Wall clock time and date at job start Fri Apr 10 2020 17:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34582 * 125.75482 * 2 1 4 4 N 1.30869 * 107.63042 * 179.72914 * 3 2 1 5 5 C 1.34554 * 107.26417 * 0.36711 * 4 3 2 6 6 C 1.47873 * 126.04311 * 179.89217 * 5 4 3 7 7 O 1.21553 * 119.99837 * 179.68838 * 6 5 4 8 8 N 1.34777 * 120.00239 * 359.69149 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27771 * 8 6 5 10 10 H 1.09002 * 110.01961 * 34.01779 * 9 8 6 11 11 C 1.54267 * 110.03022 * 272.62985 * 9 8 6 12 12 C 1.54973 * 104.15703 * 217.13964 * 11 9 8 13 13 C 1.54879 * 102.77934 * 37.88680 * 12 11 9 14 14 H 1.09001 * 110.49067 * 80.76271 * 13 12 11 15 15 C 1.52997 * 110.48562 * 203.40668 * 13 12 11 16 16 N 1.46500 * 109.47125 * 289.77192 * 15 13 12 17 17 C 1.36938 * 120.00372 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99383 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31614 * 120.00427 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99780 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47293 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47296 * 120.00239 * 21 19 17 24 24 H 1.48503 * 109.46761 * 239.99981 * 21 19 17 25 25 C 1.53869 * 110.03273 * 155.41273 * 9 8 6 26 26 N 1.28861 * 125.74515 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46685 * 270.02028 * 1 2 3 28 28 H 1.09000 * 109.46420 * 30.01598 * 1 2 3 29 29 H 1.08995 * 109.47285 * 150.01973 * 1 2 3 30 30 H 1.08003 * 126.18313 * 359.97135 * 3 2 1 31 31 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 32 32 H 1.09004 * 110.48770 * 335.78038 * 11 9 8 33 33 H 1.08999 * 110.48692 * 98.43166 * 11 9 8 34 34 H 1.08996 * 110.71488 * 279.56696 * 12 11 9 35 35 H 1.08999 * 110.92162 * 156.30021 * 12 11 9 36 36 H 1.09001 * 109.47641 * 49.77514 * 15 13 12 37 37 H 1.09008 * 109.47304 * 169.77769 * 15 13 12 38 38 H 0.96996 * 120.00120 * 0.02562 * 16 15 13 39 39 H 0.97002 * 120.00446 * 179.97438 * 20 19 17 40 40 H 1.09005 * 110.03818 * 238.56945 * 25 9 8 41 41 H 1.09005 * 110.03354 * 359.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0922 0.0000 4 7 3.4951 0.6851 0.0059 5 6 3.4750 -0.6603 0.0013 6 6 4.6574 -1.5482 0.0030 7 8 4.5113 -2.7549 0.0041 8 7 5.8972 -1.0196 0.0034 9 6 7.0686 -1.8993 -0.0011 10 1 6.8565 -2.8001 -0.5770 11 6 7.4529 -2.2748 1.4450 12 6 9.0023 -2.3019 1.4305 13 6 9.3571 -1.1151 0.5008 14 1 9.3031 -0.1733 1.0468 15 6 10.7495 -1.3061 -0.1037 16 7 11.7626 -1.1386 0.9411 17 6 13.0910 -1.2657 0.6336 18 1 13.3917 -1.4892 -0.3794 19 6 14.0509 -1.1075 1.6237 20 7 13.6844 -0.8357 2.8582 21 14 15.8629 -1.2803 1.2039 22 1 16.0092 -1.5858 -0.2419 23 1 16.5666 -0.0104 1.5157 24 1 16.4535 -2.3829 2.0045 25 6 8.2788 -1.1626 -0.6014 26 7 2.2178 -1.0459 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3632 0.8899 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 1.9165 2.1190 -0.0004 31 1 6.0138 -0.0566 0.0022 32 1 7.0913 -1.5206 2.1439 33 1 7.0558 -3.2567 1.7025 34 1 9.3677 -3.2409 1.0149 35 1 9.4037 -2.1421 2.4312 36 1 10.8273 -2.3071 -0.5281 37 1 10.9101 -0.5657 -0.8875 38 1 11.4926 -0.9383 1.8509 39 1 14.3552 -0.7255 3.5502 40 1 8.6546 -1.7062 -1.4683 41 1 7.9944 -0.1506 -0.8899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486197536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:02 Heat of formation + Delta-G solvation = 61.415967 kcal Electronic energy + Delta-G solvation = -22566.479098 eV Core-core repulsion = 19097.427262 eV Total energy + Delta-G solvation = -3469.051835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.78070 -39.85793 -37.89779 -35.02655 -34.75691 -33.29518 -32.10779 -31.04467 -28.72541 -28.71506 -27.34386 -24.67148 -23.90212 -22.61129 -22.11016 -20.82678 -20.23854 -19.58601 -18.41838 -17.15265 -16.97627 -16.73824 -16.47476 -15.40779 -15.03136 -14.80977 -14.45432 -14.12828 -13.91905 -13.70759 -13.54692 -13.34320 -12.95299 -12.74328 -12.31265 -12.12894 -11.76366 -11.26011 -11.02959 -10.84092 -10.81858 -10.79974 -10.65509 -10.49821 -10.29201 -10.20975 -10.13615 -9.92760 -9.87569 -9.61944 -9.04969 -8.80993 -6.84365 -5.70812 -2.98587 1.09460 1.76986 1.79409 2.90557 3.21014 3.47193 3.52723 3.55044 3.78931 3.96132 4.36955 4.44209 4.63086 4.64528 4.74632 4.81551 4.86599 5.13442 5.56849 5.61409 5.61694 5.69181 5.72073 5.73963 5.92274 5.96271 5.98591 6.06931 6.17247 6.22778 6.32996 6.38756 6.57770 6.63363 6.68152 6.88426 7.02038 7.32204 7.70014 7.76146 8.08004 8.48614 9.59653 10.19356 10.53955 11.52321 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.046728 B = 0.002328 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.063936 B =12027.033224 C =12192.526942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.307 5.307 3 C 0.191 3.809 4 N -0.484 5.484 5 C 0.144 3.856 6 C 0.614 3.386 7 O -0.520 6.520 8 N -0.700 5.700 9 C 0.142 3.858 10 H 0.093 0.907 11 C -0.134 4.134 12 C -0.111 4.111 13 C -0.097 4.097 14 H 0.076 0.924 15 C 0.160 3.840 16 N -0.732 5.732 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.122 4.122 26 N -0.254 5.254 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.227 0.773 31 H 0.409 0.591 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.020 0.980 37 H 0.017 0.983 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.078 0.922 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.369 5.078 -6.275 30.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.102 5.102 3 C -0.105 4.105 4 N -0.209 5.209 5 C -0.136 4.136 6 C 0.395 3.605 7 O -0.393 6.393 8 N -0.352 5.352 9 C 0.038 3.962 10 H 0.111 0.889 11 C -0.173 4.173 12 C -0.148 4.148 13 C -0.116 4.116 14 H 0.094 0.906 15 C 0.032 3.968 16 N -0.376 5.376 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.161 4.161 26 N -0.093 5.093 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.243 0.757 31 H 0.246 0.754 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -29.210 3.678 -6.383 30.125 hybrid contribution 0.584 0.874 0.181 1.067 sum -28.626 4.552 -6.203 29.642 Atomic orbital electron populations 1.22264 0.72158 1.06031 1.05090 1.47411 1.09386 1.03877 1.49547 1.26514 0.85842 0.96012 1.02095 1.71286 1.20456 1.09392 1.19801 1.23842 0.92257 0.89511 1.07955 1.16299 0.81194 0.85827 0.77188 1.90832 1.85608 1.13505 1.49332 1.45972 1.04402 1.11197 1.73614 1.21824 0.83432 0.93348 0.97568 0.88935 1.22824 0.97140 1.01742 0.95591 1.22479 0.93042 0.98688 1.00633 1.22152 0.94767 0.99052 0.95609 0.90569 1.20701 0.86641 0.97496 0.91931 1.42362 1.01824 1.85769 1.07645 1.19293 0.82988 1.39923 0.94504 0.91193 1.24735 0.97943 1.02974 0.95578 1.69668 1.32342 1.55808 1.00499 0.86124 0.85609 0.77176 0.77348 1.20595 1.21954 1.21939 1.22438 0.94013 1.00491 0.99138 1.74360 1.02902 1.13265 1.18758 0.89049 0.87902 0.88131 0.75663 0.75431 0.91357 0.91328 0.91147 0.90850 0.96220 0.96512 0.78268 0.93645 0.90336 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.15 11.38 59.85 0.68 0.83 16 2 N -0.31 -2.25 3.72 -69.39 -0.26 -2.51 16 3 C 0.19 1.28 12.62 -90.49 -1.14 0.14 16 4 N -0.48 -5.20 11.09 -12.36 -0.14 -5.33 16 5 C 0.14 1.89 7.96 -156.35 -1.24 0.64 16 6 C 0.61 8.94 7.83 -12.32 -0.10 8.84 16 7 O -0.52 -9.18 16.75 5.32 0.09 -9.09 16 8 N -0.70 -8.76 5.04 -53.66 -0.27 -9.04 16 9 C 0.14 1.86 3.23 -66.82 -0.22 1.65 16 10 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 11 C -0.13 -1.87 6.54 -25.03 -0.16 -2.03 16 12 C -0.11 -1.75 6.19 -24.70 -0.15 -1.90 16 13 C -0.10 -1.56 2.89 -88.97 -0.26 -1.81 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C 0.16 3.24 5.54 -4.04 -0.02 3.21 16 16 N -0.73 -18.79 5.49 -59.91 -0.33 -19.12 16 17 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 18 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 19 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 20 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 21 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 C -0.12 -1.58 6.14 -25.61 -0.16 -1.74 16 26 N -0.25 -3.10 12.08 32.07 0.39 -2.71 16 27 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 29 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.23 0.30 8.06 -52.48 -0.42 -0.13 16 31 H 0.41 4.53 8.02 -40.82 -0.33 4.20 16 32 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.15 7.97 -51.93 -0.41 0.74 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.02 0.41 8.02 -51.93 -0.42 -0.01 16 37 H 0.02 0.35 8.14 -51.92 -0.42 -0.08 16 38 H 0.38 10.32 7.63 -40.82 -0.31 10.01 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 40 H 0.08 0.99 7.84 -51.93 -0.41 0.58 16 41 H 0.07 0.82 7.61 -51.93 -0.40 0.42 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -37.27 347.81 -8.60 -45.87 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.01 Total: 6.52 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -3.02 Total: 0.36 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: 0.12 Total: -66.67 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.27 -8.60 -45.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486197536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.285 kcal (2) G-P(sol) polarization free energy of solvation -37.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds