Wall clock time and date at job start Fri Apr 10 2020 17:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46820 * 2 1 4 4 C 1.50696 * 109.47094 * 120.00091 * 2 1 3 5 5 O 1.21279 * 119.99989 * 100.33127 * 4 2 1 6 6 N 1.34778 * 120.00108 * 280.32309 * 4 2 1 7 7 C 1.46505 * 119.99902 * 5.11892 * 6 4 2 8 8 C 1.46497 * 120.00293 * 185.11293 * 6 4 2 9 9 C 1.52997 * 109.47197 * 274.42271 * 8 6 4 10 10 H 1.09002 * 112.73909 * 43.19686 * 9 8 6 11 11 C 1.53497 * 113.52306 * 272.40375 * 9 8 6 12 12 C 1.53760 * 83.25812 * 218.97546 * 11 9 8 13 13 N 1.47067 * 87.88745 * 26.23730 * 12 11 9 14 14 C 1.36931 * 136.05467 * 152.96649 * 13 12 11 15 15 H 1.08003 * 120.00149 * 176.42812 * 14 13 12 16 16 C 1.38809 * 120.00211 * 356.15726 * 14 13 12 17 17 N 1.31617 * 119.99949 * 0.27518 * 16 14 13 18 18 Si 1.86800 * 120.00056 * 180.27685 * 16 14 13 19 19 H 1.48498 * 109.47158 * 90.00059 * 18 16 14 20 20 H 1.48501 * 109.47157 * 209.99808 * 18 16 14 21 21 H 1.48501 * 109.47135 * 329.99548 * 18 16 14 22 22 N 1.46500 * 109.47029 * 240.00311 * 2 1 3 23 23 C 1.34428 * 126.82257 * 324.99613 * 22 2 1 24 24 N 1.30830 * 108.07667 * 179.97438 * 23 22 2 25 25 C 1.33244 * 109.82946 * 0.02562 * 24 23 22 26 26 N 1.30709 * 108.94814 * 359.75063 * 25 24 23 27 27 H 1.09002 * 109.46809 * 170.86088 * 1 2 3 28 28 H 1.08996 * 109.47071 * 290.85936 * 1 2 3 29 29 H 1.09000 * 109.47388 * 50.86506 * 1 2 3 30 30 H 1.09006 * 109.46743 * 266.47791 * 7 6 4 31 31 H 1.09001 * 109.46778 * 26.47314 * 7 6 4 32 32 H 1.08997 * 109.47356 * 146.47734 * 7 6 4 33 33 H 1.08997 * 109.47096 * 154.42224 * 8 6 4 34 34 H 1.08996 * 109.47084 * 34.42551 * 8 6 4 35 35 H 1.08998 * 114.20509 * 332.72988 * 11 9 8 36 36 H 1.08992 * 114.20792 * 105.35931 * 11 9 8 37 37 H 1.09008 * 113.46328 * 271.50168 * 12 11 9 38 38 H 1.09003 * 113.55202 * 140.98791 * 12 11 9 39 39 H 0.97005 * 119.99979 * 180.02562 * 17 16 14 40 40 H 1.07996 * 125.96267 * 359.97438 * 23 22 2 41 41 H 1.08002 * 125.52560 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4121 -1.8597 1.1545 6 7 2.0598 -0.0685 2.4152 7 6 1.4981 1.2796 2.5311 8 6 2.6511 -0.7189 3.5872 9 6 1.5994 -1.5972 4.2679 10 1 1.0089 -2.1751 3.5570 11 6 0.7483 -0.8450 5.3004 12 6 0.8778 -2.1558 6.0937 13 7 2.1367 -2.4029 5.3747 14 6 3.2963 -3.0873 5.6237 15 1 4.0618 -3.1471 4.8641 16 6 3.4904 -3.6995 6.8542 17 7 2.5575 -3.6268 7.7799 18 14 5.0756 -4.6265 7.1966 19 1 6.0762 -3.6973 7.7802 20 1 4.8071 -5.7296 8.1538 21 1 5.6036 -5.1896 5.9280 22 7 2.0183 -0.6905 -1.1962 23 6 1.4558 -1.7518 -1.7999 24 7 2.1932 -2.0692 -2.8330 25 6 3.2305 -1.2375 -2.9205 26 7 3.1644 -0.3722 -1.9430 27 1 -0.3633 -1.0147 -0.1632 28 1 -0.3633 0.3659 0.9603 29 1 -0.3634 0.6486 -0.7971 30 1 2.2878 2.0162 2.3826 31 1 0.7256 1.4176 1.7745 32 1 1.0632 1.4081 3.5222 33 1 2.9986 0.0406 4.2875 34 1 3.4927 -1.3365 3.2739 35 1 1.2498 0.0086 5.7564 36 1 -0.2650 -0.6216 4.9668 37 1 0.0971 -2.8810 5.8640 38 1 1.0120 -2.0052 7.1649 39 1 2.6933 -4.0543 8.6400 40 1 0.5529 -2.2547 -1.4868 41 1 3.9987 -1.2700 -3.6789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233752860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:57 Heat of formation + Delta-G solvation = 133.795091 kcal Electronic energy + Delta-G solvation = -23956.857179 eV Core-core repulsion = 20490.943938 eV Total energy + Delta-G solvation = -3465.913241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.23196 -40.09586 -38.09285 -35.47915 -35.15709 -32.19359 -31.48111 -30.42809 -28.50296 -27.93111 -26.78995 -25.07287 -23.47626 -22.90432 -22.00097 -21.46087 -19.54029 -19.16626 -17.48606 -17.41607 -16.78028 -16.05992 -15.56523 -15.24922 -15.10446 -14.59734 -14.51869 -14.22177 -13.79756 -13.59860 -13.52210 -13.02246 -12.74236 -12.65664 -12.57425 -12.24985 -11.88569 -11.75948 -11.54195 -11.13930 -10.89519 -10.77820 -10.47686 -10.43948 -10.12163 -9.85544 -9.83987 -9.83342 -9.65517 -9.40685 -8.78955 -8.43657 -6.87852 -5.75419 -3.08734 1.47723 1.97612 2.47505 2.89677 3.01772 3.40429 3.46008 3.48400 4.05251 4.19989 4.24532 4.40410 4.47164 4.68785 4.81248 5.00595 5.04588 5.14599 5.18792 5.23435 5.39825 5.45905 5.51035 5.61556 5.70885 5.90868 6.06969 6.12067 6.22046 6.32498 6.35060 6.43055 6.62570 6.63781 6.79025 7.21427 7.34011 7.39557 7.58311 7.97704 8.00076 8.07105 9.05390 9.71811 10.64220 11.41350 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019690 B = 0.003995 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.723940 B = 7006.369504 C = 7879.841913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.126 0.874 4 C 0.498 3.502 5 O -0.515 6.515 6 N -0.603 5.603 7 C 0.066 3.934 8 C 0.118 3.882 9 C 0.135 3.865 10 H 0.044 0.956 11 C -0.167 4.167 12 C 0.150 3.850 13 N -0.599 5.599 14 C -0.216 4.216 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.920 5.920 18 Si 0.911 3.089 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 N -0.363 5.363 23 C 0.276 3.724 24 N -0.548 5.548 25 C 0.200 3.800 26 N -0.320 5.320 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.021 0.979 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.215 0.785 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 13.335 -15.317 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.144 0.856 4 C 0.282 3.718 5 O -0.389 6.389 6 N -0.337 5.337 7 C -0.077 4.077 8 C -0.005 4.005 9 C 0.027 3.973 10 H 0.061 0.939 11 C -0.205 4.205 12 C 0.024 3.976 13 N -0.325 5.325 14 C -0.343 4.343 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.567 5.567 18 Si 0.741 3.259 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 N -0.154 5.154 23 C -0.020 4.020 24 N -0.276 5.276 25 C -0.103 4.103 26 N -0.147 5.147 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.231 0.769 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.283 12.837 -15.174 20.846 hybrid contribution 0.666 -0.685 0.458 1.059 sum -5.618 12.152 -14.716 19.895 Atomic orbital electron populations 1.22254 0.90074 1.04834 1.05110 1.21251 0.96519 0.97712 0.81278 0.85637 1.20487 0.79753 0.87224 0.84359 1.90815 1.46534 1.16560 1.84967 1.47843 1.59563 1.16907 1.09374 1.22046 0.98633 0.83075 1.03955 1.21954 0.97277 0.96597 0.84663 1.22400 0.92536 0.91109 0.91262 0.93899 1.23790 0.98039 0.98991 0.99716 1.22117 0.86960 0.89879 0.98630 1.45673 1.13184 1.59107 1.14560 1.18915 0.91563 1.25994 0.97847 0.90310 1.24761 0.98230 1.01101 0.96180 1.69825 1.33105 1.48347 1.05448 0.86137 0.82678 0.79304 0.77798 1.21482 1.21600 1.20634 1.50081 1.19213 1.24584 1.21493 1.25893 0.99123 0.87657 0.89354 1.70580 1.07230 1.28684 1.21065 1.25975 0.97248 0.90019 0.97094 1.78028 1.03015 1.25452 1.08200 0.90388 0.88534 0.89942 0.92298 0.90986 0.89925 0.89912 0.90275 0.90527 0.92899 0.96112 0.90590 0.93708 0.76858 0.76694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.64 37.16 0.32 -0.72 16 2 C 0.14 1.42 2.92 -69.08 -0.20 1.22 16 3 H 0.13 1.05 7.40 -51.93 -0.38 0.66 16 4 C 0.50 7.22 6.88 -10.99 -0.08 7.15 16 5 O -0.51 -10.20 16.06 5.56 0.09 -10.11 16 6 N -0.60 -8.01 2.88 -181.57 -0.52 -8.53 16 7 C 0.07 0.53 9.82 59.85 0.59 1.12 16 8 C 0.12 2.07 5.29 -4.05 -0.02 2.05 16 9 C 0.14 2.73 4.28 -72.39 -0.31 2.42 16 10 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 11 C -0.17 -2.96 7.98 -26.08 -0.21 -3.16 16 12 C 0.15 3.50 7.49 -8.36 -0.06 3.44 16 13 N -0.60 -15.41 3.65 -176.81 -0.64 -16.05 16 14 C -0.22 -6.15 10.55 -15.06 -0.16 -6.31 16 15 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 17 N -0.92 -27.48 11.44 55.49 0.63 -26.85 16 18 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 N -0.36 -4.60 3.19 -57.24 -0.18 -4.79 16 23 C 0.28 3.38 11.50 -90.66 -1.04 2.34 16 24 N -0.55 -7.49 11.19 -15.83 -0.18 -7.66 16 25 C 0.20 2.52 13.03 -91.81 -1.20 1.32 16 26 N -0.32 -4.48 12.70 29.29 0.37 -4.11 16 27 H 0.08 0.50 6.77 -51.93 -0.35 0.15 16 28 H 0.10 0.49 6.15 -51.93 -0.32 0.17 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.37 4.60 -51.93 -0.24 0.13 16 32 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 33 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 34 H 0.08 1.66 7.64 -51.93 -0.40 1.27 16 35 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.08 1.96 6.97 -51.93 -0.36 1.60 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.22 1.87 7.11 -52.49 -0.37 1.50 16 41 H 0.22 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -37.59 341.15 -8.52 -46.11 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.74 Total: -1.36 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -2.46 Total: 10.58 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -0.52 Total: -67.99 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.59 -8.52 -46.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233752860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.901 kcal (2) G-P(sol) polarization free energy of solvation -37.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds