Wall clock time and date at job start Fri Apr 10 2020 17:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46493 * 109.47507 * 2 1 4 4 C 1.34819 * 126.59742 * 124.99724 * 3 2 1 5 5 C 1.36596 * 106.84169 * 180.02562 * 4 3 2 6 6 C 1.47520 * 125.77284 * 179.97438 * 5 4 3 7 7 O 1.21593 * 120.00133 * 353.28388 * 6 5 4 8 8 N 1.34777 * 120.00055 * 173.27963 * 6 5 4 9 9 C 1.47077 * 120.88327 * 183.47212 * 8 6 5 10 10 C 1.53692 * 108.27758 * 128.75748 * 9 8 6 11 11 N 1.46896 * 109.25860 * 54.08749 * 10 9 8 12 12 C 1.46892 * 111.00525 * 172.61014 * 11 10 9 13 13 C 1.50702 * 109.47067 * 294.30065 * 12 11 10 14 14 H 1.08003 * 119.99926 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00427 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99984 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00366 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46941 * 89.99855 * 17 15 13 19 19 H 1.48494 * 109.47175 * 209.99998 * 17 15 13 20 20 H 1.48496 * 109.46993 * 330.00285 * 17 15 13 21 21 C 1.46903 * 111.26422 * 296.75647 * 11 10 9 22 22 C 1.47082 * 120.88357 * 3.75946 * 8 6 5 23 23 N 1.34403 * 108.45893 * 359.97438 * 5 4 3 24 24 N 1.28760 * 109.52276 * 0.02562 * 23 5 4 25 25 H 1.08999 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47384 * 300.00452 * 1 2 3 27 27 H 1.09005 * 109.47045 * 60.00303 * 1 2 3 28 28 H 1.09003 * 109.47384 * 239.99548 * 2 1 3 29 29 H 1.09005 * 109.47045 * 119.99697 * 2 1 3 30 30 H 1.07995 * 126.57929 * 359.97438 * 4 3 2 31 31 H 1.08998 * 109.63687 * 248.53093 * 9 8 6 32 32 H 1.09003 * 109.62505 * 9.10927 * 9 8 6 33 33 H 1.09003 * 109.64944 * 294.08031 * 10 9 8 34 34 H 1.09007 * 109.42599 * 173.95241 * 10 9 8 35 35 H 1.09000 * 109.47350 * 54.29586 * 12 11 10 36 36 H 1.08998 * 109.47712 * 174.29826 * 12 11 10 37 37 H 0.96997 * 120.00408 * 180.02562 * 16 15 13 38 38 H 1.08992 * 109.49818 * 303.14158 * 21 11 10 39 39 H 1.09006 * 109.51100 * 183.07519 * 21 11 10 40 40 H 1.09002 * 109.62697 * 350.89146 * 22 8 6 41 41 H 1.08995 * 109.63258 * 111.46914 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8716 1.9319 0.8867 5 6 3.0501 3.2324 0.5088 6 6 3.9064 4.2195 1.1932 7 8 4.4332 3.9370 2.2520 8 7 4.1050 5.4346 0.6448 9 6 5.0146 6.4060 1.2711 10 6 5.9970 6.9063 0.2002 11 7 5.2404 7.4172 -0.9506 12 6 6.1324 8.0646 -1.9216 13 6 6.7364 9.2993 -1.3036 14 1 6.4826 9.5756 -0.2908 15 6 7.6130 10.0762 -2.0309 16 7 7.9217 9.7400 -3.2644 17 14 8.3611 11.6069 -1.2651 18 1 9.6317 11.2495 -0.5847 19 1 8.6329 12.6092 -2.3265 20 1 7.4134 12.1788 -0.2752 21 6 4.4542 6.3519 -1.5868 22 6 3.4131 5.8266 -0.5925 23 7 2.3135 3.4606 -0.5921 24 7 1.6882 2.3845 -0.9220 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.3260 1.4397 1.7337 31 1 4.4401 7.2441 1.6655 32 1 5.5655 5.9238 2.0786 33 1 6.6380 6.0853 -0.1213 34 1 6.6104 7.7056 0.6161 35 1 6.9269 7.3732 -2.2025 36 1 5.5632 8.3435 -2.8083 37 1 8.5386 10.2863 -3.7760 38 1 5.1165 5.5387 -1.8835 39 1 3.9485 6.7488 -2.4671 40 1 2.9047 4.9613 -1.0176 41 1 2.6876 6.6101 -0.3738 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333485849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:24 Heat of formation + Delta-G solvation = 62.471809 kcal Electronic energy + Delta-G solvation = -23446.959177 eV Core-core repulsion = 19977.953126 eV Total energy + Delta-G solvation = -3469.006051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.32482 -40.93240 -38.92371 -36.51187 -35.89448 -34.38129 -32.53071 -32.26113 -31.16355 -29.91639 -27.34515 -25.76786 -25.14327 -24.22239 -23.53561 -22.70437 -21.88025 -20.29150 -18.67249 -18.40061 -17.59902 -17.27289 -17.05060 -16.65397 -16.16962 -16.08363 -15.79048 -15.36975 -15.33153 -15.21205 -14.92044 -14.29727 -14.06301 -13.90518 -13.62421 -13.34632 -13.19173 -12.99966 -12.75845 -12.69023 -12.57749 -12.33780 -12.23381 -12.19422 -11.83436 -11.53665 -11.36198 -11.33916 -10.85664 -10.61201 -10.39458 -9.76190 -9.05997 -8.20133 -6.30518 0.14816 0.54657 1.11763 1.42668 1.44124 1.55959 1.89294 2.16648 2.41293 3.01420 3.12387 3.29186 3.35504 3.70526 3.93917 3.99422 4.01750 4.06115 4.23901 4.27021 4.29543 4.38867 4.41534 4.45520 4.64198 4.76809 4.85062 4.89991 4.93276 5.01286 5.13188 5.20532 5.23163 5.28515 5.47308 5.56243 5.64642 6.02813 6.19805 6.35763 6.57327 6.80061 6.85097 7.05656 7.39251 8.91307 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.037806 B = 0.003047 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.447481 B = 9185.931580 C = 9666.393309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.345 5.345 4 C 0.115 3.885 5 C -0.124 4.124 6 C 0.601 3.399 7 O -0.570 6.570 8 N -0.598 5.598 9 C 0.126 3.874 10 C 0.056 3.944 11 N -0.540 5.540 12 C 0.209 3.791 13 C -0.523 4.523 14 H 0.067 0.933 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.972 3.028 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.044 3.956 22 C 0.091 3.909 23 N -0.227 5.227 24 N -0.084 5.084 25 H 0.109 0.891 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.240 0.760 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.011 0.989 34 H 0.085 0.915 35 H -0.042 1.042 36 H 0.007 0.993 37 H 0.264 0.736 38 H 0.013 0.987 39 H 0.082 0.918 40 H 0.150 0.850 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 -22.506 9.220 28.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.131 5.131 4 C -0.043 4.043 5 C -0.263 4.263 6 C 0.388 3.612 7 O -0.449 6.449 8 N -0.328 5.328 9 C 0.004 3.996 10 C -0.073 4.073 11 N -0.265 5.265 12 C 0.082 3.918 13 C -0.561 4.561 14 H 0.085 0.915 15 C -0.198 4.198 16 N -0.577 5.577 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.187 1.187 21 C -0.085 4.085 22 C -0.032 4.032 23 N -0.099 5.099 24 N -0.064 5.064 25 H 0.128 0.872 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.161 0.839 30 H 0.257 0.743 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.029 0.971 34 H 0.103 0.897 35 H -0.024 1.024 36 H 0.025 0.975 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.100 0.900 40 H 0.166 0.834 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.207 -21.991 8.523 28.063 hybrid contribution 1.800 0.224 0.143 1.820 sum -13.407 -21.768 8.666 26.994 Atomic orbital electron populations 1.22085 0.92557 1.04983 1.02694 1.22610 0.97039 0.73814 1.07792 1.50953 1.30405 1.13164 1.18534 1.23831 0.91869 0.92618 0.95998 1.21384 1.08827 0.96250 0.99837 1.17092 0.79701 0.80752 0.83633 1.90745 1.52450 1.78923 1.22812 1.48095 1.44352 1.13882 1.26501 1.21847 0.91399 0.91482 0.94917 1.22375 0.94837 0.97827 0.92217 1.62042 1.26917 1.27967 1.09572 1.19378 0.88993 0.92766 0.90620 1.21462 1.25308 1.08908 1.00409 0.91478 1.25947 0.97030 1.01514 0.95275 1.70094 1.35966 1.40771 1.10824 0.85344 0.78700 0.78286 0.78064 1.19828 1.20843 1.18701 1.22457 0.95939 0.92378 0.97716 1.22886 0.93779 1.03612 0.82949 1.74077 1.06330 1.18569 1.10937 1.81909 1.20399 0.90982 1.13111 0.87222 0.92473 0.92660 0.86835 0.83858 0.74341 0.89874 0.88447 0.97057 0.89672 1.02435 0.97450 0.92688 0.96854 0.89954 0.83407 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.12 71.98 0.73 -0.08 16 2 C 0.11 0.46 7.26 86.38 0.63 1.08 16 3 N -0.34 -5.11 3.69 -347.12 -1.28 -6.39 16 4 C 0.11 1.91 11.28 83.85 0.95 2.85 16 5 C -0.12 -3.19 6.77 40.82 0.28 -2.92 16 6 C 0.60 18.89 7.70 86.69 0.67 19.56 16 7 O -0.57 -19.49 16.34 -4.01 -0.07 -19.56 16 8 N -0.60 -19.93 3.00 -820.83 -2.46 -22.39 16 9 C 0.13 4.31 6.62 86.50 0.57 4.88 16 10 C 0.06 2.32 5.47 86.54 0.47 2.79 16 11 N -0.54 -24.50 4.62 -898.90 -4.15 -28.65 16 12 C 0.21 11.49 4.72 85.56 0.40 11.90 16 13 C -0.52 -30.02 8.41 25.60 0.22 -29.80 16 14 H 0.07 3.74 7.13 -2.91 -0.02 3.72 16 15 C 0.00 0.01 5.46 84.65 0.46 0.47 16 16 N -0.94 -57.29 13.29 21.45 0.28 -57.01 16 17 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 21 C 0.04 1.72 5.62 86.38 0.49 2.20 16 22 C 0.09 2.98 6.44 86.35 0.56 3.54 16 23 N -0.23 -6.19 8.66 -50.00 -0.43 -6.62 16 24 N -0.08 -1.97 13.65 37.02 0.51 -1.46 16 25 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.14 -0.39 8.08 -2.38 -0.02 -0.41 16 30 H 0.24 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.10 3.17 7.08 -2.39 -0.02 3.15 16 33 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 3.67 6.67 -2.38 -0.02 3.65 16 35 H -0.04 -2.54 8.12 -2.39 -0.02 -2.56 16 36 H 0.01 0.44 7.97 -2.39 -0.02 0.42 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 3.13 7.99 -2.38 -0.02 3.11 16 40 H 0.15 4.59 3.74 -88.68 -0.33 4.26 16 41 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -75.82 338.26 1.54 -74.28 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 0.71 Total: 4.53 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 6.41 Total: 16.49 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -7.54 Total: -122.52 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.07 Total: -19.56 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.82 1.54 -74.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333485849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.750 kcal (2) G-P(sol) polarization free energy of solvation -75.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds