Wall clock time and date at job start Fri Apr 10 2020 17:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46831 * 2 1 4 4 C 1.52994 * 109.46990 * 239.99751 * 2 1 3 5 5 N 1.46499 * 109.47201 * 184.99738 * 4 2 1 6 6 C 1.34776 * 120.00211 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99819 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99952 * 180.02562 * 6 5 4 9 9 N 1.46497 * 109.46909 * 180.02562 * 8 6 5 10 10 C 1.35317 * 125.87010 * 125.00233 * 9 8 6 11 11 C 1.35348 * 106.17735 * 180.24864 * 10 9 8 12 12 C 1.50695 * 126.75026 * 179.78015 * 11 10 9 13 13 C 1.53000 * 117.50251 * 343.61371 * 12 11 10 14 14 C 1.52999 * 60.00160 * 252.51483 * 13 12 11 15 15 N 1.33774 * 106.49647 * 359.63857 * 11 10 9 16 16 N 1.28636 * 108.88665 * 0.37294 * 15 11 10 17 17 N 1.46501 * 109.46918 * 119.99681 * 2 1 3 18 18 C 1.36930 * 120.00229 * 274.99638 * 17 2 1 19 19 H 1.08008 * 119.99948 * 0.02562 * 18 17 2 20 20 C 1.38810 * 120.00135 * 180.02562 * 18 17 2 21 21 N 1.31618 * 119.99988 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99866 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47210 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46981 * 120.00095 * 22 20 18 25 25 H 1.48501 * 109.46851 * 239.99809 * 22 20 18 26 26 H 1.09003 * 109.46984 * 300.00262 * 1 2 3 27 27 H 1.08997 * 109.47088 * 60.00179 * 1 2 3 28 28 H 1.08992 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47338 * 64.99876 * 4 2 1 30 30 H 1.08995 * 109.47457 * 305.00032 * 4 2 1 31 31 H 0.97004 * 120.00060 * 0.02562 * 5 4 2 32 32 H 1.09000 * 109.46919 * 60.00739 * 8 6 5 33 33 H 1.08996 * 109.46955 * 299.99699 * 8 6 5 34 34 H 1.08002 * 126.90702 * 359.97438 * 10 9 8 35 35 H 1.09004 * 115.55449 * 129.32754 * 12 11 10 36 36 H 1.08999 * 117.49410 * 0.02562 * 13 12 11 37 37 H 1.08994 * 117.50379 * 145.02356 * 13 12 11 38 38 H 1.09006 * 117.49984 * 252.50809 * 14 13 12 39 39 H 1.09003 * 117.52112 * 107.47762 * 14 13 12 40 40 H 0.97000 * 119.99527 * 94.99978 * 17 2 1 41 41 H 0.96994 * 119.99731 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4292 -2.1907 7 8 3.5698 -1.8843 -3.1394 8 6 5.6749 -1.5378 -2.1300 9 7 6.1632 -2.2284 -3.3262 10 6 7.0923 -1.7574 -4.1899 11 6 7.2364 -2.7070 -5.1435 12 6 8.1551 -2.6542 -6.3369 13 6 8.7281 -1.2905 -6.7277 14 6 7.6446 -1.9405 -7.5903 15 7 6.4053 -3.7029 -4.8165 16 7 5.7818 -3.3873 -3.7366 17 7 2.0183 -0.6906 1.1962 18 6 2.1492 -0.0074 2.3757 19 1 1.8920 1.0405 2.4243 20 6 2.6123 -0.6616 3.5090 21 7 2.9262 -1.9384 3.4497 22 14 2.7901 0.2702 5.1182 23 1 2.3753 1.6824 4.9210 24 1 1.9299 -0.3591 6.1523 25 1 4.2071 0.2282 5.5606 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.7516 -0.1584 -2.1370 30 1 1.6054 -1.7198 -1.2951 31 1 3.9824 -0.4627 -0.4316 32 1 5.9629 -2.1007 -1.2422 33 1 6.1097 -0.5394 -2.0844 34 1 7.6109 -0.8117 -4.1325 35 1 8.7918 -3.5275 -6.4792 36 1 8.4410 -0.4315 -6.1212 37 1 9.7420 -1.2662 -7.1269 38 1 7.9457 -2.3440 -8.5572 39 1 6.6441 -1.5095 -7.5518 40 1 2.2490 -1.6317 1.1527 41 1 3.2502 -2.3954 4.2416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491478604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:23 Heat of formation + Delta-G solvation = 77.339095 kcal Electronic energy + Delta-G solvation = -22747.202941 eV Core-core repulsion = 19278.841584 eV Total energy + Delta-G solvation = -3468.361357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.29145 -40.81456 -38.21474 -37.93222 -35.44911 -35.26761 -33.67203 -31.70139 -30.76314 -29.85949 -26.97496 -25.62037 -25.03132 -23.68878 -22.84395 -21.81981 -21.73021 -21.04486 -19.38421 -18.58561 -18.50187 -17.23440 -16.96840 -16.79607 -16.35302 -16.25590 -15.64998 -15.57651 -15.30903 -15.21478 -14.62724 -14.11842 -13.78572 -13.67536 -13.39696 -13.25837 -13.07071 -12.81539 -12.55700 -12.49663 -12.28450 -12.18475 -12.12456 -11.73174 -11.71255 -11.65773 -11.41658 -11.18725 -10.99667 -10.80829 -10.12787 -9.98734 -9.02654 -7.91065 -5.20277 0.58018 1.23166 1.43006 1.49349 1.50087 1.52944 1.60752 2.18342 2.58347 2.88906 3.28282 3.43290 3.56549 3.73025 3.87561 3.90469 3.97381 4.00672 4.03582 4.07265 4.28743 4.38034 4.41461 4.62428 4.71494 4.79074 4.83295 4.86592 4.99180 5.05435 5.20644 5.24126 5.24752 5.31739 5.33564 5.51732 5.57553 5.58520 6.29421 6.45193 7.09462 7.37316 7.52120 8.08911 8.33308 9.31605 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023894 B = 0.002875 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.564824 B = 9738.306964 C =10310.753989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 H 0.067 0.933 4 C 0.125 3.875 5 N -0.699 5.699 6 C 0.498 3.502 7 O -0.572 6.572 8 C 0.095 3.905 9 N -0.278 5.278 10 C -0.032 4.032 11 C -0.009 4.009 12 C -0.092 4.092 13 C -0.141 4.141 14 C -0.174 4.174 15 N -0.310 5.310 16 N -0.107 5.107 17 N -0.732 5.732 18 C -0.230 4.230 19 H 0.080 0.920 20 C -0.070 4.070 21 N -0.967 5.967 22 Si 0.965 3.035 23 H -0.265 1.265 24 H -0.304 1.304 25 H -0.295 1.295 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.418 0.582 32 H 0.147 0.853 33 H 0.190 0.810 34 H 0.238 0.762 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.372 0.628 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.243 8.113 -16.607 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.085 0.915 4 C 0.001 3.999 5 N -0.351 5.351 6 C 0.282 3.718 7 O -0.451 6.451 8 C -0.029 4.029 9 N -0.071 5.071 10 C -0.182 4.182 11 C -0.148 4.148 12 C -0.112 4.112 13 C -0.178 4.178 14 C -0.212 4.212 15 N -0.176 5.176 16 N -0.085 5.085 17 N -0.373 5.373 18 C -0.362 4.362 19 H 0.098 0.902 20 C -0.263 4.263 21 N -0.618 5.618 22 Si 0.796 3.204 23 H -0.190 1.190 24 H -0.232 1.232 25 H -0.222 1.222 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.255 0.745 32 H 0.165 0.835 33 H 0.207 0.793 34 H 0.255 0.745 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.204 0.796 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.834 6.753 -16.828 21.122 hybrid contribution 0.399 0.464 1.533 1.651 sum 11.234 7.216 -15.295 20.303 Atomic orbital electron populations 1.22267 0.97159 1.01005 1.01417 1.20672 0.93343 0.95879 0.84813 0.91472 1.21568 0.79491 1.00303 0.98571 1.45782 1.08164 1.58185 1.23013 1.20750 0.90343 0.78026 0.82648 1.90793 1.70638 1.48569 1.35124 1.22255 0.91891 1.02838 0.85874 1.46993 1.26764 1.13153 1.20211 1.24007 0.97835 1.04370 0.92032 1.21632 1.00987 0.92403 0.99765 1.20084 1.00235 0.99349 0.91544 1.23168 0.99351 0.93623 1.01679 1.23048 0.99350 1.03723 0.95032 1.75000 1.08767 1.26407 1.07393 1.78431 1.20417 1.00177 1.09484 1.42638 1.78254 1.10325 1.06078 1.19596 1.34389 0.94199 0.88006 0.90200 1.25434 1.03238 0.96626 1.01006 1.69816 1.52626 1.10156 1.29175 0.85196 0.76571 0.78295 0.80374 1.18957 1.23221 1.22194 0.93506 0.90889 0.94254 0.90033 0.93624 0.74478 0.83541 0.79275 0.74534 0.86062 0.87254 0.85773 0.86850 0.90258 0.79558 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.49 71.98 0.68 -4.30 16 2 C 0.16 5.38 3.05 44.99 0.14 5.52 16 3 H 0.07 2.11 8.08 -2.38 -0.02 2.09 16 4 C 0.13 3.84 5.23 86.38 0.45 4.29 16 5 N -0.70 -19.44 5.39 -463.06 -2.49 -21.93 16 6 C 0.50 14.29 7.84 87.66 0.69 14.97 16 7 O -0.57 -22.20 15.67 -3.04 -0.05 -22.24 16 8 C 0.10 1.83 6.94 85.63 0.59 2.42 16 9 N -0.28 -7.17 3.20 -351.47 -1.12 -8.29 16 10 C -0.03 -0.63 10.89 83.49 0.91 0.28 16 11 C -0.01 -0.24 6.88 41.59 0.29 0.05 16 12 C -0.09 -1.61 6.33 -11.54 -0.07 -1.68 16 13 C -0.14 -1.38 10.02 30.59 0.31 -1.08 16 14 C -0.17 -2.56 10.23 30.60 0.31 -2.24 16 15 N -0.31 -10.75 12.41 -48.60 -0.60 -11.35 16 16 N -0.11 -3.81 12.13 37.02 0.45 -3.36 16 17 N -0.73 -31.90 4.56 -322.93 -1.47 -33.38 16 18 C -0.23 -11.25 9.93 84.03 0.83 -10.41 16 19 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 20 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 21 N -0.97 -55.22 13.06 21.65 0.28 -54.94 16 22 Si 0.97 42.86 29.55 68.60 2.03 44.89 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.42 10.89 8.14 -92.71 -0.75 10.14 16 32 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.19 1.44 8.07 -2.39 -0.02 1.42 16 34 H 0.24 1.89 7.45 -2.91 -0.02 1.87 16 35 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.11 0.78 7.23 -2.39 -0.02 0.76 16 37 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.37 18.19 7.80 -92.71 -0.72 17.47 16 41 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -77.19 353.96 2.19 -74.99 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.42 Total: 31.03 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.60 Total: 4.59 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -4.96 Total: -133.26 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -77.19 2.19 -74.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491478604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.332 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds