Wall clock time and date at job start Fri Apr 10 2020 17:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46820 * 2 1 4 4 C 1.50696 * 109.47094 * 120.00091 * 2 1 3 5 5 O 1.21279 * 119.99989 * 100.33127 * 4 2 1 6 6 N 1.34778 * 120.00108 * 280.32309 * 4 2 1 7 7 C 1.46505 * 119.99902 * 5.11892 * 6 4 2 8 8 C 1.46497 * 120.00293 * 185.11293 * 6 4 2 9 9 C 1.52997 * 109.47197 * 274.42271 * 8 6 4 10 10 H 1.09002 * 112.73909 * 43.19686 * 9 8 6 11 11 C 1.53497 * 113.52306 * 272.40375 * 9 8 6 12 12 C 1.53760 * 83.25812 * 218.97546 * 11 9 8 13 13 N 1.47067 * 87.88745 * 26.23730 * 12 11 9 14 14 C 1.36931 * 136.05467 * 152.96649 * 13 12 11 15 15 H 1.08003 * 120.00149 * 176.42812 * 14 13 12 16 16 C 1.38809 * 120.00211 * 356.15726 * 14 13 12 17 17 N 1.31617 * 119.99949 * 0.27518 * 16 14 13 18 18 Si 1.86800 * 120.00056 * 180.27685 * 16 14 13 19 19 H 1.48498 * 109.47158 * 90.00059 * 18 16 14 20 20 H 1.48501 * 109.47157 * 209.99808 * 18 16 14 21 21 H 1.48501 * 109.47135 * 329.99548 * 18 16 14 22 22 N 1.46500 * 109.47029 * 240.00311 * 2 1 3 23 23 C 1.34428 * 126.82257 * 324.99613 * 22 2 1 24 24 N 1.30830 * 108.07667 * 179.97438 * 23 22 2 25 25 C 1.33244 * 109.82946 * 0.02562 * 24 23 22 26 26 N 1.30709 * 108.94814 * 359.75063 * 25 24 23 27 27 H 1.09002 * 109.46809 * 170.86088 * 1 2 3 28 28 H 1.08996 * 109.47071 * 290.85936 * 1 2 3 29 29 H 1.09000 * 109.47388 * 50.86506 * 1 2 3 30 30 H 1.09006 * 109.46743 * 266.47791 * 7 6 4 31 31 H 1.09001 * 109.46778 * 26.47314 * 7 6 4 32 32 H 1.08997 * 109.47356 * 146.47734 * 7 6 4 33 33 H 1.08997 * 109.47096 * 154.42224 * 8 6 4 34 34 H 1.08996 * 109.47084 * 34.42551 * 8 6 4 35 35 H 1.08998 * 114.20509 * 332.72988 * 11 9 8 36 36 H 1.08992 * 114.20792 * 105.35931 * 11 9 8 37 37 H 1.09008 * 113.46328 * 271.50168 * 12 11 9 38 38 H 1.09003 * 113.55202 * 140.98791 * 12 11 9 39 39 H 0.97005 * 119.99979 * 180.02562 * 17 16 14 40 40 H 1.07996 * 125.96267 * 359.97438 * 23 22 2 41 41 H 1.08002 * 125.52560 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4121 -1.8597 1.1545 6 7 2.0598 -0.0685 2.4152 7 6 1.4981 1.2796 2.5311 8 6 2.6511 -0.7189 3.5872 9 6 1.5994 -1.5972 4.2679 10 1 1.0089 -2.1751 3.5570 11 6 0.7483 -0.8450 5.3004 12 6 0.8778 -2.1558 6.0937 13 7 2.1367 -2.4029 5.3747 14 6 3.2963 -3.0873 5.6237 15 1 4.0618 -3.1471 4.8641 16 6 3.4904 -3.6995 6.8542 17 7 2.5575 -3.6268 7.7799 18 14 5.0756 -4.6265 7.1966 19 1 6.0762 -3.6973 7.7802 20 1 4.8071 -5.7296 8.1538 21 1 5.6036 -5.1896 5.9280 22 7 2.0183 -0.6905 -1.1962 23 6 1.4558 -1.7518 -1.7999 24 7 2.1932 -2.0692 -2.8330 25 6 3.2305 -1.2375 -2.9205 26 7 3.1644 -0.3722 -1.9430 27 1 -0.3633 -1.0147 -0.1632 28 1 -0.3633 0.3659 0.9603 29 1 -0.3634 0.6486 -0.7971 30 1 2.2878 2.0162 2.3826 31 1 0.7256 1.4176 1.7745 32 1 1.0632 1.4081 3.5222 33 1 2.9986 0.0406 4.2875 34 1 3.4927 -1.3365 3.2739 35 1 1.2498 0.0086 5.7564 36 1 -0.2650 -0.6216 4.9668 37 1 0.0971 -2.8810 5.8640 38 1 1.0120 -2.0052 7.1649 39 1 2.6933 -4.0543 8.6400 40 1 0.5529 -2.2547 -1.4868 41 1 3.9987 -1.2700 -3.6789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233752860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:57 Heat of formation + Delta-G solvation = 108.491256 kcal Electronic energy + Delta-G solvation = -23957.954436 eV Core-core repulsion = 20490.943938 eV Total energy + Delta-G solvation = -3467.010498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.15487 -41.26167 -39.74232 -36.65896 -36.06572 -34.29799 -32.41828 -31.37415 -29.93138 -29.65629 -27.66236 -25.93191 -25.44014 -24.27518 -22.96558 -22.53534 -21.10603 -20.44040 -18.80557 -18.39446 -18.34232 -17.27653 -16.89412 -16.60380 -16.15009 -15.97920 -15.78167 -15.48251 -15.19629 -14.79787 -14.40021 -14.32470 -13.82590 -13.64500 -13.55203 -13.38731 -13.28971 -13.01882 -12.84423 -12.67139 -12.53529 -12.43517 -12.25103 -11.82523 -11.64790 -11.51024 -11.26452 -11.08760 -10.87996 -10.81083 -10.49947 -9.68999 -8.93227 -7.93769 -5.27343 0.53248 1.11736 1.40000 1.41535 1.44115 1.50582 1.92470 2.01126 2.44257 3.21025 3.26320 3.43469 3.45458 3.46428 3.73351 3.81232 3.93732 4.17522 4.22848 4.26477 4.29108 4.49833 4.53999 4.65422 4.68069 4.80325 4.88850 4.91193 5.00970 5.05834 5.11424 5.21364 5.23015 5.39126 5.44096 5.53534 5.72904 5.76776 5.94473 6.29033 6.89659 6.97453 7.05872 7.57398 8.58404 9.22582 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019690 B = 0.003995 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.723940 B = 7006.369504 C = 7879.841913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.150 0.850 4 C 0.491 3.509 5 O -0.580 6.580 6 N -0.597 5.597 7 C 0.055 3.945 8 C 0.133 3.867 9 C 0.137 3.863 10 H 0.027 0.973 11 C -0.123 4.123 12 C 0.138 3.862 13 N -0.633 5.633 14 C -0.226 4.226 15 H 0.068 0.932 16 C -0.061 4.061 17 N -0.948 5.948 18 Si 0.972 3.028 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.280 1.280 22 N -0.370 5.370 23 C 0.273 3.727 24 N -0.575 5.575 25 C 0.195 3.805 26 N -0.350 5.350 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.033 0.967 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.009 0.991 38 H 0.046 0.954 39 H 0.249 0.751 40 H 0.241 0.759 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 15.876 -16.327 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.040 3.960 3 H 0.167 0.833 4 C 0.278 3.722 5 O -0.459 6.459 6 N -0.330 5.330 7 C -0.086 4.086 8 C 0.009 3.991 9 C 0.029 3.971 10 H 0.045 0.955 11 C -0.161 4.161 12 C 0.012 3.988 13 N -0.359 5.359 14 C -0.354 4.354 15 H 0.086 0.914 16 C -0.254 4.254 17 N -0.597 5.597 18 Si 0.801 3.199 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.205 1.205 22 N -0.160 5.160 23 C -0.024 4.024 24 N -0.303 5.303 25 C -0.107 4.107 26 N -0.177 5.177 27 H 0.093 0.907 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.052 0.948 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.027 0.973 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.257 0.743 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.540 15.459 -16.203 23.630 hybrid contribution 1.014 -1.477 0.730 1.935 sum -6.526 13.982 -15.473 21.852 Atomic orbital electron populations 1.22358 0.86663 1.05572 1.07212 1.21511 0.98878 0.97493 0.78158 0.83259 1.21366 0.78515 0.86616 0.85739 1.90788 1.49461 1.19624 1.86054 1.47874 1.58854 1.18504 1.07725 1.22471 1.00098 0.80031 1.05981 1.21474 0.95189 0.96204 0.86257 1.22472 0.93139 0.90788 0.90669 0.95507 1.23540 1.00096 0.96340 0.96132 1.22188 0.85951 0.93043 0.97590 1.46084 1.13148 1.59472 1.17171 1.19117 0.92713 1.25915 0.97651 0.91372 1.25517 1.01304 1.02410 0.96155 1.69990 1.34731 1.49397 1.05567 0.85178 0.79343 0.78055 0.77364 1.20516 1.21601 1.20529 1.50263 1.18893 1.24931 1.21884 1.26462 0.99633 0.87409 0.88874 1.70587 1.08043 1.29483 1.22194 1.26616 0.97508 0.89303 0.97319 1.77948 1.04108 1.26624 1.09024 0.90694 0.86614 0.87264 0.90593 0.87448 0.88833 0.88498 0.94837 0.88818 0.88386 0.97290 0.93552 0.94162 0.74297 0.73918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.64 71.98 0.62 -0.75 16 2 C 0.15 2.58 2.92 44.24 0.13 2.71 16 3 H 0.15 1.91 7.40 -2.38 -0.02 1.89 16 4 C 0.49 13.69 6.88 87.66 0.60 14.29 16 5 O -0.58 -23.58 16.06 -3.03 -0.05 -23.63 16 6 N -0.60 -14.62 2.88 -846.77 -2.44 -17.06 16 7 C 0.05 0.63 9.82 127.77 1.26 1.89 16 8 C 0.13 4.62 5.29 86.38 0.46 5.07 16 9 C 0.14 5.45 4.28 41.79 0.18 5.63 16 10 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 11 C -0.12 -4.04 7.98 31.02 0.25 -3.79 16 12 C 0.14 6.49 7.49 83.27 0.62 7.12 16 13 N -0.63 -33.21 3.65 -713.31 -2.60 -35.81 16 14 C -0.23 -13.27 10.55 84.03 0.89 -12.38 16 15 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 16 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 17 N -0.95 -58.12 11.44 21.65 0.25 -57.88 16 18 Si 0.97 47.68 29.55 68.60 2.03 49.71 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 22 N -0.37 -8.83 3.19 -335.02 -1.07 -9.90 16 23 C 0.27 6.38 11.50 180.36 2.07 8.46 16 24 N -0.58 -15.35 11.19 -204.01 -2.28 -17.63 16 25 C 0.20 4.79 13.03 180.77 2.36 7.14 16 26 N -0.35 -9.48 12.70 -61.24 -0.78 -10.26 16 27 H 0.07 0.74 6.77 -2.39 -0.02 0.72 16 28 H 0.12 0.56 6.15 -2.39 -0.01 0.55 16 29 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.11 0.50 4.60 -2.39 -0.01 0.49 16 32 H 0.09 0.95 8.04 -2.39 -0.02 0.93 16 33 H 0.10 3.05 7.76 -2.39 -0.02 3.03 16 34 H 0.03 1.46 7.64 -2.39 -0.02 1.45 16 35 H 0.09 2.81 7.93 -2.39 -0.02 2.79 16 36 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.05 2.44 6.97 -2.39 -0.02 2.43 16 39 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 40 H 0.24 3.87 7.11 -2.91 -0.02 3.85 16 41 H 0.24 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -87.68 341.15 3.99 -83.69 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.04 Total: 6.49 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 9.90 Total: 32.29 kcal Atomic # 7 Polarization: -139.62 SS G_CDS: -8.92 Total: -148.54 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -87.68 3.99 -83.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233752860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.178 kcal (2) G-P(sol) polarization free energy of solvation -87.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds