Wall clock time and date at job start Fri Apr 10 2020 17:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.35484 * 126.98193 * 2 1 4 4 N 1.30518 * 107.30735 * 179.97438 * 3 2 1 5 5 N 1.28597 * 109.67260 * 359.73319 * 4 3 2 6 6 C 1.30513 * 109.67014 * 0.44551 * 5 4 3 7 7 C 1.50700 * 126.34550 * 179.82637 * 6 5 4 8 8 H 1.09000 * 110.59954 * 167.68948 * 7 6 5 9 9 C 1.54933 * 110.67031 * 290.87946 * 7 6 5 10 10 C 1.54593 * 102.92591 * 155.84811 * 9 7 6 11 11 C 1.53997 * 105.13807 * 338.04317 * 10 9 7 12 12 N 1.47899 * 107.05889 * 358.77516 * 11 10 9 13 13 C 1.46897 * 111.00068 * 145.84368 * 12 11 10 14 14 C 1.50700 * 109.47366 * 69.87158 * 13 12 11 15 15 O 1.21277 * 119.99758 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00321 * 180.02562 * 14 13 12 17 17 C 1.46493 * 120.00232 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.47570 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99368 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00401 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00143 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00067 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47121 * 90.00117 * 22 20 18 24 24 H 1.48497 * 109.47228 * 210.00597 * 22 20 18 25 25 H 1.48502 * 109.47076 * 330.00360 * 22 20 18 26 26 H 1.09002 * 109.46996 * 270.00469 * 1 2 3 27 27 H 1.08998 * 109.46895 * 29.99814 * 1 2 3 28 28 H 1.08994 * 109.46915 * 149.99774 * 1 2 3 29 29 H 1.07996 * 126.35027 * 0.02562 * 3 2 1 30 30 H 1.09007 * 110.72333 * 37.48738 * 9 7 6 31 31 H 1.09004 * 110.72411 * 274.20932 * 9 7 6 32 32 H 1.09004 * 110.30922 * 219.12663 * 10 9 7 33 33 H 1.08998 * 110.30989 * 96.95784 * 10 9 7 34 34 H 1.09004 * 109.91456 * 118.12612 * 11 10 9 35 35 H 1.08998 * 109.91596 * 239.41745 * 11 10 9 36 36 H 1.09001 * 109.46941 * 189.87529 * 13 12 11 37 37 H 1.09004 * 109.46820 * 309.87460 * 13 12 11 38 38 H 0.97004 * 119.99665 * 359.97438 * 16 14 13 39 39 H 1.09001 * 109.47308 * 299.99912 * 17 16 14 40 40 H 1.09004 * 109.47079 * 60.00226 * 17 16 14 41 41 H 0.96998 * 120.00197 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 0.0006 5 7 3.5090 -0.6431 0.0065 6 6 2.2801 -1.0824 0.0005 7 6 1.8476 -2.5260 0.0007 8 1 0.7815 -2.6070 0.2125 9 6 2.1931 -3.2006 -1.3506 10 6 2.2835 -4.6979 -0.9765 11 6 2.5518 -4.7181 0.5398 12 7 2.6383 -3.3100 0.9839 13 6 2.0974 -3.1517 2.3404 14 6 3.0228 -3.8111 3.3304 15 8 4.0336 -4.3585 2.9439 16 7 2.7271 -3.7925 4.6451 17 6 3.6270 -4.4330 5.6074 18 6 3.0714 -4.2718 6.9990 19 1 2.1413 -3.7446 7.1513 20 6 3.7511 -4.7965 8.0778 21 7 3.2665 -4.6554 9.2922 22 14 5.3603 -5.7077 7.8144 23 1 6.4905 -4.7472 7.8858 24 1 5.5219 -6.7416 8.8680 25 1 5.3477 -6.3589 6.4798 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8899 -0.5138 29 1 1.9703 2.1169 0.0004 30 1 3.1494 -2.8391 -1.7288 31 1 1.4004 -3.0323 -2.0795 32 1 3.1052 -5.1729 -1.5126 33 1 1.3431 -5.2013 -1.2010 34 1 1.7331 -5.2204 1.0551 35 1 3.4922 -5.2302 0.7436 36 1 2.0102 -2.0909 2.5753 37 1 1.1138 -3.6183 2.3961 38 1 1.9188 -3.3543 4.9542 39 1 3.7149 -5.4937 5.3724 40 1 4.6103 -3.9658 5.5520 41 1 3.7445 -5.0248 10.0511 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320449011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:13 Heat of formation + Delta-G solvation = 31.311646 kcal Electronic energy + Delta-G solvation = -23598.118197 eV Core-core repulsion = 20127.760940 eV Total energy + Delta-G solvation = -3470.357257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.04418 -40.94207 -39.38883 -36.15473 -35.91851 -34.43603 -33.42392 -32.49552 -30.28422 -29.20946 -28.29708 -27.42707 -24.23472 -23.74232 -23.05529 -22.11866 -21.38250 -20.95102 -19.15348 -18.23184 -17.66564 -17.48096 -17.16120 -16.93389 -16.47414 -16.27221 -16.01435 -15.69030 -14.93035 -14.76857 -14.69723 -14.41735 -14.21895 -13.96157 -13.72929 -13.42310 -13.32730 -13.02677 -12.83559 -12.72823 -12.43210 -12.32326 -12.17051 -11.95480 -11.68176 -11.53137 -11.21169 -11.02083 -10.94239 -10.82153 -10.20678 -9.94559 -9.41684 -8.42624 -6.49271 0.86657 1.30352 1.32807 1.45345 1.59493 1.72524 1.94435 2.25365 2.29230 2.92890 2.96027 3.27885 3.59164 3.75830 3.80787 3.91961 3.95060 4.02065 4.15468 4.19720 4.27040 4.42813 4.50581 4.55781 4.72452 4.74863 4.79055 4.89052 4.94080 5.00207 5.05154 5.17237 5.21853 5.23505 5.31321 5.51067 5.82585 5.85201 6.04877 6.08516 6.51070 6.84206 7.14167 7.42486 7.85793 8.72030 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.003643 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.912183 B = 7683.773563 C = 8319.665909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.473 5.473 3 C 0.161 3.839 4 N -0.361 5.361 5 N -0.322 5.322 6 C 0.183 3.817 7 C 0.153 3.847 8 H 0.110 0.890 9 C -0.102 4.102 10 C -0.118 4.118 11 C 0.042 3.958 12 N -0.512 5.512 13 C 0.045 3.955 14 C 0.499 3.501 15 O -0.577 6.577 16 N -0.708 5.708 17 C 0.235 3.765 18 C -0.546 4.546 19 H 0.061 0.939 20 C 0.029 3.971 21 N -0.929 5.929 22 Si 0.935 3.065 23 H -0.269 1.269 24 H -0.269 1.269 25 H -0.262 1.262 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.260 0.740 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.408 0.592 39 H 0.013 0.987 40 H 0.003 0.997 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.818 7.684 -24.526 29.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.164 5.164 3 C -0.128 4.128 4 N -0.200 5.200 5 N -0.161 5.161 6 C -0.087 4.087 7 C 0.043 3.957 8 H 0.127 0.873 9 C -0.141 4.141 10 C -0.157 4.157 11 C -0.086 4.086 12 N -0.237 5.237 13 C -0.086 4.086 14 C 0.285 3.715 15 O -0.457 6.457 16 N -0.359 5.359 17 C 0.111 3.889 18 C -0.584 4.584 19 H 0.079 0.921 20 C -0.171 4.171 21 N -0.568 5.568 22 Si 0.759 3.241 23 H -0.194 1.194 24 H -0.194 1.194 25 H -0.186 1.186 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.126 0.874 29 H 0.276 0.724 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.243 0.757 39 H 0.031 0.969 40 H 0.021 0.979 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.043 7.436 -24.550 28.338 hybrid contribution -1.284 -0.218 0.988 1.634 sum -13.327 7.219 -23.562 28.015 Atomic orbital electron populations 1.22590 0.72185 1.07583 1.05795 1.46481 1.10853 1.05340 1.53685 1.27223 0.86409 0.96566 1.02598 1.74230 1.21138 1.03778 1.20814 1.74254 1.19736 1.03215 1.18942 1.24703 0.87027 0.92621 1.04380 1.21114 0.96815 0.83317 0.94433 0.87282 1.22474 1.02912 0.94490 0.94246 1.22406 1.03796 0.96220 0.93229 1.22853 1.01245 0.87793 0.96677 1.64075 1.51488 1.08499 0.99687 1.22049 0.96210 1.01759 0.88556 1.21166 0.86976 0.80037 0.83299 1.90639 1.28884 1.46546 1.79585 1.45990 1.26882 1.57030 1.06008 1.19044 0.89841 0.92604 0.87438 1.21277 1.09520 1.37452 0.90129 0.92057 1.25550 1.00850 0.96149 0.94588 1.69969 1.41050 1.46445 0.99349 0.85900 0.80069 0.79384 0.78795 1.19408 1.19415 1.18628 0.88774 0.86035 0.87365 0.72384 0.92403 0.87120 0.90695 0.87986 0.92570 0.92436 0.88256 0.88013 0.75692 0.96875 0.97885 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.15 10.87 127.77 1.39 1.53 16 2 N -0.47 -7.01 3.15 -542.08 -1.71 -8.72 16 3 C 0.16 2.90 12.74 180.12 2.30 5.20 16 4 N -0.36 -11.05 12.21 -60.00 -0.73 -11.78 16 5 N -0.32 -10.81 12.21 -50.16 -0.61 -11.42 16 6 C 0.18 4.21 6.58 137.98 0.91 5.12 16 7 C 0.15 2.83 2.62 44.51 0.12 2.95 16 8 H 0.11 1.12 7.10 -2.39 -0.02 1.11 16 9 C -0.10 -1.63 6.49 31.80 0.21 -1.42 16 10 C -0.12 -1.88 6.93 31.47 0.22 -1.66 16 11 C 0.04 1.02 5.76 86.45 0.50 1.51 16 12 N -0.51 -13.96 4.64 -867.10 -4.02 -17.98 16 13 C 0.05 1.22 5.19 85.56 0.44 1.67 16 14 C 0.50 19.59 7.63 87.66 0.67 20.26 16 15 O -0.58 -27.90 15.08 -3.02 -0.05 -27.94 16 16 N -0.71 -29.27 5.55 -466.80 -2.59 -31.86 16 17 C 0.23 11.97 4.50 85.64 0.38 12.35 16 18 C -0.55 -30.72 9.83 25.60 0.25 -30.47 16 19 H 0.06 3.58 7.84 -2.91 -0.02 3.56 16 20 C 0.03 1.68 5.47 84.65 0.46 2.14 16 21 N -0.93 -56.02 13.96 21.45 0.30 -55.72 16 22 Si 0.93 45.38 27.47 68.60 1.88 47.26 16 23 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.26 -12.69 6.54 99.48 0.65 -12.04 16 26 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.12 -0.34 8.14 -2.39 -0.02 -0.35 16 28 H 0.11 -0.09 7.42 -2.39 -0.02 -0.11 16 29 H 0.26 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.06 1.28 8.05 -2.38 -0.02 1.26 16 31 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.21 7.57 -2.39 -0.02 1.19 16 35 H 0.06 1.86 7.39 -2.39 -0.02 1.85 16 36 H 0.10 2.55 7.82 -2.39 -0.02 2.53 16 37 H 0.10 1.93 7.82 -2.38 -0.02 1.91 16 38 H 0.41 14.43 8.32 -92.71 -0.77 13.66 16 39 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 40 H 0.00 0.18 7.57 -2.38 -0.02 0.16 16 41 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -88.37 340.80 0.53 -87.83 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.22 Total: 11.15 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.84 Total: 19.18 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -9.36 Total: -137.49 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.94 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.26 kcal Total: -88.37 0.53 -87.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320449011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.144 kcal (2) G-P(sol) polarization free energy of solvation -88.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds