Wall clock time and date at job start Fri Apr 10 2020 17:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46831 * 2 1 4 4 C 1.52994 * 109.46990 * 239.99751 * 2 1 3 5 5 N 1.46499 * 109.47201 * 184.99738 * 4 2 1 6 6 C 1.34776 * 120.00211 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99819 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99952 * 180.02562 * 6 5 4 9 9 N 1.46497 * 109.46909 * 180.02562 * 8 6 5 10 10 C 1.35317 * 125.87010 * 125.00233 * 9 8 6 11 11 C 1.35348 * 106.17735 * 180.24864 * 10 9 8 12 12 C 1.50695 * 126.75026 * 179.78015 * 11 10 9 13 13 C 1.53000 * 117.50251 * 343.61371 * 12 11 10 14 14 C 1.52999 * 60.00160 * 252.51483 * 13 12 11 15 15 N 1.33774 * 106.49647 * 359.63857 * 11 10 9 16 16 N 1.28636 * 108.88665 * 0.37294 * 15 11 10 17 17 N 1.46501 * 109.46918 * 119.99681 * 2 1 3 18 18 C 1.36930 * 120.00229 * 274.99638 * 17 2 1 19 19 H 1.08008 * 119.99948 * 0.02562 * 18 17 2 20 20 C 1.38810 * 120.00135 * 180.02562 * 18 17 2 21 21 N 1.31618 * 119.99988 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99866 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47210 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46981 * 120.00095 * 22 20 18 25 25 H 1.48501 * 109.46851 * 239.99809 * 22 20 18 26 26 H 1.09003 * 109.46984 * 300.00262 * 1 2 3 27 27 H 1.08997 * 109.47088 * 60.00179 * 1 2 3 28 28 H 1.08992 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47338 * 64.99876 * 4 2 1 30 30 H 1.08995 * 109.47457 * 305.00032 * 4 2 1 31 31 H 0.97004 * 120.00060 * 0.02562 * 5 4 2 32 32 H 1.09000 * 109.46919 * 60.00739 * 8 6 5 33 33 H 1.08996 * 109.46955 * 299.99699 * 8 6 5 34 34 H 1.08002 * 126.90702 * 359.97438 * 10 9 8 35 35 H 1.09004 * 115.55449 * 129.32754 * 12 11 10 36 36 H 1.08999 * 117.49410 * 0.02562 * 13 12 11 37 37 H 1.08994 * 117.50379 * 145.02356 * 13 12 11 38 38 H 1.09006 * 117.49984 * 252.50809 * 14 13 12 39 39 H 1.09003 * 117.52112 * 107.47762 * 14 13 12 40 40 H 0.97000 * 119.99527 * 94.99978 * 17 2 1 41 41 H 0.96994 * 119.99731 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4292 -2.1907 7 8 3.5698 -1.8843 -3.1394 8 6 5.6749 -1.5378 -2.1300 9 7 6.1632 -2.2284 -3.3262 10 6 7.0923 -1.7574 -4.1899 11 6 7.2364 -2.7070 -5.1435 12 6 8.1551 -2.6542 -6.3369 13 6 8.7281 -1.2905 -6.7277 14 6 7.6446 -1.9405 -7.5903 15 7 6.4053 -3.7029 -4.8165 16 7 5.7818 -3.3873 -3.7366 17 7 2.0183 -0.6906 1.1962 18 6 2.1492 -0.0074 2.3757 19 1 1.8920 1.0405 2.4243 20 6 2.6123 -0.6616 3.5090 21 7 2.9262 -1.9384 3.4497 22 14 2.7901 0.2702 5.1182 23 1 2.3753 1.6824 4.9210 24 1 1.9299 -0.3591 6.1523 25 1 4.2071 0.2282 5.5606 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7516 -0.1584 -2.1370 30 1 1.6054 -1.7198 -1.2951 31 1 3.9824 -0.4627 -0.4316 32 1 5.9629 -2.1007 -1.2422 33 1 6.1097 -0.5394 -2.0844 34 1 7.6109 -0.8117 -4.1325 35 1 8.7918 -3.5275 -6.4792 36 1 8.4410 -0.4315 -6.1212 37 1 9.7420 -1.2662 -7.1269 38 1 7.9457 -2.3440 -8.5572 39 1 6.6441 -1.5095 -7.5518 40 1 2.2490 -1.6317 1.1527 41 1 3.2502 -2.3954 4.2416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491478604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:24 Heat of formation + Delta-G solvation = 102.152746 kcal Electronic energy + Delta-G solvation = -22746.126940 eV Core-core repulsion = 19278.841584 eV Total energy + Delta-G solvation = -3467.285356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.30397 -39.59285 -37.52031 -36.49120 -34.42656 -33.73745 -32.00460 -30.77564 -29.27768 -28.57869 -25.69710 -24.21752 -23.76905 -22.91032 -21.98514 -20.85840 -20.36766 -19.95234 -17.80719 -17.56833 -17.20857 -16.25422 -15.63389 -15.57021 -15.45735 -14.91165 -14.67012 -14.53928 -14.02067 -13.75521 -13.12785 -13.01336 -12.57293 -12.29878 -12.20309 -12.00540 -11.83073 -11.59501 -11.46857 -11.29109 -10.97220 -10.93987 -10.85184 -10.47529 -10.44568 -10.36878 -10.09668 -9.82206 -9.68362 -9.10135 -9.08594 -8.86099 -7.15023 -5.91165 -3.22226 1.52821 2.11231 2.48083 2.56381 3.27377 3.32909 3.39393 3.41593 3.52792 4.05882 4.39347 4.45731 4.60094 4.60889 4.66498 4.70739 4.81665 5.00272 5.19002 5.32436 5.34170 5.37361 5.46733 5.55693 5.67809 5.81583 5.82408 5.90802 5.96930 6.06667 6.08176 6.19342 6.42599 6.46119 6.59540 6.68286 6.93080 7.57090 7.62279 8.24169 8.26523 8.54876 9.38150 9.91980 10.27638 11.30550 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023894 B = 0.002875 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.564824 B = 9738.306964 C =10310.753989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.054 0.946 4 C 0.117 3.883 5 N -0.704 5.704 6 C 0.499 3.501 7 O -0.524 6.524 8 C 0.094 3.906 9 N -0.277 5.277 10 C -0.050 4.050 11 C 0.006 3.994 12 C -0.069 4.069 13 C -0.171 4.171 14 C -0.166 4.166 15 N -0.268 5.268 16 N -0.047 5.047 17 N -0.724 5.724 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.413 0.587 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.188 0.812 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.385 0.615 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 5.112 -16.009 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.072 0.928 4 C -0.008 4.008 5 N -0.357 5.357 6 C 0.281 3.719 7 O -0.400 6.400 8 C -0.031 4.031 9 N -0.070 5.070 10 C -0.200 4.200 11 C -0.132 4.132 12 C -0.089 4.089 13 C -0.208 4.208 14 C -0.204 4.204 15 N -0.135 5.135 16 N -0.027 5.027 17 N -0.367 5.367 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.219 1.219 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.249 0.751 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.205 0.795 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.219 0.781 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.297 3.713 -16.223 19.063 hybrid contribution 0.917 1.328 1.454 2.172 sum 10.214 5.041 -14.768 18.650 Atomic orbital electron populations 1.22366 0.98168 1.01408 1.00457 1.20510 0.92804 0.95688 0.86015 0.92778 1.21755 0.78596 1.01518 0.98899 1.45843 1.08676 1.58322 1.22863 1.20101 0.88586 0.79451 0.83751 1.90806 1.69180 1.46695 1.33274 1.21947 0.94972 1.00001 0.86223 1.46756 1.26749 1.13864 1.19597 1.23219 0.99390 1.03487 0.93944 1.20962 1.01152 0.92773 0.98294 1.19967 0.99687 0.97308 0.91951 1.23011 0.98908 0.95327 1.03594 1.23004 0.99298 1.03345 0.94708 1.75087 1.07407 1.24188 1.06822 1.78497 1.18208 0.97803 1.08149 1.42500 1.78092 1.10857 1.05269 1.19253 1.37055 0.93924 0.87333 0.91034 1.24759 1.01928 0.95905 0.98046 1.69670 1.50371 1.08631 1.28973 0.86147 0.77312 0.78793 0.84050 1.20560 1.21834 1.21856 0.92217 0.94158 0.93118 0.91642 0.91480 0.75067 0.84837 0.84769 0.79495 0.86119 0.88613 0.88008 0.88132 0.88627 0.78051 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.16 2.79 3.05 -67.93 -0.21 2.59 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 C 0.12 1.84 5.23 -4.05 -0.02 1.82 16 5 N -0.70 -10.24 5.39 -60.29 -0.32 -10.57 16 6 C 0.50 7.40 7.84 -10.98 -0.09 7.31 16 7 O -0.52 -10.06 15.67 5.55 0.09 -9.97 16 8 C 0.09 1.01 6.94 -5.19 -0.04 0.97 16 9 N -0.28 -3.74 3.20 -62.44 -0.20 -3.94 16 10 C -0.05 -0.56 10.89 -17.05 -0.19 -0.75 16 11 C 0.01 0.07 6.88 -82.78 -0.57 -0.50 16 12 C -0.07 -0.65 6.33 -91.77 -0.58 -1.23 16 13 C -0.17 -1.13 10.02 -26.73 -0.27 -1.40 16 14 C -0.17 -1.34 10.23 -26.73 -0.27 -1.62 16 15 N -0.27 -4.51 12.41 33.29 0.41 -4.09 16 16 N -0.05 -0.82 12.13 60.35 0.73 -0.09 16 17 N -0.72 -16.04 4.56 -53.42 -0.24 -16.28 16 18 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 19 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -26.21 13.06 55.49 0.72 -25.48 16 22 Si 0.91 20.97 29.55 -169.99 -5.02 15.94 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.41 5.76 8.14 -40.82 -0.33 5.42 16 32 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.13 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.19 1.24 7.45 -52.49 -0.39 0.85 16 35 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 0.56 7.23 -51.93 -0.38 0.19 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.39 9.34 7.80 -40.82 -0.32 9.02 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -33.84 353.96 -6.65 -40.49 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.03 Total: 10.43 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.12 Total: -1.77 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 1.10 Total: -60.46 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.84 -6.65 -40.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491478604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.644 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds