Wall clock time and date at job start Fri Apr 10 2020 17:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.99809 * 2 1 4 4 C 1.54330 * 109.88173 * 121.09545 * 2 1 3 5 5 C 1.55157 * 102.94049 * 141.61149 * 4 2 1 6 6 H 1.09003 * 111.00560 * 82.60874 * 5 4 2 7 7 N 1.46904 * 110.99988 * 206.42043 * 5 4 2 8 8 C 1.54901 * 101.58260 * 324.49554 * 5 4 2 9 9 N 1.47019 * 109.88263 * 238.90037 * 2 1 3 10 10 C 1.34783 * 125.64644 * 61.67717 * 9 2 1 11 11 O 1.21593 * 119.99923 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00026 * 179.97438 * 10 9 2 13 13 C 1.40189 * 120.00255 * 180.02562 * 12 10 9 14 14 C 1.40405 * 125.97187 * 359.71934 * 13 12 10 15 15 C 1.35246 * 107.86713 * 179.82639 * 14 13 12 16 16 N 1.34957 * 107.85603 * 0.43193 * 15 14 13 17 17 C 1.46507 * 125.97205 * 179.74766 * 16 15 14 18 18 C 1.50706 * 109.46829 * 125.00083 * 17 16 15 19 19 H 1.07994 * 120.00323 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99692 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00028 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00079 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47478 * 89.99097 * 22 20 18 24 24 H 1.48501 * 109.47151 * 209.99687 * 22 20 18 25 25 H 1.48500 * 109.46624 * 329.99426 * 22 20 18 26 26 N 1.31202 * 125.97465 * 180.02562 * 13 12 10 27 27 H 1.09005 * 109.46988 * 298.90375 * 1 2 3 28 28 H 1.08996 * 109.46838 * 58.90810 * 1 2 3 29 29 H 1.08997 * 109.46688 * 178.90520 * 1 2 3 30 30 H 1.08996 * 110.71860 * 23.24203 * 4 2 1 31 31 H 1.09002 * 110.71679 * 259.97202 * 4 2 1 32 32 H 1.00901 * 110.99519 * 179.97438 * 7 5 4 33 33 H 1.00898 * 111.00020 * 303.95570 * 7 5 4 34 34 H 1.09004 * 110.36831 * 155.84850 * 8 5 4 35 35 H 1.09000 * 110.36793 * 278.06248 * 8 5 4 36 36 H 0.97008 * 119.99811 * 0.02562 * 12 10 9 37 37 H 1.08008 * 126.06105 * 0.02562 * 14 13 12 38 38 H 1.07998 * 126.06839 * 180.17636 * 15 14 13 39 39 H 1.09000 * 109.47200 * 244.99500 * 17 16 15 40 40 H 1.08995 * 109.46787 * 5.00182 * 17 16 15 41 41 H 0.97003 * 119.99837 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 1.2428 5 6 3.2877 -1.5142 0.6924 6 1 4.1656 -0.8690 0.6610 7 7 3.5539 -2.7228 1.4839 8 6 2.8146 -1.8794 -0.7366 9 7 2.0300 -0.7141 -1.1838 10 6 1.8085 -0.3614 -2.4657 11 8 1.1434 0.6246 -2.7187 12 7 2.3242 -1.1014 -3.4670 13 6 2.0943 -0.7343 -4.8003 14 6 1.3447 0.3710 -5.2338 15 6 1.3643 0.3809 -6.5861 16 7 2.0888 -0.6808 -6.9973 17 6 2.3595 -1.0511 -8.3888 18 6 3.8475 -1.1684 -8.5970 19 1 4.5239 -0.9852 -7.7753 20 6 4.3453 -1.5088 -9.8368 21 7 3.5217 -1.7315 -10.8376 22 14 6.1897 -1.6536 -10.0952 23 1 6.6211 -3.0466 -9.8147 24 1 6.5215 -1.3061 -11.5003 25 1 6.8928 -0.7232 -9.1758 26 7 2.5372 -1.3665 -5.8612 27 1 -0.3633 0.4967 0.8997 28 1 -0.3633 0.5307 -0.8800 29 1 -0.3632 -1.0275 -0.0196 30 1 1.3051 -1.4459 1.6183 31 1 2.3530 -0.0459 2.0201 32 1 4.3554 -3.2203 1.1257 33 1 3.6748 -2.4966 2.4598 34 1 3.6717 -2.0338 -1.3922 35 1 2.1903 -2.7726 -0.7129 36 1 2.8546 -1.8882 -3.2652 37 1 0.8443 1.0879 -4.5998 38 1 0.8820 1.1071 -7.2237 39 1 1.8853 -2.0075 -8.6091 40 1 1.9590 -0.2853 -9.0529 41 1 3.8719 -1.9713 -11.7099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351973725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:51 Heat of formation + Delta-G solvation = 63.130713 kcal Electronic energy + Delta-G solvation = -23181.117711 eV Core-core repulsion = 19712.140232 eV Total energy + Delta-G solvation = -3468.977478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85844 -40.01313 -38.06416 -34.78345 -34.12997 -33.38123 -31.93935 -30.57115 -29.22980 -28.94676 -26.62909 -26.10010 -23.53857 -22.47648 -21.21958 -20.82120 -19.95016 -19.16315 -17.89768 -17.02045 -16.56404 -16.39469 -15.81672 -15.43678 -15.27651 -14.90216 -14.27719 -14.01136 -13.95790 -13.77733 -13.60739 -13.08799 -12.77820 -12.59934 -12.28306 -12.19762 -12.12008 -11.74268 -11.46259 -11.32750 -11.14368 -10.99517 -10.87640 -10.37759 -10.23954 -10.01700 -9.62789 -9.46254 -9.27033 -8.81979 -8.61332 -8.06059 -7.37223 -6.22442 -4.27362 2.29360 2.69530 3.13916 3.24675 3.30296 3.34728 3.42309 3.85399 3.94636 4.05105 4.24077 4.31298 4.37600 4.67331 4.85785 5.03090 5.12622 5.15378 5.26198 5.39715 5.45701 5.49973 5.55183 5.63852 5.84547 5.89587 6.03029 6.19720 6.37701 6.57758 6.61840 6.72807 6.85481 6.91021 7.04055 7.14346 7.53309 7.71727 7.83902 7.98367 8.10095 8.62319 8.69769 8.83307 9.38103 10.86253 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.003172 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.864798 B = 8824.965460 C = 9758.896333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.157 3.843 3 H 0.076 0.924 4 C -0.123 4.123 5 C 0.075 3.925 6 H 0.055 0.945 7 N -0.839 5.839 8 C 0.103 3.897 9 N -0.631 5.631 10 C 0.733 3.267 11 O -0.562 6.562 12 N -0.642 5.642 13 C 0.276 3.724 14 C -0.286 4.286 15 C 0.051 3.949 16 N -0.321 5.321 17 C 0.259 3.741 18 C -0.527 4.527 19 H 0.069 0.931 20 C 0.062 3.938 21 N -0.896 5.896 22 Si 0.908 3.092 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 N -0.308 5.308 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.346 0.654 33 H 0.347 0.653 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.405 0.595 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 0.963 24.286 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.053 3.947 3 H 0.094 0.906 4 C -0.162 4.162 5 C -0.037 4.037 6 H 0.073 0.927 7 N -0.370 5.370 8 C -0.021 4.021 9 N -0.371 5.371 10 C 0.434 3.566 11 O -0.437 6.437 12 N -0.292 5.292 13 C 0.022 3.978 14 C -0.317 4.317 15 C -0.099 4.099 16 N -0.103 5.103 17 C 0.141 3.859 18 C -0.566 4.566 19 H 0.087 0.913 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.735 3.265 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 N -0.139 5.139 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.240 0.760 37 H 0.178 0.822 38 H 0.185 0.815 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.745 0.417 23.013 23.180 hybrid contribution 1.810 0.497 0.275 1.897 sum -0.935 0.914 23.289 23.325 Atomic orbital electron populations 1.22170 0.94469 1.02489 1.03062 1.21358 0.94865 0.95890 0.82538 0.90562 1.22834 0.97553 0.99189 0.96581 1.22433 0.97098 0.91063 0.93090 0.92667 1.58553 1.47873 1.23854 1.06769 1.22264 0.95563 0.89586 0.94643 1.47496 1.56132 1.29897 1.03576 1.15065 0.80100 0.82548 0.78844 1.90854 1.43615 1.27699 1.81569 1.41417 1.55371 1.30539 1.01879 1.18785 0.99580 0.95966 0.83474 1.21509 1.12661 1.04042 0.93522 1.22547 0.98283 0.93555 0.95511 1.49049 1.36228 1.18314 1.06678 1.19729 0.98424 0.97711 0.70013 1.21267 0.90655 1.48240 0.96429 0.91323 1.24946 0.98968 0.94735 0.95458 1.69921 1.34836 1.46792 1.01867 0.86329 0.84195 0.78641 0.77334 1.20354 1.20993 1.19741 1.77317 1.24781 1.21267 0.90566 0.91826 0.90668 0.92460 0.89210 0.90126 0.84082 0.83979 0.91002 0.90144 0.75966 0.82202 0.81531 0.93761 0.92541 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.10 37.16 0.34 -1.26 16 2 C 0.16 1.51 3.46 -66.95 -0.23 1.28 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -0.81 6.14 -24.89 -0.15 -0.96 16 5 C 0.08 0.50 4.19 -65.57 -0.27 0.23 16 6 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 7 N -0.84 -4.41 9.38 -2.85 -0.03 -4.43 16 8 C 0.10 0.91 6.27 -2.53 -0.02 0.90 16 9 N -0.63 -7.39 3.06 -168.69 -0.52 -7.91 16 10 C 0.73 11.69 8.25 -86.92 -0.72 10.97 16 11 O -0.56 -10.52 12.52 5.28 0.07 -10.46 16 12 N -0.64 -10.76 5.41 -15.51 -0.08 -10.85 16 13 C 0.28 5.78 8.11 -154.37 -1.25 4.52 16 14 C -0.29 -5.89 9.61 -39.83 -0.38 -6.27 16 15 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 16 N -0.32 -7.63 3.67 -62.56 -0.23 -7.86 16 17 C 0.26 6.67 6.26 -5.19 -0.03 6.64 16 18 C -0.53 -14.84 9.24 -34.44 -0.32 -15.16 16 19 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.90 -25.55 13.29 55.43 0.74 -24.81 16 22 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 N -0.31 -7.28 12.42 31.44 0.39 -6.89 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.95 6.90 -51.93 -0.36 0.59 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.60 7.85 -51.93 -0.41 0.19 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.35 1.48 9.08 -39.29 -0.36 1.12 16 33 H 0.35 1.28 9.03 -39.29 -0.35 0.93 16 34 H 0.07 0.60 7.30 -51.93 -0.38 0.22 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.41 5.76 7.30 -40.82 -0.30 5.46 16 37 H 0.16 3.23 5.91 -52.48 -0.31 2.92 16 38 H 0.17 2.80 8.06 -52.49 -0.42 2.37 16 39 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 41 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -33.08 340.73 -8.69 -41.77 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.81 Total: 6.47 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -3.33 Total: 3.35 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.27 Total: -62.75 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.08 -8.69 -41.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351973725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.905 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds