Wall clock time and date at job start Fri Apr 10 2020 17:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35494 * 126.98303 * 2 1 4 4 N 1.30517 * 107.30633 * 180.02562 * 3 2 1 5 5 N 1.28591 * 109.67778 * 359.73076 * 4 3 2 6 6 C 1.30524 * 109.67205 * 0.44862 * 5 4 3 7 7 C 1.50695 * 126.35048 * 179.82490 * 6 5 4 8 8 H 1.09003 * 110.46450 * 192.28122 * 7 6 5 9 9 C 1.54380 * 110.41260 * 69.86100 * 7 6 5 10 10 C 1.54257 * 105.06099 * 217.37004 * 9 7 6 11 11 C 1.54382 * 105.06298 * 0.02562 * 10 9 7 12 12 N 1.48561 * 104.59193 * 23.85367 * 11 10 9 13 13 C 1.46906 * 110.99957 * 200.95959 * 12 11 10 14 14 C 1.50695 * 109.47218 * 285.42016 * 13 12 11 15 15 O 1.21285 * 120.00087 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00245 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00006 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47106 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99515 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00176 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00200 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00139 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47145 * 89.99836 * 22 20 18 24 24 H 1.48496 * 109.47547 * 210.00333 * 22 20 18 25 25 H 1.48499 * 109.47030 * 330.00237 * 22 20 18 26 26 H 1.09000 * 109.46794 * 269.99645 * 1 2 3 27 27 H 1.08998 * 109.47091 * 29.99559 * 1 2 3 28 28 H 1.08996 * 109.46997 * 149.99588 * 1 2 3 29 29 H 1.07998 * 126.34264 * 0.02562 * 3 2 1 30 30 H 1.08999 * 110.32020 * 336.26724 * 9 7 6 31 31 H 1.08996 * 110.32366 * 98.37104 * 9 7 6 32 32 H 1.09006 * 110.32210 * 118.89291 * 10 9 7 33 33 H 1.08996 * 110.32478 * 241.10590 * 10 9 7 34 34 H 1.08995 * 110.41580 * 265.07323 * 11 10 9 35 35 H 1.09007 * 110.41294 * 142.62691 * 11 10 9 36 36 H 1.08998 * 109.46779 * 165.41350 * 13 12 11 37 37 H 1.09001 * 109.46544 * 45.41740 * 13 12 11 38 38 H 0.96998 * 119.99803 * 359.97438 * 16 14 13 39 39 H 1.09001 * 109.47001 * 59.99676 * 17 16 14 40 40 H 1.09000 * 109.47574 * 299.99892 * 17 16 14 41 41 H 0.96999 * 120.00061 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 -0.0006 5 7 3.5091 -0.6430 0.0048 6 6 2.2801 -1.0825 -0.0006 7 6 1.8476 -2.5260 -0.0009 8 1 0.7835 -2.6051 -0.2232 9 6 2.1637 -3.1831 1.3599 10 6 2.6078 -4.6201 1.0177 11 6 2.5233 -4.7104 -0.5212 12 7 2.6428 -3.3044 -0.9857 13 6 2.0984 -3.1497 -2.3414 14 6 3.0589 -3.7435 -3.3392 15 8 4.0953 -4.2456 -2.9587 16 7 2.7669 -3.7156 -4.6547 17 6 3.7010 -4.2923 -5.6247 18 6 3.1425 -4.1338 -7.0155 19 1 2.1874 -3.6513 -7.1620 20 6 3.8507 -4.6047 -8.1006 21 7 3.3635 -4.4659 -9.3143 22 14 5.5029 -5.4386 -7.8471 23 1 5.2978 -6.8977 -7.6623 24 1 6.3623 -5.2062 -9.0357 25 1 6.1622 -4.8748 -6.6418 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 1.9702 2.1169 0.0004 30 1 2.9697 -2.6469 1.8610 31 1 1.2732 -3.1998 1.9881 32 1 3.6318 -4.7894 1.3507 33 1 1.9347 -5.3439 1.4772 34 1 1.5649 -5.1311 -0.8253 35 1 3.3445 -5.3111 -0.9125 36 1 1.9579 -2.0907 -2.5578 37 1 1.1400 -3.6646 -2.4089 38 1 1.9383 -3.3137 -4.9591 39 1 3.8415 -5.3514 -5.4085 40 1 4.6593 -3.7774 -5.5568 41 1 3.8620 -4.7969 -10.0777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320449010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:10 Heat of formation + Delta-G solvation = 31.429149 kcal Electronic energy + Delta-G solvation = -23607.090195 eV Core-core repulsion = 20136.738033 eV Total energy + Delta-G solvation = -3470.352161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.04993 -40.90452 -39.39630 -36.14810 -35.92432 -34.43283 -33.44349 -32.48076 -30.28467 -29.19347 -28.29739 -27.44623 -24.23751 -23.70125 -23.05315 -22.13171 -21.39444 -20.94236 -19.18628 -18.26106 -17.69999 -17.39081 -17.16914 -16.79529 -16.49010 -16.36091 -16.01129 -15.66553 -15.04439 -14.78188 -14.67842 -14.37234 -14.21572 -13.93854 -13.77600 -13.35771 -13.32264 -13.02161 -12.86267 -12.70890 -12.42399 -12.32135 -12.14424 -11.96561 -11.67990 -11.48585 -11.21350 -11.02139 -10.93699 -10.82212 -10.21179 -9.93965 -9.47250 -8.42518 -6.49084 0.87117 1.29865 1.32811 1.46118 1.59259 1.73571 1.94190 2.25516 2.29437 2.92948 2.98736 3.25997 3.58502 3.76996 3.80591 3.87716 3.94894 4.03830 4.19564 4.21147 4.26520 4.44204 4.53250 4.54791 4.69984 4.74365 4.78072 4.89285 4.95027 5.00357 5.04822 5.18344 5.21736 5.23927 5.27123 5.51578 5.81801 5.81949 6.04395 6.08681 6.51290 6.85092 7.14494 7.43675 7.85587 8.72126 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019412 B = 0.003666 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.035015 B = 7636.160935 C = 8267.912503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.473 5.473 3 C 0.160 3.840 4 N -0.361 5.361 5 N -0.323 5.323 6 C 0.182 3.818 7 C 0.151 3.849 8 H 0.109 0.891 9 C -0.103 4.103 10 C -0.113 4.113 11 C 0.035 3.965 12 N -0.507 5.507 13 C 0.042 3.958 14 C 0.499 3.501 15 O -0.578 6.578 16 N -0.708 5.708 17 C 0.235 3.765 18 C -0.546 4.546 19 H 0.062 0.938 20 C 0.029 3.971 21 N -0.929 5.929 22 Si 0.934 3.066 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.267 1.267 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.260 0.740 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.408 0.592 39 H 0.012 0.988 40 H 0.004 0.996 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.136 6.971 24.395 29.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.164 5.164 3 C -0.129 4.129 4 N -0.200 5.200 5 N -0.162 5.162 6 C -0.088 4.088 7 C 0.041 3.959 8 H 0.127 0.873 9 C -0.142 4.142 10 C -0.151 4.151 11 C -0.092 4.092 12 N -0.232 5.232 13 C -0.089 4.089 14 C 0.286 3.714 15 O -0.457 6.457 16 N -0.359 5.359 17 C 0.111 3.889 18 C -0.584 4.584 19 H 0.080 0.920 20 C -0.171 4.171 21 N -0.568 5.568 22 Si 0.758 3.242 23 H -0.186 1.186 24 H -0.197 1.197 25 H -0.192 1.192 26 H 0.123 0.877 27 H 0.135 0.865 28 H 0.120 0.880 29 H 0.276 0.724 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.243 0.757 39 H 0.030 0.970 40 H 0.022 0.978 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.322 6.773 24.419 28.178 hybrid contribution -1.279 -0.161 -0.933 1.591 sum -13.600 6.611 23.486 27.933 Atomic orbital electron populations 1.22582 0.72179 1.07156 1.06145 1.46491 1.10858 1.05348 1.53681 1.27222 0.86406 0.96568 1.02667 1.74224 1.21157 1.03801 1.20804 1.74257 1.19739 1.03191 1.19011 1.24752 0.87031 0.92691 1.04322 1.21033 0.96855 0.83356 0.94659 0.87333 1.22292 1.02800 0.95202 0.93920 1.22264 1.02594 0.96817 0.93467 1.23178 1.01291 0.88329 0.96416 1.64774 1.50654 1.08235 0.99538 1.22037 0.95916 1.02305 0.88619 1.21176 0.87654 0.79288 0.83326 1.90641 1.27978 1.47127 1.79945 1.45990 1.24225 1.59940 1.05781 1.19039 0.89501 0.93071 0.87313 1.21276 1.07079 1.40065 0.89933 0.92025 1.25544 1.01205 0.95754 0.94607 1.69967 1.40461 1.47238 0.99137 0.85905 0.80064 0.79892 0.78330 1.18618 1.19672 1.19179 0.87730 0.86514 0.87991 0.72395 0.92578 0.87008 0.92138 0.87764 0.91384 0.92058 0.88215 0.87777 0.75685 0.97017 0.97843 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.16 11.00 127.77 1.41 1.56 16 2 N -0.47 -7.13 3.15 -542.08 -1.71 -8.84 16 3 C 0.16 2.95 12.74 180.11 2.30 5.24 16 4 N -0.36 -11.21 12.21 -59.99 -0.73 -11.95 16 5 N -0.32 -10.95 12.21 -50.15 -0.61 -11.56 16 6 C 0.18 4.25 6.41 137.97 0.88 5.13 16 7 C 0.15 2.79 2.65 44.31 0.12 2.91 16 8 H 0.11 1.09 6.81 -2.39 -0.02 1.08 16 9 C -0.10 -1.63 6.54 31.49 0.21 -1.43 16 10 C -0.11 -1.95 7.00 31.49 0.22 -1.73 16 11 C 0.03 0.82 5.92 86.45 0.51 1.33 16 12 N -0.51 -13.72 4.65 -865.46 -4.02 -17.74 16 13 C 0.04 1.13 5.26 85.55 0.45 1.58 16 14 C 0.50 19.60 7.68 87.66 0.67 20.27 16 15 O -0.58 -28.07 15.23 -3.05 -0.05 -28.11 16 16 N -0.71 -29.26 5.55 -466.79 -2.59 -31.85 16 17 C 0.23 11.99 4.50 85.64 0.38 12.38 16 18 C -0.55 -30.71 9.83 25.60 0.25 -30.46 16 19 H 0.06 3.59 7.84 -2.91 -0.02 3.57 16 20 C 0.03 1.69 5.47 84.65 0.46 2.16 16 21 N -0.93 -55.99 13.96 21.44 0.30 -55.70 16 22 Si 0.93 45.42 27.47 68.60 1.88 47.31 16 23 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.27 -13.24 6.54 99.48 0.65 -12.59 16 26 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.10 0.05 7.10 -2.39 -0.02 0.04 16 29 H 0.26 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.06 1.20 7.85 -2.39 -0.02 1.18 16 31 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.23 7.75 -2.39 -0.02 1.21 16 35 H 0.06 1.92 7.24 -2.38 -0.02 1.90 16 36 H 0.10 2.51 7.78 -2.39 -0.02 2.49 16 37 H 0.10 1.91 7.77 -2.39 -0.02 1.90 16 38 H 0.41 14.38 8.32 -92.71 -0.77 13.61 16 39 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 40 H 0.00 0.20 7.20 -2.39 -0.02 0.18 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -88.96 340.47 0.56 -88.40 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.22 Total: 11.09 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 7.86 Total: 18.95 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -9.36 Total: -137.63 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.05 Total: -28.11 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -88.96 0.56 -88.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320449010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.829 kcal (2) G-P(sol) polarization free energy of solvation -88.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds