 H 0.077 0.923 12 N -0.720 5.720 13 C 0.521 3.479 14 O -0.541 6.541 15 C -0.105 4.105 16 H 0.100 0.900 17 C 0.053 3.947 18 N -0.670 5.670 19 C 0.061 3.939 20 C -0.126 4.126 21 C 0.031 3.969 22 N -0.654 5.654 23 C 0.035 3.965 24 C -0.113 4.113 25 C -0.007 4.007 26 H 0.265 0.735 27 H 0.005 0.995 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.393 0.607 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.341 0.659 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.333 0.667 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.037 0.963 44 H 0.028 0.972 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.908 -14.855 9.856 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.510 4.510 8 C -0.026 4.026 9 C -0.150 4.150 10 C 0.051 3.949 11 H 0.096 0.904 12 N -0.369 5.369 13 C 0.305 3.695 14 O -0.419 6.419 15 C -0.128 4.128 16 H 0.119 0.881 17 C -0.076 4.076 18 N -0.299 5.299 19 C -0.068 4.068 20 C -0.128 4.128 21 C -0.099 4.099 22 N -0.280 5.280 23 C -0.095 4.095 24 C -0.152 4.152 25 C -0.045 4.045 26 H 0.075 0.925 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.226 0.774 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.156 0.844 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.147 0.853 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 8.405 -13.985 9.636 18.950 hybrid contribution 0.541 -0.100 -0.226 0.595 sum 8.946 -14.085 9.410 19.157 Atomic orbital electron populations 1.69829 1.06158 1.27042 1.49521 1.24845 0.94723 0.98496 0.94544 0.86667 0.79409 0.83116 0.78908 1.20028 1.21843 1.20028 1.20027 0.89139 0.91623 1.50176 1.19336 0.98672 0.92618 0.91925 1.21945 0.93114 0.98367 1.01604 1.21065 0.94968 0.88543 0.90309 0.90445 1.46461 1.63124 1.06030 1.21284 1.20089 0.78701 0.83044 0.87620 1.90702 1.46980 1.76288 1.27929 1.22111 0.98244 0.96156 0.96266 0.88134 1.22969 1.01420 0.90003 0.93225 1.63172 1.32461 1.06969 1.27264 1.22398 0.91024 0.93077 1.00320 1.23754 0.95830 0.96192 0.97042 1.23808 0.91347 1.02662 0.92087 1.65150 1.21670 1.36891 1.04330 1.23610 0.89299 1.00637 0.95933 1.21856 0.96790 0.94881 1.01661 1.19580 0.96934 0.94423 0.93580 0.92504 0.97694 0.92331 0.94850 0.93155 0.77413 0.91840 0.89669 0.84386 0.93393 0.89881 0.87237 0.90888 0.85266 0.90432 0.88180 0.92479 0.94412 0.95401 0.96143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 12.73 55.43 0.71 -24.92 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.89 21.03 26.80 -169.99 -4.56 16.48 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.49 -12.83 5.51 -98.91 -0.55 -13.38 16 8 C 0.01 0.32 5.97 -27.49 -0.16 0.15 16 9 C -0.11 -2.42 5.50 -26.63 -0.15 -2.57 16 10 C 0.15 2.94 2.35 -67.98 -0.16 2.78 16 11 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 12 N -0.72 -10.89 5.07 -53.85 -0.27 -11.17 16 13 C 0.52 7.86 4.78 -10.99 -0.05 7.81 16 14 O -0.54 -10.25 15.25 5.56 0.08 -10.17 16 15 C -0.10 -1.19 3.10 -90.31 -0.28 -1.47 16 16 H 0.10 1.00 8.12 -51.93 -0.42 0.58 16 17 C 0.05 0.58 6.91 -1.71 -0.01 0.57 16 18 N -0.67 -6.14 7.53 -110.20 -0.83 -6.97 16 19 C 0.06 0.54 7.03 -3.10 -0.02 0.51 16 20 C -0.13 -1.30 1.10 -154.44 -0.17 -1.47 16 21 C 0.03 0.39 7.53 -3.19 -0.02 0.37 16 22 N -0.65 -7.42 8.55 -121.78 -1.04 -8.46 16 23 C 0.04 0.34 8.17 -3.19 -0.03 0.32 16 24 C -0.11 -2.17 5.40 -26.64 -0.14 -2.31 16 25 C -0.01 -0.16 5.59 -27.47 -0.15 -0.31 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 29 H 0.03 0.72 7.71 -51.93 -0.40 0.32 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.39 4.89 8.60 -40.82 -0.35 4.53 16 32 H 0.06 0.80 7.24 -51.93 -0.38 0.42 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.34 2.57 8.92 -39.29 -0.35 2.22 16 35 H 0.05 0.40 7.75 -51.93 -0.40 0.00 16 36 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 37 H 0.11 1.76 5.82 -51.93 -0.30 1.46 16 38 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 39 H 0.33 3.05 8.85 -39.29 -0.35 2.70 16 40 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.03 0.62 5.17 -51.93 -0.27 0.35 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -30.11 343.28 -10.03 -40.14 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.29 Total: 6.92 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.00 Total: -7.02 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -1.44 Total: -51.52 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.56 Total: 16.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.11 -10.03 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.319 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds