Wall clock time and date at job start Fri Apr 10 2020 17:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46493 * 109.47507 * 2 1 4 4 C 1.34819 * 126.59742 * 124.99724 * 3 2 1 5 5 C 1.36596 * 106.84169 * 180.02562 * 4 3 2 6 6 C 1.47520 * 125.77284 * 179.97438 * 5 4 3 7 7 O 1.21593 * 120.00133 * 353.28388 * 6 5 4 8 8 N 1.34777 * 120.00055 * 173.27963 * 6 5 4 9 9 C 1.47077 * 120.88327 * 183.47212 * 8 6 5 10 10 C 1.53692 * 108.27758 * 128.75748 * 9 8 6 11 11 N 1.46896 * 109.25860 * 54.08749 * 10 9 8 12 12 C 1.46892 * 111.00525 * 172.61014 * 11 10 9 13 13 C 1.50702 * 109.47067 * 294.30065 * 12 11 10 14 14 H 1.08003 * 119.99926 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00427 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99984 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00366 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46941 * 89.99855 * 17 15 13 19 19 H 1.48494 * 109.47175 * 209.99998 * 17 15 13 20 20 H 1.48496 * 109.46993 * 330.00285 * 17 15 13 21 21 C 1.46903 * 111.26422 * 296.75647 * 11 10 9 22 22 C 1.47082 * 120.88357 * 3.75946 * 8 6 5 23 23 N 1.34403 * 108.45893 * 359.97438 * 5 4 3 24 24 N 1.28760 * 109.52276 * 0.02562 * 23 5 4 25 25 H 1.08999 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47384 * 300.00452 * 1 2 3 27 27 H 1.09005 * 109.47045 * 60.00303 * 1 2 3 28 28 H 1.09003 * 109.47384 * 239.99548 * 2 1 3 29 29 H 1.09005 * 109.47045 * 119.99697 * 2 1 3 30 30 H 1.07995 * 126.57929 * 359.97438 * 4 3 2 31 31 H 1.08998 * 109.63687 * 248.53093 * 9 8 6 32 32 H 1.09003 * 109.62505 * 9.10927 * 9 8 6 33 33 H 1.09003 * 109.64944 * 294.08031 * 10 9 8 34 34 H 1.09007 * 109.42599 * 173.95241 * 10 9 8 35 35 H 1.09000 * 109.47350 * 54.29586 * 12 11 10 36 36 H 1.08998 * 109.47712 * 174.29826 * 12 11 10 37 37 H 0.96997 * 120.00408 * 180.02562 * 16 15 13 38 38 H 1.08992 * 109.49818 * 303.14158 * 21 11 10 39 39 H 1.09006 * 109.51100 * 183.07519 * 21 11 10 40 40 H 1.09002 * 109.62697 * 350.89146 * 22 8 6 41 41 H 1.08995 * 109.63258 * 111.46914 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8716 1.9319 0.8867 5 6 3.0501 3.2324 0.5088 6 6 3.9064 4.2195 1.1932 7 8 4.4332 3.9370 2.2520 8 7 4.1050 5.4346 0.6448 9 6 5.0146 6.4060 1.2711 10 6 5.9970 6.9063 0.2002 11 7 5.2404 7.4172 -0.9506 12 6 6.1324 8.0646 -1.9216 13 6 6.7364 9.2993 -1.3036 14 1 6.4826 9.5756 -0.2908 15 6 7.6130 10.0762 -2.0309 16 7 7.9217 9.7400 -3.2644 17 14 8.3611 11.6069 -1.2651 18 1 9.6317 11.2495 -0.5847 19 1 8.6329 12.6092 -2.3265 20 1 7.4134 12.1788 -0.2752 21 6 4.4542 6.3519 -1.5868 22 6 3.4131 5.8266 -0.5925 23 7 2.3135 3.4606 -0.5921 24 7 1.6882 2.3845 -0.9220 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.3260 1.4397 1.7337 31 1 4.4401 7.2441 1.6655 32 1 5.5655 5.9238 2.0786 33 1 6.6380 6.0853 -0.1213 34 1 6.6104 7.7056 0.6161 35 1 6.9269 7.3732 -2.2025 36 1 5.5632 8.3435 -2.8083 37 1 8.5386 10.2863 -3.7760 38 1 5.1165 5.5387 -1.8835 39 1 3.9485 6.7488 -2.4671 40 1 2.9047 4.9613 -1.0176 41 1 2.6876 6.6101 -0.3738 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333485849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:25 Heat of formation + Delta-G solvation = 87.526816 kcal Electronic energy + Delta-G solvation = -23445.872710 eV Core-core repulsion = 19977.953126 eV Total energy + Delta-G solvation = -3467.919584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.45232 -39.60183 -37.37830 -35.82308 -34.30503 -32.35267 -31.63370 -31.18295 -30.06547 -28.14746 -25.56404 -25.12222 -23.83359 -22.81073 -22.10339 -21.67350 -20.51615 -19.03812 -17.58330 -16.56038 -16.41479 -16.32862 -15.88502 -15.14109 -15.01110 -14.68156 -14.54323 -14.25351 -13.84856 -13.64776 -13.55078 -13.26756 -12.86093 -12.79585 -12.50522 -12.35899 -12.01004 -11.80103 -11.38687 -11.15964 -10.81362 -10.74338 -10.66724 -10.61983 -10.47471 -10.31707 -9.91915 -9.61740 -9.47008 -9.16193 -8.44170 -8.33507 -7.21988 -6.00763 -4.02304 0.92955 1.59360 1.74247 3.12332 3.32686 3.33863 3.40030 3.44537 3.91012 4.01546 4.29367 4.43584 4.47783 4.56231 4.74499 4.92277 4.93722 5.00640 5.20289 5.32083 5.35803 5.52198 5.55081 5.63248 5.78056 5.86142 5.95993 6.06741 6.08973 6.39727 6.48222 6.55922 6.62847 6.83919 7.31457 7.36044 7.56104 7.78960 7.82046 8.09849 8.20538 8.26299 8.55978 9.05236 9.61976 11.10115 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.037806 B = 0.003047 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.447481 B = 9185.931580 C = 9666.393309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.360 5.360 4 C 0.090 3.910 5 C -0.090 4.090 6 C 0.598 3.402 7 O -0.552 6.552 8 N -0.588 5.588 9 C 0.115 3.885 10 C 0.052 3.948 11 N -0.537 5.537 12 C 0.193 3.807 13 C -0.508 4.508 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.044 3.956 22 C 0.078 3.922 23 N -0.202 5.202 24 N -0.065 5.065 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.204 0.796 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.024 0.976 34 H 0.097 0.903 35 H -0.010 1.010 36 H 0.032 0.968 37 H 0.261 0.739 38 H 0.023 0.977 39 H 0.080 0.920 40 H 0.135 0.865 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 -20.947 7.495 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.146 5.146 4 C -0.066 4.066 5 C -0.229 4.229 6 C 0.384 3.616 7 O -0.430 6.430 8 N -0.319 5.319 9 C -0.007 4.007 10 C -0.077 4.077 11 N -0.262 5.262 12 C 0.068 3.932 13 C -0.546 4.546 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.086 4.086 22 C -0.046 4.046 23 N -0.075 5.075 24 N -0.045 5.045 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.221 0.779 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.042 0.958 34 H 0.115 0.885 35 H 0.008 0.992 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.099 0.901 40 H 0.152 0.848 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.350 -20.389 6.801 25.844 hybrid contribution 1.614 -0.062 0.692 1.757 sum -12.736 -20.451 7.493 25.230 Atomic orbital electron populations 1.22090 0.92704 1.03675 1.04125 1.22042 0.96900 0.76230 1.05143 1.50589 1.31702 1.12270 1.20085 1.23345 0.93286 0.94016 0.95989 1.21537 1.07430 0.95164 0.98768 1.16813 0.79951 0.80946 0.83888 1.90769 1.51545 1.78659 1.22019 1.48046 1.44149 1.13358 1.26310 1.22025 0.91751 0.90917 0.96042 1.22410 0.94296 0.98734 0.92250 1.62094 1.27768 1.26396 1.09959 1.19718 0.89701 0.93273 0.90467 1.21162 1.24957 1.08311 1.00182 0.91789 1.24997 0.96673 0.98095 0.94879 1.69960 1.35274 1.39285 1.09319 0.86496 0.79415 0.82665 0.78843 1.20759 1.21298 1.19730 1.22380 0.95887 0.93597 0.96728 1.22953 0.94960 1.03007 0.83658 1.74258 1.05597 1.17289 1.10336 1.81998 1.20026 0.90490 1.11959 0.89901 0.91681 0.90620 0.88288 0.87692 0.77899 0.90656 0.89357 0.95798 0.88506 0.99207 0.95037 0.92936 0.95862 0.90148 0.84812 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.12 37.15 0.38 -0.26 16 2 C 0.12 0.47 7.26 -4.05 -0.03 0.44 16 3 N -0.36 -3.15 3.69 -61.07 -0.23 -3.38 16 4 C 0.09 0.88 11.28 -16.83 -0.19 0.69 16 5 C -0.09 -1.22 6.77 -83.55 -0.57 -1.79 16 6 C 0.60 9.70 7.70 -12.48 -0.10 9.60 16 7 O -0.55 -9.81 16.34 5.28 0.09 -9.73 16 8 N -0.59 -9.92 3.00 -173.42 -0.52 -10.44 16 9 C 0.11 1.98 6.62 -3.37 -0.02 1.96 16 10 C 0.05 1.05 5.47 -3.47 -0.02 1.03 16 11 N -0.54 -11.82 4.62 -235.47 -1.09 -12.91 16 12 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 13 C -0.51 -14.27 8.41 -34.44 -0.29 -14.56 16 14 H 0.06 1.77 7.13 -52.48 -0.37 1.39 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 17 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.04 0.82 5.62 -3.70 -0.02 0.80 16 22 C 0.08 1.27 6.44 -3.60 -0.02 1.25 16 23 N -0.20 -2.83 8.66 32.85 0.28 -2.55 16 24 N -0.07 -0.80 13.65 60.35 0.82 0.02 16 25 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.13 8.08 -51.93 -0.42 -0.29 16 30 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.47 7.08 -51.93 -0.37 1.10 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 35 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 36 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 1.48 7.99 -51.93 -0.41 1.06 16 40 H 0.14 2.08 3.74 -118.62 -0.44 1.64 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -34.16 338.26 -6.97 -41.13 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -6.14 Total: -3.48 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -1.00 Total: 5.70 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.01 Total: -55.44 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.16 -6.97 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333485849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.660 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds