Wall clock time and date at job start Fri Apr 10 2020 17:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.99809 * 2 1 4 4 C 1.54330 * 109.88173 * 121.09545 * 2 1 3 5 5 C 1.55157 * 102.94049 * 141.61149 * 4 2 1 6 6 H 1.09003 * 111.00560 * 82.60874 * 5 4 2 7 7 N 1.46904 * 110.99988 * 206.42043 * 5 4 2 8 8 C 1.54901 * 101.58260 * 324.49554 * 5 4 2 9 9 N 1.47019 * 109.88263 * 238.90037 * 2 1 3 10 10 C 1.34783 * 125.64644 * 61.67717 * 9 2 1 11 11 O 1.21593 * 119.99923 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00026 * 179.97438 * 10 9 2 13 13 C 1.40189 * 120.00255 * 180.02562 * 12 10 9 14 14 C 1.40405 * 125.97187 * 359.71934 * 13 12 10 15 15 C 1.35246 * 107.86713 * 179.82639 * 14 13 12 16 16 N 1.34957 * 107.85603 * 0.43193 * 15 14 13 17 17 C 1.46507 * 125.97205 * 179.74766 * 16 15 14 18 18 C 1.50706 * 109.46829 * 125.00083 * 17 16 15 19 19 H 1.07994 * 120.00323 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99692 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00028 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00079 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47478 * 89.99097 * 22 20 18 24 24 H 1.48501 * 109.47151 * 209.99687 * 22 20 18 25 25 H 1.48500 * 109.46624 * 329.99426 * 22 20 18 26 26 N 1.31202 * 125.97465 * 180.02562 * 13 12 10 27 27 H 1.09005 * 109.46988 * 298.90375 * 1 2 3 28 28 H 1.08996 * 109.46838 * 58.90810 * 1 2 3 29 29 H 1.08997 * 109.46688 * 178.90520 * 1 2 3 30 30 H 1.08996 * 110.71860 * 23.24203 * 4 2 1 31 31 H 1.09002 * 110.71679 * 259.97202 * 4 2 1 32 32 H 1.00901 * 110.99519 * 179.97438 * 7 5 4 33 33 H 1.00898 * 111.00020 * 303.95570 * 7 5 4 34 34 H 1.09004 * 110.36831 * 155.84850 * 8 5 4 35 35 H 1.09000 * 110.36793 * 278.06248 * 8 5 4 36 36 H 0.97008 * 119.99811 * 0.02562 * 12 10 9 37 37 H 1.08008 * 126.06105 * 0.02562 * 14 13 12 38 38 H 1.07998 * 126.06839 * 180.17636 * 15 14 13 39 39 H 1.09000 * 109.47200 * 244.99500 * 17 16 15 40 40 H 1.08995 * 109.46787 * 5.00182 * 17 16 15 41 41 H 0.97003 * 119.99837 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 1.2428 5 6 3.2877 -1.5142 0.6924 6 1 4.1656 -0.8690 0.6610 7 7 3.5539 -2.7228 1.4839 8 6 2.8146 -1.8794 -0.7366 9 7 2.0300 -0.7141 -1.1838 10 6 1.8085 -0.3614 -2.4657 11 8 1.1434 0.6246 -2.7187 12 7 2.3242 -1.1014 -3.4670 13 6 2.0943 -0.7343 -4.8003 14 6 1.3447 0.3710 -5.2338 15 6 1.3643 0.3809 -6.5861 16 7 2.0888 -0.6808 -6.9973 17 6 2.3595 -1.0511 -8.3888 18 6 3.8475 -1.1684 -8.5970 19 1 4.5239 -0.9852 -7.7753 20 6 4.3453 -1.5088 -9.8368 21 7 3.5217 -1.7315 -10.8376 22 14 6.1897 -1.6536 -10.0952 23 1 6.6211 -3.0466 -9.8147 24 1 6.5215 -1.3061 -11.5003 25 1 6.8928 -0.7232 -9.1758 26 7 2.5372 -1.3665 -5.8612 27 1 -0.3633 0.4967 0.8997 28 1 -0.3633 0.5307 -0.8800 29 1 -0.3632 -1.0275 -0.0196 30 1 1.3051 -1.4459 1.6183 31 1 2.3530 -0.0459 2.0201 32 1 4.3554 -3.2203 1.1257 33 1 3.6748 -2.4966 2.4598 34 1 3.6717 -2.0338 -1.3922 35 1 2.1903 -2.7726 -0.7129 36 1 2.8546 -1.8882 -3.2652 37 1 0.8443 1.0879 -4.5998 38 1 0.8820 1.1071 -7.2237 39 1 1.8853 -2.0075 -8.6091 40 1 1.9590 -0.2853 -9.0529 41 1 3.8719 -1.9713 -11.7099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351973725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:50 Heat of formation + Delta-G solvation = 39.627307 kcal Electronic energy + Delta-G solvation = -23182.136895 eV Core-core repulsion = 19712.140232 eV Total energy + Delta-G solvation = -3469.996662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.28810 -41.30014 -39.08525 -36.26960 -35.32116 -34.81872 -33.22632 -32.06855 -30.91274 -29.62735 -28.49657 -26.89141 -25.20283 -23.87046 -22.33696 -21.93043 -21.28759 -20.43446 -19.02886 -18.68367 -18.11175 -17.74823 -16.93443 -16.51400 -16.34919 -16.27112 -15.88116 -15.55593 -14.81328 -14.70060 -14.53814 -14.35085 -14.27804 -13.92014 -13.80350 -13.61490 -13.33073 -12.96589 -12.85510 -12.73724 -12.29752 -12.11039 -12.03286 -11.97836 -11.82144 -11.63732 -11.38838 -11.05667 -10.72339 -9.91363 -9.72112 -9.63598 -9.04955 -8.32837 -6.47161 1.02220 1.08747 1.38041 1.38863 1.50363 1.67418 1.99916 2.35125 2.37103 2.81061 2.98714 3.42402 3.50584 3.68693 3.96566 4.10432 4.14935 4.25929 4.39670 4.42746 4.58779 4.68593 4.75130 4.80654 4.86545 4.91108 4.93809 5.00725 5.01731 5.10699 5.22807 5.35832 5.43876 5.56565 5.76203 5.87377 5.95387 6.21855 6.28751 6.57852 6.62438 6.67786 7.09040 7.22783 7.36547 8.74755 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.003172 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.864798 B = 8824.965460 C = 9758.896333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.148 3.852 3 H 0.072 0.928 4 C -0.110 4.110 5 C 0.085 3.915 6 H 0.060 0.940 7 N -0.841 5.841 8 C 0.096 3.904 9 N -0.624 5.624 10 C 0.728 3.272 11 O -0.594 6.594 12 N -0.637 5.637 13 C 0.284 3.716 14 C -0.292 4.292 15 C 0.058 3.942 16 N -0.344 5.344 17 C 0.273 3.727 18 C -0.548 4.548 19 H 0.052 0.948 20 C 0.018 3.982 21 N -0.921 5.921 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.273 1.273 26 N -0.348 5.348 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.353 0.647 33 H 0.359 0.641 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.416 0.584 37 H 0.166 0.834 38 H 0.202 0.798 39 H 0.021 0.979 40 H 0.059 0.941 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 0.990 26.290 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.028 4.028 6 H 0.078 0.922 7 N -0.375 5.375 8 C -0.027 4.027 9 N -0.362 5.362 10 C 0.429 3.571 11 O -0.472 6.472 12 N -0.289 5.289 13 C 0.028 3.972 14 C -0.324 4.324 15 C -0.091 4.091 16 N -0.126 5.126 17 C 0.154 3.846 18 C -0.586 4.586 19 H 0.070 0.930 20 C -0.182 4.182 21 N -0.560 5.560 22 Si 0.797 3.203 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.197 1.197 26 N -0.179 5.179 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.166 0.834 33 H 0.173 0.827 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.253 0.747 37 H 0.183 0.817 38 H 0.219 0.781 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.770 0.421 25.092 25.158 hybrid contribution 1.440 0.494 -0.206 1.536 sum -0.330 0.915 24.886 24.905 Atomic orbital electron populations 1.22110 0.94661 1.02122 1.02748 1.21642 0.94821 0.96141 0.82887 0.91006 1.22792 0.97343 0.99344 0.95342 1.22306 0.97224 0.91613 0.91624 0.92202 1.58504 1.48446 1.23110 1.07397 1.22495 0.95382 0.88437 0.96413 1.47560 1.55529 1.30575 1.02516 1.15248 0.79851 0.82158 0.79846 1.90819 1.44945 1.29023 1.82378 1.41436 1.55655 1.31145 1.00617 1.19082 0.98170 0.95367 0.84563 1.21672 1.12842 1.04189 0.93656 1.23153 0.96907 0.92905 0.96101 1.48831 1.37992 1.19733 1.06076 1.19345 0.97139 0.96633 0.71483 1.21404 0.91667 1.49148 0.96378 0.92980 1.25748 1.03502 0.93984 0.94979 1.69998 1.36743 1.46909 1.02328 0.85337 0.78642 0.78691 0.77676 1.19737 1.19646 1.19742 1.77237 1.26728 1.22720 0.91183 0.89253 0.93961 0.92658 0.88839 0.87650 0.83352 0.82650 0.90582 0.90092 0.74682 0.81668 0.78088 0.96068 0.92286 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.10 71.98 0.65 -2.28 16 2 C 0.15 2.62 3.46 45.35 0.16 2.77 16 3 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.11 -1.11 6.14 31.78 0.20 -0.92 16 5 C 0.08 0.90 4.19 46.30 0.19 1.09 16 6 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 7 N -0.84 -6.45 9.38 -162.93 -1.53 -7.98 16 8 C 0.10 1.54 6.27 86.85 0.54 2.08 16 9 N -0.62 -14.03 3.06 -805.87 -2.47 -16.50 16 10 C 0.73 23.12 8.25 179.05 1.48 24.60 16 11 O -0.59 -22.45 12.52 -4.01 -0.05 -22.50 16 12 N -0.64 -21.39 5.41 -321.24 -1.74 -23.13 16 13 C 0.28 12.00 8.11 133.32 1.08 13.08 16 14 C -0.29 -12.08 9.61 22.11 0.21 -11.87 16 15 C 0.06 2.37 11.44 83.52 0.96 3.33 16 16 N -0.34 -16.67 3.67 -351.83 -1.29 -17.96 16 17 C 0.27 14.43 6.26 85.63 0.54 14.96 16 18 C -0.55 -31.36 9.24 25.60 0.24 -31.13 16 19 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 20 C 0.02 1.01 5.46 84.65 0.46 1.48 16 21 N -0.92 -52.67 13.29 21.45 0.28 -52.39 16 22 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 26 N -0.35 -16.77 12.42 -54.44 -0.68 -17.45 16 27 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.04 1.07 6.90 -2.39 -0.02 1.06 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 0.94 7.85 -2.39 -0.02 0.92 16 31 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.35 2.11 9.08 -89.69 -0.81 1.30 16 33 H 0.36 1.51 9.03 -89.70 -0.81 0.70 16 34 H 0.08 1.16 7.30 -2.38 -0.02 1.15 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.42 11.78 7.30 -92.70 -0.68 11.10 16 37 H 0.17 6.69 5.91 -2.91 -0.02 6.68 16 38 H 0.20 6.51 8.06 -2.91 -0.02 6.49 16 39 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 3.04 8.07 -2.39 -0.02 3.02 16 41 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -72.06 340.73 0.04 -72.01 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -1.22 Total: 22.74 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.71 Total: 17.20 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -7.42 Total: -135.41 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.06 0.04 -72.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351973725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.641 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds