Wall clock time and date at job start Fri Apr 10 2020 17:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00076 * 2 1 4 4 H 1.48496 * 109.47206 * 239.99792 * 3 2 1 5 5 H 1.48504 * 109.47298 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47166 * 119.99928 * 3 2 1 7 7 C 1.37879 * 119.99503 * 180.02562 * 2 1 3 8 8 C 1.51266 * 120.85379 * 0.02562 * 7 2 1 9 9 C 1.53227 * 108.53463 * 231.34809 * 8 7 2 10 10 C 1.52961 * 109.40644 * 305.37461 * 9 8 7 11 11 H 1.09003 * 109.35171 * 303.52715 * 10 9 8 12 12 N 1.46496 * 109.41425 * 183.71088 * 10 9 8 13 13 C 1.34771 * 120.00814 * 84.64158 * 12 10 9 14 14 O 1.21283 * 119.99595 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00489 * 180.02562 * 13 12 10 16 16 H 1.08996 * 110.69107 * 332.83494 * 15 13 12 17 17 C 1.55167 * 110.77855 * 209.54583 * 15 13 12 18 18 N 1.48638 * 103.37815 * 205.15217 * 17 15 13 19 19 C 1.48194 * 105.87450 * 38.62998 * 18 17 15 20 20 C 1.53018 * 106.62072 * 334.86823 * 19 18 17 21 21 C 1.52881 * 115.88574 * 131.23812 * 20 19 18 22 22 N 1.48159 * 85.83546 * 94.52629 * 21 20 19 23 23 C 1.48167 * 90.96449 * 23.90547 * 22 21 20 24 24 C 1.52955 * 109.81934 * 63.59623 * 10 9 8 25 25 C 1.51303 * 120.83780 * 180.02562 * 7 2 1 26 26 H 0.97001 * 120.00103 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.62531 * 111.63188 * 8 7 2 28 28 H 1.08994 * 109.62200 * 351.06157 * 8 7 2 29 29 H 1.09001 * 109.48120 * 185.39034 * 9 8 7 30 30 H 1.09004 * 109.48360 * 65.35150 * 9 8 7 31 31 H 0.97001 * 119.99545 * 264.64363 * 12 10 9 32 32 H 1.09002 * 110.63923 * 323.62510 * 17 15 13 33 33 H 1.09002 * 110.64319 * 86.67896 * 17 15 13 34 34 H 1.00903 * 110.99762 * 159.17385 * 18 17 15 35 35 H 1.08994 * 110.02969 * 94.15938 * 19 18 17 36 36 H 1.09006 * 110.02317 * 215.53502 * 19 18 17 37 37 H 1.09004 * 113.80961 * 208.75424 * 21 20 19 38 38 H 1.08994 * 113.81754 * 340.29132 * 21 20 19 39 39 H 1.00901 * 110.99748 * 270.92742 * 22 21 20 40 40 H 1.09001 * 113.81630 * 221.86667 * 23 22 21 41 41 H 1.08994 * 113.81329 * 90.31944 * 23 22 21 42 42 H 1.09000 * 109.47973 * 56.38562 * 24 10 9 43 43 H 1.08998 * 109.47994 * 176.41326 * 24 10 9 44 44 H 1.09006 * 109.64570 * 8.94475 * 25 7 2 45 45 H 1.08998 * 109.62543 * 248.36066 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 6 1.2676 -2.5152 -0.0017 9 6 1.8224 -3.3833 1.1325 10 6 3.3395 -3.5076 0.9819 11 1 3.5728 -3.9118 -0.0032 12 7 3.8590 -4.4090 2.0134 13 6 3.8519 -5.7412 1.8100 14 8 3.4158 -6.1940 0.7728 15 6 4.3858 -6.6684 2.8714 16 1 5.1375 -6.1653 3.4796 17 6 4.9667 -7.9583 2.2339 18 7 4.8545 -8.9616 3.3248 19 6 3.5637 -8.6855 3.9983 20 6 3.2449 -7.2104 3.7457 21 6 1.8320 -6.9089 3.2457 22 7 1.4938 -6.6781 4.6696 23 6 2.9104 -6.3777 4.9833 24 6 3.9902 -2.1318 1.1342 25 6 3.5173 -1.2164 0.0000 26 1 -0.4850 0.8400 -0.0004 27 1 1.4202 -3.0186 -0.9563 28 1 0.2036 -2.3409 0.1575 29 1 1.3701 -4.3740 1.0865 30 1 1.5890 -2.9211 2.0917 31 1 4.2081 -4.0468 2.8428 32 1 4.3737 -8.2611 1.3709 33 1 6.0096 -7.8118 1.9525 34 1 4.8764 -9.9006 2.9561 35 1 2.7801 -9.3144 3.5758 36 1 3.6541 -8.8706 5.0687 37 1 1.7657 -6.0140 2.6269 38 1 1.3272 -7.7698 2.8074 39 1 1.1986 -7.5342 5.1145 40 1 3.2574 -6.8191 5.9176 41 1 3.1684 -5.3231 4.8871 42 1 3.7055 -1.6992 2.0933 43 1 5.0743 -2.2355 1.0896 44 1 3.8986 -0.2079 0.1605 45 1 3.8782 -1.5997 -0.9544 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220094912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:37 Heat of formation + Delta-G solvation = -33.519291 kcal Electronic energy + Delta-G solvation = -24924.321758 eV Core-core repulsion = 21554.693565 eV Total energy + Delta-G solvation = -3369.628194 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33032 -40.25016 -38.43454 -37.14325 -35.36992 -33.49372 -31.60096 -31.34595 -29.14590 -28.92012 -27.22201 -24.74926 -24.39575 -23.54372 -22.88613 -21.38148 -21.14927 -19.74668 -18.43537 -17.86632 -17.55925 -17.28277 -16.68827 -16.45253 -16.28778 -15.76582 -15.09172 -14.89226 -14.81464 -14.69182 -14.27409 -14.11314 -13.94428 -13.77479 -13.58597 -13.39743 -13.18520 -12.79774 -12.75247 -12.67997 -12.65559 -12.52970 -12.08150 -11.83929 -11.75203 -11.62635 -11.49182 -11.09759 -10.76260 -10.65144 -10.52007 -9.90958 -9.67071 -9.46404 -8.16870 -6.12899 1.41277 1.42833 1.51164 1.60947 2.17653 2.41154 2.89370 3.08683 3.15395 3.23094 3.40141 3.71115 3.91742 4.04494 4.10104 4.18541 4.22172 4.39697 4.48040 4.51240 4.59102 4.64227 4.67871 4.70801 4.80752 4.83841 4.86903 4.87510 4.96647 4.97158 5.01284 5.07763 5.15728 5.19850 5.22167 5.54143 5.56047 5.57467 5.68170 5.74706 5.80008 6.27663 6.32388 6.38703 6.64535 6.92903 7.31300 7.45468 8.94710 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.003990 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.126968 B = 7016.405718 C = 7374.593315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.020 3.980 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.256 1.256 7 C -0.502 4.502 8 C 0.009 3.991 9 C -0.095 4.095 10 C 0.168 3.832 11 H 0.055 0.945 12 N -0.710 5.710 13 C 0.522 3.478 14 O -0.584 6.584 15 C -0.099 4.099 16 H 0.126 0.874 17 C 0.055 3.945 18 N -0.664 5.664 19 C 0.064 3.936 20 C -0.114 4.114 21 C 0.022 3.978 22 N -0.668 5.668 23 C 0.040 3.960 24 C -0.104 4.104 25 C -0.012 4.012 26 H 0.263 0.737 27 H -0.011 1.011 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.044 0.956 31 H 0.411 0.589 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.351 0.649 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.347 0.653 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.037 0.963 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.933 -15.451 12.252 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.181 1.181 7 C -0.521 4.521 8 C -0.029 4.029 9 C -0.134 4.134 10 C 0.063 3.937 11 H 0.073 0.927 12 N -0.360 5.360 13 C 0.309 3.691 14 O -0.464 6.464 15 C -0.122 4.122 16 H 0.144 0.856 17 C -0.074 4.074 18 N -0.293 5.293 19 C -0.066 4.066 20 C -0.117 4.117 21 C -0.108 4.108 22 N -0.296 5.296 23 C -0.089 4.089 24 C -0.143 4.143 25 C -0.050 4.050 26 H 0.072 0.928 27 H 0.007 0.993 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.247 0.753 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.168 0.832 35 H 0.069 0.931 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.163 0.837 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 11.467 -14.607 12.072 22.149 hybrid contribution -0.498 -0.015 -1.020 1.136 sum 10.969 -14.622 11.052 21.360 Atomic orbital electron populations 1.69996 1.07975 1.27641 1.51774 1.25703 0.95375 1.02108 0.94641 0.85705 0.78269 0.78715 0.79781 1.19144 1.22345 1.18096 1.20611 0.91419 0.91363 1.48679 1.19279 0.97008 0.93918 0.92652 1.21696 0.95494 0.96780 0.99455 1.20594 0.92824 0.89676 0.90565 0.92675 1.46172 1.62877 1.05800 1.21139 1.20746 0.77513 0.83079 0.87770 1.90690 1.48692 1.76920 1.30067 1.22136 0.99086 0.95617 0.95339 0.85562 1.22904 1.01435 0.90154 0.92936 1.63209 1.32525 1.07267 1.26340 1.22454 0.90941 0.91630 1.01538 1.23705 0.93666 0.97538 0.96742 1.23616 0.93801 1.00834 0.92553 1.65074 1.23132 1.37962 1.03424 1.23675 0.88012 1.00491 0.96751 1.21720 0.98824 0.93430 1.00300 1.19618 0.94323 0.95967 0.95117 0.92790 0.99274 0.95928 0.95750 0.93687 0.75307 0.94216 0.88738 0.83209 0.93134 0.87733 0.91066 0.91182 0.83732 0.87606 0.88653 0.91833 0.90768 0.94462 0.96165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 12.73 21.45 0.27 -55.69 16 2 C 0.02 1.10 5.46 84.65 0.46 1.56 16 3 Si 0.95 42.92 26.80 68.60 1.84 44.76 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.50 -26.62 5.51 -16.16 -0.09 -26.71 16 8 C 0.01 0.51 5.97 30.10 0.18 0.69 16 9 C -0.10 -4.28 5.50 30.66 0.17 -4.11 16 10 C 0.17 6.33 2.35 44.96 0.11 6.43 16 11 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 12 N -0.71 -20.43 5.07 -442.68 -2.25 -22.67 16 13 C 0.52 15.33 4.78 87.66 0.42 15.75 16 14 O -0.58 -22.51 15.25 -3.04 -0.05 -22.56 16 15 C -0.10 -2.03 3.10 -10.59 -0.03 -2.06 16 16 H 0.13 1.99 8.12 -2.39 -0.02 1.98 16 17 C 0.06 1.09 6.91 86.71 0.60 1.69 16 18 N -0.66 -10.14 7.53 -502.56 -3.78 -13.92 16 19 C 0.06 0.91 7.03 86.06 0.60 1.52 16 20 C -0.11 -2.11 1.10 -52.01 -0.06 -2.16 16 21 C 0.02 0.56 7.53 86.02 0.65 1.20 16 22 N -0.67 -14.12 8.55 -539.21 -4.61 -18.73 16 23 C 0.04 0.67 8.17 86.01 0.70 1.37 16 24 C -0.10 -3.74 5.40 30.66 0.17 -3.57 16 25 C -0.01 -0.54 5.59 30.12 0.17 -0.37 16 26 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 27 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 28 H 0.02 1.33 7.07 -2.39 -0.02 1.31 16 29 H 0.02 1.10 7.71 -2.39 -0.02 1.09 16 30 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.41 9.03 8.60 -92.71 -0.80 8.23 16 32 H 0.04 0.98 7.24 -2.39 -0.02 0.96 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.35 4.33 8.92 -89.69 -0.80 3.53 16 35 H 0.05 0.73 7.75 -2.39 -0.02 0.71 16 36 H 0.10 1.14 7.75 -2.38 -0.02 1.12 16 37 H 0.07 2.37 5.82 -2.38 -0.01 2.35 16 38 H 0.07 1.73 7.87 -2.39 -0.02 1.71 16 39 H 0.35 5.63 8.85 -89.69 -0.79 4.83 16 40 H 0.11 1.19 7.87 -2.39 -0.02 1.17 16 41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.04 1.56 5.17 -2.38 -0.01 1.54 16 45 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -68.45 343.28 -5.90 -74.34 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -1.37 Total: 23.25 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 4.04 Total: -8.77 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -10.37 Total: -111.02 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.84 Total: 44.76 kcal Total: -68.45 -5.90 -74.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220094912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.822 kcal (2) G-P(sol) polarization free energy of solvation -68.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds