Wall clock time and date at job start Fri Apr 10 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35494 * 126.98303 * 2 1 4 4 N 1.30517 * 107.30633 * 180.02562 * 3 2 1 5 5 N 1.28591 * 109.67778 * 359.73076 * 4 3 2 6 6 C 1.30524 * 109.67205 * 0.44862 * 5 4 3 7 7 C 1.50695 * 126.35048 * 179.82490 * 6 5 4 8 8 H 1.09003 * 110.46450 * 192.28122 * 7 6 5 9 9 C 1.54380 * 110.41260 * 69.86100 * 7 6 5 10 10 C 1.54257 * 105.06099 * 217.37004 * 9 7 6 11 11 C 1.54382 * 105.06298 * 0.02562 * 10 9 7 12 12 N 1.48561 * 104.59193 * 23.85367 * 11 10 9 13 13 C 1.46906 * 110.99957 * 200.95959 * 12 11 10 14 14 C 1.50695 * 109.47218 * 285.42016 * 13 12 11 15 15 O 1.21285 * 120.00087 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00245 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00006 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47106 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99515 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00176 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00200 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00139 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47145 * 89.99836 * 22 20 18 24 24 H 1.48496 * 109.47547 * 210.00333 * 22 20 18 25 25 H 1.48499 * 109.47030 * 330.00237 * 22 20 18 26 26 H 1.09000 * 109.46794 * 269.99645 * 1 2 3 27 27 H 1.08998 * 109.47091 * 29.99559 * 1 2 3 28 28 H 1.08996 * 109.46997 * 149.99588 * 1 2 3 29 29 H 1.07998 * 126.34264 * 0.02562 * 3 2 1 30 30 H 1.08999 * 110.32020 * 336.26724 * 9 7 6 31 31 H 1.08996 * 110.32366 * 98.37104 * 9 7 6 32 32 H 1.09006 * 110.32210 * 118.89291 * 10 9 7 33 33 H 1.08996 * 110.32478 * 241.10590 * 10 9 7 34 34 H 1.08995 * 110.41580 * 265.07323 * 11 10 9 35 35 H 1.09007 * 110.41294 * 142.62691 * 11 10 9 36 36 H 1.08998 * 109.46779 * 165.41350 * 13 12 11 37 37 H 1.09001 * 109.46544 * 45.41740 * 13 12 11 38 38 H 0.96998 * 119.99803 * 359.97438 * 16 14 13 39 39 H 1.09001 * 109.47001 * 59.99676 * 17 16 14 40 40 H 1.09000 * 109.47574 * 299.99892 * 17 16 14 41 41 H 0.96999 * 120.00061 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 -0.0006 5 7 3.5091 -0.6430 0.0048 6 6 2.2801 -1.0825 -0.0006 7 6 1.8476 -2.5260 -0.0009 8 1 0.7835 -2.6051 -0.2232 9 6 2.1637 -3.1831 1.3599 10 6 2.6078 -4.6201 1.0177 11 6 2.5233 -4.7104 -0.5212 12 7 2.6428 -3.3044 -0.9857 13 6 2.0984 -3.1497 -2.3414 14 6 3.0589 -3.7435 -3.3392 15 8 4.0953 -4.2456 -2.9587 16 7 2.7669 -3.7156 -4.6547 17 6 3.7010 -4.2923 -5.6247 18 6 3.1425 -4.1338 -7.0155 19 1 2.1874 -3.6513 -7.1620 20 6 3.8507 -4.6047 -8.1006 21 7 3.3635 -4.4659 -9.3143 22 14 5.5029 -5.4386 -7.8471 23 1 5.2978 -6.8977 -7.6623 24 1 6.3623 -5.2062 -9.0357 25 1 6.1622 -4.8748 -6.6418 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.9702 2.1169 0.0004 30 1 2.9697 -2.6469 1.8610 31 1 1.2732 -3.1998 1.9881 32 1 3.6318 -4.7894 1.3507 33 1 1.9347 -5.3439 1.4772 34 1 1.5649 -5.1311 -0.8253 35 1 3.3445 -5.3111 -0.9125 36 1 1.9579 -2.0907 -2.5578 37 1 1.1400 -3.6646 -2.4089 38 1 1.9383 -3.3137 -4.9591 39 1 3.8415 -5.3514 -5.4085 40 1 4.6593 -3.7774 -5.5568 41 1 3.8620 -4.7969 -10.0777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320449010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:11 Heat of formation + Delta-G solvation = 61.044820 kcal Electronic energy + Delta-G solvation = -23605.805963 eV Core-core repulsion = 20136.738033 eV Total energy + Delta-G solvation = -3469.067929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.23505 -39.63788 -38.12088 -35.25416 -34.23626 -32.55348 -32.21433 -31.63950 -28.43888 -28.39706 -27.81495 -26.09743 -23.07605 -22.38725 -21.98354 -21.12820 -20.15258 -19.79018 -17.64621 -17.18365 -16.49617 -16.30781 -16.07101 -15.71577 -15.19418 -14.99230 -14.78435 -14.13900 -13.97172 -13.79624 -13.56044 -13.32433 -13.01272 -12.58400 -12.50185 -12.25849 -12.19894 -11.96113 -11.50696 -11.32744 -11.31256 -10.98466 -10.75430 -10.70767 -10.39616 -10.35040 -9.94168 -9.48207 -9.33332 -9.18809 -8.75703 -8.51473 -8.09289 -6.20182 -4.22289 1.61826 2.20178 2.84091 3.26841 3.30083 3.35701 3.46244 3.52517 3.91754 4.17973 4.24455 4.35894 4.37492 4.43453 4.54142 4.64456 4.70813 4.88221 4.92768 5.15104 5.17625 5.22000 5.28213 5.35172 5.43188 5.50124 5.62151 5.63357 5.81665 5.97156 6.04159 6.10544 6.59182 6.71173 6.75000 6.88691 7.11218 7.27193 7.42217 8.16534 8.54222 8.71452 8.76963 8.99802 9.40529 10.91767 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.003666 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.035015 B = 7636.160935 C = 8267.912503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.481 5.481 3 C 0.144 3.856 4 N -0.298 5.298 5 N -0.256 5.256 6 C 0.185 3.815 7 C 0.148 3.852 8 H 0.067 0.933 9 C -0.110 4.110 10 C -0.120 4.120 11 C 0.036 3.964 12 N -0.467 5.467 13 C 0.026 3.974 14 C 0.504 3.496 15 O -0.533 6.533 16 N -0.709 5.709 17 C 0.223 3.777 18 C -0.543 4.543 19 H 0.078 0.922 20 C 0.078 3.922 21 N -0.894 5.894 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.259 1.259 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.217 0.783 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.394 0.606 39 H 0.020 0.980 40 H 0.025 0.975 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 6.697 22.753 26.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.173 5.173 3 C -0.143 4.143 4 N -0.138 5.138 5 N -0.095 5.095 6 C -0.083 4.083 7 C 0.037 3.963 8 H 0.085 0.915 9 C -0.149 4.149 10 C -0.158 4.158 11 C -0.091 4.091 12 N -0.191 5.191 13 C -0.106 4.106 14 C 0.287 3.713 15 O -0.410 6.410 16 N -0.359 5.359 17 C 0.100 3.900 18 C -0.581 4.581 19 H 0.096 0.904 20 C -0.126 4.126 21 N -0.531 5.531 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.184 1.184 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.234 0.766 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.227 0.773 39 H 0.038 0.962 40 H 0.043 0.957 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.408 6.484 22.762 25.469 hybrid contribution -2.080 -0.158 -0.450 2.134 sum -11.488 6.326 22.312 25.881 Atomic orbital electron populations 1.22111 0.75667 1.05316 1.04107 1.46247 1.09030 1.06848 1.55202 1.26444 0.87464 0.94732 1.05688 1.74374 1.17919 1.03743 1.17731 1.74403 1.16659 1.02178 1.16306 1.24492 0.87366 0.91272 1.05170 1.20834 0.95393 0.84887 0.95217 0.91494 1.22291 1.02006 0.96359 0.94230 1.22289 1.02691 0.95526 0.95340 1.23227 1.01737 0.89453 0.94732 1.64943 1.48319 1.06825 0.99061 1.22188 0.96360 1.02135 0.89898 1.20137 0.87371 0.80484 0.83269 1.90659 1.25710 1.45293 1.79325 1.46141 1.24320 1.59789 1.05670 1.19467 0.89530 0.93555 0.87407 1.21091 1.07677 1.40712 0.88617 0.90361 1.24789 0.97933 0.95066 0.94805 1.69880 1.38872 1.46039 0.98308 0.86816 0.83977 0.80418 0.78524 1.19855 1.20883 1.18373 0.89908 0.88779 0.89275 0.76642 0.89971 0.90937 0.90255 0.91037 0.93791 0.88016 0.88998 0.91857 0.77333 0.96217 0.95680 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.00 59.85 0.66 0.92 16 2 N -0.48 -4.35 3.15 -122.69 -0.39 -4.73 16 3 C 0.14 1.46 12.74 -89.95 -1.15 0.31 16 4 N -0.30 -4.58 12.21 29.69 0.36 -4.22 16 5 N -0.26 -4.26 12.21 32.80 0.40 -3.86 16 6 C 0.18 2.31 6.41 -154.98 -0.99 1.31 16 7 C 0.15 1.58 2.65 -67.21 -0.18 1.40 16 8 H 0.07 0.52 6.81 -51.93 -0.35 0.17 16 9 C -0.11 -1.01 6.54 -25.35 -0.17 -1.18 16 10 C -0.12 -1.15 7.00 -25.35 -0.18 -1.32 16 11 C 0.04 0.44 5.92 -2.18 -0.01 0.43 16 12 N -0.47 -6.63 4.65 -224.90 -1.04 -7.68 16 13 C 0.03 0.37 5.26 -4.98 -0.03 0.35 16 14 C 0.50 9.93 7.68 -10.99 -0.08 9.85 16 15 O -0.53 -12.60 15.23 5.55 0.08 -12.52 16 16 N -0.71 -14.70 5.55 -61.47 -0.34 -15.04 16 17 C 0.22 5.61 4.50 -5.19 -0.02 5.59 16 18 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16 19 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 20 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 21 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 22 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 26 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.27 7.10 -51.93 -0.37 -0.10 16 29 H 0.22 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.47 7.75 -51.93 -0.40 0.07 16 35 H 0.10 1.54 7.24 -51.93 -0.38 1.17 16 36 H 0.09 1.26 7.78 -51.93 -0.40 0.86 16 37 H 0.06 0.72 7.77 -51.93 -0.40 0.31 16 38 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 39 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 40 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -38.20 340.47 -8.21 -46.41 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.94 Total: 0.97 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.59 Total: 4.35 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.24 Total: -61.54 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -38.20 -8.21 -46.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320449010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.458 kcal (2) G-P(sol) polarization free energy of solvation -38.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds