Wall clock time and date at job start Fri Apr 10 2020 17:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46814 * 2 1 4 4 N 1.28709 * 126.03522 * 271.80876 * 3 2 1 5 5 N 1.28513 * 110.63370 * 179.97438 * 4 3 2 6 6 C 1.33315 * 109.44226 * 359.76413 * 5 4 3 7 7 C 1.37008 * 106.37337 * 0.36881 * 6 5 4 8 8 C 1.47228 * 127.19161 * 179.90200 * 7 6 5 9 9 O 1.21619 * 120.00186 * 185.17594 * 8 7 6 10 10 N 1.34777 * 119.99994 * 5.18917 * 8 7 6 11 11 C 1.46493 * 120.00130 * 174.59750 * 10 8 7 12 12 H 1.09003 * 112.84915 * 23.79815 * 11 10 8 13 13 C 1.53782 * 113.61661 * 154.99496 * 11 10 8 14 14 C 1.53784 * 87.07954 * 89.20055 * 13 11 10 15 15 H 1.09002 * 113.61240 * 270.79983 * 14 13 11 16 16 C 1.52999 * 113.61372 * 139.98659 * 14 13 11 17 17 N 1.46496 * 109.47243 * 176.52729 * 16 14 13 18 18 C 1.36935 * 120.00048 * 179.71989 * 17 16 14 19 19 H 1.08002 * 120.00296 * 0.27400 * 18 17 16 20 20 C 1.38818 * 119.99987 * 180.27637 * 18 17 16 21 21 N 1.31619 * 119.99840 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99989 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46950 * 59.99728 * 22 20 18 24 24 H 1.48499 * 109.47058 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47171 * 300.00148 * 22 20 18 26 26 C 1.53772 * 87.17471 * 25.39137 * 14 13 11 27 27 H 1.09009 * 109.46783 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47311 * 299.99590 * 1 2 3 29 29 H 1.09006 * 109.47295 * 60.00066 * 1 2 3 30 30 H 1.09006 * 109.46761 * 240.00185 * 2 1 3 31 31 H 1.08996 * 109.47221 * 120.00063 * 2 1 3 32 32 H 1.08003 * 126.81443 * 180.26444 * 6 5 4 33 33 H 0.96997 * 119.99879 * 354.58693 * 10 8 7 34 34 H 1.08997 * 113.61475 * 334.64941 * 13 11 10 35 35 H 1.08998 * 113.69372 * 203.75864 * 13 11 10 36 36 H 1.09000 * 109.47362 * 56.52164 * 16 14 13 37 37 H 1.09009 * 109.46966 * 296.52774 * 16 14 13 38 38 H 0.96999 * 120.00045 * 359.97438 * 17 16 14 39 39 H 0.97000 * 119.99538 * 180.02562 * 21 20 18 40 40 H 1.08999 * 113.61500 * 89.15947 * 26 14 13 41 41 H 1.08996 * 113.61641 * 220.05903 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2397 2.1061 -1.0403 5 7 2.6622 3.2708 -0.6991 6 6 2.7279 3.3473 0.6302 7 6 2.3194 2.1298 1.1077 8 6 2.2188 1.7146 2.5166 9 8 1.9287 0.5663 2.7930 10 7 2.4480 2.6071 3.5002 11 6 2.2332 2.2274 4.8986 12 1 2.2973 1.1512 5.0596 13 6 3.0666 3.0500 5.8954 14 6 1.8951 4.0456 5.9324 15 1 1.9622 4.8271 5.1755 16 6 1.6020 4.5955 7.3297 17 7 0.5309 5.5915 7.2478 18 6 0.0920 6.2199 8.3825 19 1 0.5384 5.9844 9.3373 20 6 -0.9269 7.1596 8.3056 21 7 -1.4714 7.4462 7.1421 22 14 -1.5252 8.0173 9.8535 23 1 -0.3989 8.7593 10.4750 24 1 -2.6110 8.9682 9.5042 25 1 -2.0407 7.0067 10.8116 26 6 0.9856 2.8733 5.5284 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.0425 4.1992 1.2147 33 1 2.7553 3.5009 3.2821 34 1 3.9783 3.4642 5.4649 35 1 3.2392 2.5434 6.8450 36 1 2.5012 5.0612 7.7329 37 1 1.2909 3.7803 7.9831 38 1 0.1301 5.8033 6.3902 39 1 -2.1831 8.1030 7.0884 40 1 0.5873 2.3172 6.3770 41 1 0.2197 3.1450 4.8021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485682891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:58 Heat of formation + Delta-G solvation = 67.853088 kcal Electronic energy + Delta-G solvation = -22968.175285 eV Core-core repulsion = 19499.402585 eV Total energy + Delta-G solvation = -3468.772701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.42554 -41.24865 -39.45546 -36.63187 -36.24154 -34.65701 -33.00615 -32.12813 -31.83171 -28.53993 -26.60230 -26.16265 -25.28130 -24.69122 -23.46560 -22.70317 -21.65006 -20.29632 -19.18016 -19.04261 -18.03735 -17.54636 -17.03121 -16.68757 -16.11942 -15.97719 -15.83700 -15.53276 -15.25460 -15.07539 -14.90345 -14.41042 -13.99604 -13.73457 -13.37223 -13.24914 -13.19535 -13.10691 -12.89529 -12.69515 -12.66860 -12.22434 -12.02839 -11.91035 -11.72315 -11.36997 -11.34237 -11.24365 -11.13174 -10.83075 -10.67589 -10.11475 -8.95276 -7.93432 -5.21135 -0.20562 0.99810 1.17179 1.48054 1.50687 1.56853 1.88531 1.99274 2.57600 3.22314 3.36698 3.39770 3.60434 3.62339 3.63835 3.85879 3.91034 3.95099 3.99345 4.22004 4.31039 4.37243 4.57344 4.61505 4.76403 4.81264 4.87137 4.89873 4.94299 4.95616 5.03249 5.06064 5.18205 5.28184 5.32848 5.35793 5.50480 5.66178 6.28800 6.29860 6.90739 7.21088 7.35735 8.14927 8.36305 9.29881 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.002847 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.250448 B = 9831.654089 C =10165.669714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.096 3.904 3 N -0.249 5.249 4 N -0.077 5.077 5 N -0.303 5.303 6 C 0.011 3.989 7 C -0.081 4.081 8 C 0.603 3.397 9 O -0.558 6.558 10 N -0.680 5.680 11 C 0.130 3.870 12 H 0.106 0.894 13 C -0.115 4.115 14 C -0.115 4.115 15 H 0.088 0.912 16 C 0.159 3.841 17 N -0.746 5.746 18 C -0.245 4.245 19 H 0.075 0.925 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.279 1.279 26 C -0.143 4.143 27 H 0.112 0.888 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.231 0.769 33 H 0.417 0.583 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.373 0.627 39 H 0.250 0.750 40 H 0.088 0.912 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.680 -16.132 -12.342 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.047 5.047 4 N -0.057 5.057 5 N -0.164 5.164 6 C -0.150 4.150 7 C -0.215 4.215 8 C 0.388 3.612 9 O -0.437 6.437 10 N -0.331 5.331 11 C 0.025 3.975 12 H 0.124 0.876 13 C -0.154 4.154 14 C -0.134 4.134 15 H 0.106 0.894 16 C 0.033 3.967 17 N -0.388 5.388 18 C -0.377 4.377 19 H 0.093 0.907 20 C -0.269 4.269 21 N -0.621 5.621 22 Si 0.800 3.200 23 H -0.203 1.203 24 H -0.223 1.223 25 H -0.205 1.205 26 C -0.181 4.181 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.140 0.860 32 H 0.247 0.753 33 H 0.255 0.745 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.205 0.795 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.435 -16.903 -13.508 24.022 hybrid contribution -0.835 1.191 1.465 2.064 sum 9.601 -15.713 -12.043 22.002 Atomic orbital electron populations 1.22081 0.92084 1.05400 1.02213 1.22724 0.97224 0.74541 1.07838 1.48203 1.39186 1.14266 1.03042 1.78217 1.16034 0.99087 1.12350 1.74893 1.16933 1.10734 1.13858 1.24514 1.01283 0.97775 0.91451 1.22015 1.13931 0.94737 0.90852 1.16659 0.76736 0.85019 0.82787 1.90774 1.49768 1.19192 1.83948 1.45242 1.66631 1.16066 1.05150 1.21891 0.96397 1.00209 0.79002 0.87575 1.23237 0.96905 0.95640 0.99581 1.22738 0.97482 0.96425 0.96723 0.89363 1.20840 0.89906 0.90473 0.95513 1.42577 1.42441 1.46952 1.06822 1.19624 1.13514 1.15657 0.88937 0.90744 1.25548 1.00116 1.01562 0.99656 1.69804 1.29662 1.37846 1.24743 0.85243 0.77494 0.78061 0.79169 1.20324 1.22281 1.20484 1.23461 0.96752 0.97448 1.00474 0.86950 0.93508 0.91799 0.85134 0.86006 0.75255 0.74497 0.88656 0.87276 0.96107 0.96169 0.79523 0.94099 0.89387 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.24 71.98 0.74 -1.47 16 2 C 0.10 1.41 6.72 86.38 0.58 1.99 16 3 N -0.25 -5.18 3.39 -335.42 -1.14 -6.32 16 4 N -0.08 -1.87 13.14 37.02 0.49 -1.38 16 5 N -0.30 -7.51 12.35 -57.50 -0.71 -8.22 16 6 C 0.01 0.21 11.55 84.18 0.97 1.18 16 7 C -0.08 -1.66 6.98 40.41 0.28 -1.38 16 8 C 0.60 12.70 7.80 86.61 0.68 13.38 16 9 O -0.56 -14.25 14.38 -4.09 -0.06 -14.31 16 10 N -0.68 -11.91 5.25 -443.22 -2.33 -14.24 16 11 C 0.13 2.54 4.36 45.58 0.20 2.74 16 12 H 0.11 2.15 7.41 -2.39 -0.02 2.13 16 13 C -0.12 -2.06 7.39 31.12 0.23 -1.83 16 14 C -0.12 -3.06 3.63 -10.27 -0.04 -3.09 16 15 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 16 C 0.16 5.84 6.08 86.38 0.53 6.36 16 17 N -0.75 -36.89 5.60 -343.45 -1.92 -38.81 16 18 C -0.25 -13.57 9.99 84.04 0.84 -12.73 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 21 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 22 Si 0.97 45.85 29.55 68.60 2.03 47.87 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C -0.14 -3.69 7.44 31.18 0.23 -3.46 16 27 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.13 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.12 1.90 6.26 -2.39 -0.01 1.88 16 32 H 0.23 2.46 7.56 -2.91 -0.02 2.43 16 33 H 0.42 5.38 7.74 -92.71 -0.72 4.66 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 1.78 8.10 -2.39 -0.02 1.77 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.02 0.75 7.88 -2.38 -0.02 0.73 16 38 H 0.37 19.68 7.67 -92.71 -0.71 18.97 16 39 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.09 2.37 7.92 -2.39 -0.02 2.35 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -72.87 347.52 1.97 -70.90 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.37 Total: 25.56 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 5.70 Total: -2.22 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -5.33 Total: -127.80 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.06 Total: -14.31 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.87 1.97 -70.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485682891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.757 kcal (2) G-P(sol) polarization free energy of solvation -72.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds