Wall clock time and date at job start Fri Apr 10 2020 17:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47098 * 2 1 4 4 C 1.52992 * 109.47013 * 119.99708 * 2 1 3 5 5 N 1.46506 * 109.47161 * 174.99834 * 4 2 1 6 6 C 1.34773 * 119.99968 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00360 * 359.73034 * 6 5 4 8 8 C 1.50706 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.46493 * 109.47128 * 179.72554 * 8 6 5 10 10 C 1.35319 * 125.86630 * 125.00079 * 9 8 6 11 11 C 1.35348 * 106.17583 * 179.97438 * 10 9 8 12 12 C 1.50699 * 126.75066 * 180.02562 * 11 10 9 13 13 C 1.53001 * 117.50126 * 343.62458 * 12 11 10 14 14 C 1.52994 * 60.00121 * 252.50884 * 13 12 11 15 15 N 1.33770 * 106.49824 * 0.02562 * 11 10 9 16 16 N 1.28632 * 108.88194 * 359.72985 * 15 11 10 17 17 N 1.46495 * 109.47391 * 240.00047 * 2 1 3 18 18 C 1.36939 * 120.00111 * 84.99982 * 17 2 1 19 19 H 1.08004 * 119.99680 * 359.97438 * 18 17 2 20 20 C 1.38810 * 120.00065 * 180.02562 * 18 17 2 21 21 N 1.31616 * 120.00234 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00211 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47122 * 59.99356 * 22 20 18 24 24 H 1.48495 * 109.47425 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46880 * 299.99567 * 22 20 18 26 26 H 1.08989 * 109.46793 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46870 * 299.99926 * 1 2 3 28 28 H 1.09001 * 109.46894 * 60.00082 * 1 2 3 29 29 H 1.09004 * 109.47116 * 55.00469 * 4 2 1 30 30 H 1.08998 * 109.47794 * 295.00381 * 4 2 1 31 31 H 0.96998 * 119.99507 * 0.02562 * 5 4 2 32 32 H 1.09001 * 109.46564 * 299.73030 * 8 6 5 33 33 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 34 34 H 1.07997 * 126.91084 * 0.02562 * 10 9 8 35 35 H 1.09002 * 115.54752 * 129.33553 * 12 11 10 36 36 H 1.09003 * 117.49734 * 0.02562 * 13 12 11 37 37 H 1.09007 * 117.49762 * 145.01875 * 13 12 11 38 38 H 1.09003 * 117.50335 * 252.50731 * 14 13 12 39 39 H 1.08998 * 117.51815 * 107.47844 * 14 13 12 40 40 H 0.97001 * 119.99963 * 265.00524 * 17 2 1 41 41 H 0.97003 * 120.00653 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1731 -1.4282 2.1912 7 8 3.5705 -1.8784 3.1426 8 6 5.6751 -1.5359 2.1312 9 7 6.1639 -2.2202 3.3307 10 6 6.9457 -3.3245 3.3504 11 6 7.1563 -3.6142 4.6556 12 6 7.9689 -4.7579 5.2057 13 6 8.3091 -5.9054 4.2526 14 6 7.2714 -6.1111 5.3579 15 7 6.5013 -2.6855 5.3613 16 7 5.9281 -1.8713 4.5470 17 7 2.0184 -0.6906 -1.1961 18 6 2.1492 -0.0074 -2.3757 19 1 1.8920 1.0404 -2.4243 20 6 2.6115 -0.6619 -3.5092 21 7 2.9246 -1.9389 -3.4501 22 14 2.7907 0.2701 -5.1182 23 1 3.7466 1.3919 -4.9366 24 1 3.2996 -0.6483 -6.1683 25 1 1.4686 0.8078 -5.5286 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7198 1.2951 30 1 1.7516 -0.1583 2.1370 31 1 3.9824 -0.4622 0.4319 32 1 5.9635 -2.1031 1.2462 33 1 6.1092 -0.5374 2.0800 34 1 7.3259 -3.8654 2.4964 35 1 8.7131 -4.4881 5.9550 36 1 7.9455 -5.8329 3.2276 37 1 9.2775 -6.3908 4.3747 38 1 7.5569 -6.7319 6.2072 39 1 6.2247 -6.1740 5.0606 40 1 2.2491 -1.6317 -1.1526 41 1 3.2480 -2.3963 -4.2421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491478605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:27 Heat of formation + Delta-G solvation = 101.651539 kcal Electronic energy + Delta-G solvation = -22781.676550 eV Core-core repulsion = 19314.369460 eV Total energy + Delta-G solvation = -3467.307090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.30079 -39.59090 -37.48608 -36.49561 -34.42165 -33.74254 -32.01383 -30.76485 -29.28086 -28.58430 -25.69716 -24.19960 -23.77816 -22.87677 -21.96387 -20.84514 -20.37410 -19.94074 -17.82271 -17.58465 -17.17329 -16.24590 -15.71780 -15.52799 -15.35291 -14.90073 -14.66242 -14.56314 -14.01416 -13.75689 -13.12511 -13.02166 -12.53311 -12.32988 -12.20486 -11.99982 -11.78979 -11.59091 -11.47337 -11.27532 -10.95247 -10.92060 -10.85827 -10.48110 -10.45174 -10.36689 -10.14565 -9.82724 -9.68023 -9.09737 -9.07678 -8.86062 -7.16791 -5.93018 -3.23761 1.53219 2.11990 2.48046 2.57470 3.26424 3.32632 3.38545 3.39009 3.56402 4.08911 4.44022 4.45111 4.63510 4.65254 4.69793 4.74359 4.75193 5.02620 5.21563 5.32094 5.36398 5.39502 5.46546 5.59505 5.69109 5.81217 5.86283 5.93715 5.98297 6.07884 6.08057 6.18297 6.43478 6.46095 6.59420 6.68197 6.92632 7.55119 7.62466 8.23651 8.25650 8.54199 9.36526 9.90132 10.25985 11.28691 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019390 B = 0.003064 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.732696 B = 9134.738775 C =10001.075538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.055 0.945 4 C 0.117 3.883 5 N -0.704 5.704 6 C 0.499 3.501 7 O -0.524 6.524 8 C 0.094 3.906 9 N -0.277 5.277 10 C -0.047 4.047 11 C 0.005 3.995 12 C -0.070 4.070 13 C -0.171 4.171 14 C -0.166 4.166 15 N -0.268 5.268 16 N -0.052 5.052 17 N -0.724 5.724 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.009 4.009 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.413 0.587 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.189 0.811 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.385 0.615 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.951 -3.450 11.386 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.073 0.927 4 C -0.007 4.007 5 N -0.357 5.357 6 C 0.281 3.719 7 O -0.400 6.400 8 C -0.031 4.031 9 N -0.070 5.070 10 C -0.197 4.197 11 C -0.132 4.132 12 C -0.090 4.090 13 C -0.208 4.208 14 C -0.203 4.203 15 N -0.135 5.135 16 N -0.032 5.032 17 N -0.367 5.367 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.249 0.751 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.206 0.794 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.219 0.781 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.782 -2.603 12.803 15.743 hybrid contribution 0.730 -0.375 -2.370 2.508 sum 9.512 -2.978 10.433 14.429 Atomic orbital electron populations 1.22361 0.98149 1.01358 1.00512 1.20518 0.92802 0.95772 0.85968 0.92690 1.21753 0.78574 1.01402 0.99019 1.45841 1.08673 1.58330 1.22864 1.20103 0.88557 0.79630 0.83593 1.90807 1.69194 1.47309 1.32663 1.21944 0.94866 1.01256 0.85059 1.46727 1.33010 1.19875 1.07367 1.23269 1.02208 0.93507 1.00687 1.20957 1.03135 0.99225 0.89876 1.19966 1.00678 0.85639 1.02710 1.23024 1.00601 1.01079 0.96112 1.23004 0.98529 0.97874 1.00940 1.75058 1.09682 1.03196 1.25571 1.78426 1.17984 1.20756 0.85993 1.42478 1.78137 1.10796 1.05284 1.19181 1.37145 0.93906 0.87346 0.91111 1.24742 1.01908 0.95899 0.98027 1.69644 1.50447 1.08626 1.29159 0.86282 0.77857 0.78582 0.83502 1.21217 1.21706 1.21243 0.93181 0.94089 0.92214 0.91647 0.91471 0.75062 0.84381 0.85253 0.79376 0.86155 0.88501 0.87997 0.88144 0.88588 0.78131 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.16 2.79 3.05 -67.93 -0.21 2.58 16 3 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 4 C 0.12 1.85 5.23 -4.04 -0.02 1.83 16 5 N -0.70 -10.27 5.39 -60.29 -0.32 -10.59 16 6 C 0.50 7.42 7.84 -10.98 -0.09 7.33 16 7 O -0.52 -10.08 15.69 5.56 0.09 -10.00 16 8 C 0.09 1.01 6.94 -5.19 -0.04 0.98 16 9 N -0.28 -3.75 3.19 -62.44 -0.20 -3.95 16 10 C -0.05 -0.54 10.89 -17.04 -0.19 -0.73 16 11 C 0.01 0.07 6.88 -82.78 -0.57 -0.50 16 12 C -0.07 -0.68 6.33 -91.77 -0.58 -1.26 16 13 C -0.17 -1.24 10.02 -26.73 -0.27 -1.51 16 14 C -0.17 -1.44 10.23 -26.73 -0.27 -1.71 16 15 N -0.27 -4.44 12.41 33.29 0.41 -4.03 16 16 N -0.05 -0.88 12.14 60.35 0.73 -0.15 16 17 N -0.72 -15.88 4.56 -53.43 -0.24 -16.13 16 18 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 19 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -25.82 13.06 55.49 0.72 -25.10 16 22 Si 0.91 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.05 0.85 8.14 -51.94 -0.42 0.42 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.41 5.77 8.14 -40.82 -0.33 5.44 16 32 H 0.14 1.06 8.07 -51.93 -0.42 0.64 16 33 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.19 1.44 7.46 -52.49 -0.39 1.05 16 35 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.10 0.67 7.23 -51.93 -0.38 0.29 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.38 9.15 7.80 -40.82 -0.32 8.83 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -33.22 353.99 -6.65 -39.87 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.03 Total: 10.87 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.12 Total: -1.92 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 1.10 Total: -59.94 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.22 -6.65 -39.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491478605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.524 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds