Wall clock time and date at job start Fri Apr 10 2020 17:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47130 * 2 1 4 4 C 1.34805 * 126.59398 * 125.27746 * 3 2 1 5 5 C 1.36599 * 106.84129 * 180.10771 * 4 3 2 6 6 C 1.47526 * 125.77563 * 179.89940 * 5 4 3 7 7 O 1.21589 * 119.99582 * 359.70765 * 6 5 4 8 8 N 1.34771 * 119.99929 * 179.71509 * 6 5 4 9 9 C 1.47020 * 125.65393 * 359.95572 * 8 6 5 10 10 C 1.54368 * 107.29315 * 178.94554 * 9 8 6 11 11 C 1.55159 * 102.92036 * 337.85855 * 10 9 8 12 12 H 1.08999 * 111.00743 * 277.36675 * 11 10 9 13 13 C 1.52993 * 111.00659 * 153.54509 * 11 10 9 14 14 N 1.46496 * 109.47551 * 178.18098 * 13 11 10 15 15 C 1.36934 * 120.00548 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99288 * 0.02562 * 15 14 13 17 17 C 1.38805 * 120.00389 * 180.02562 * 15 14 13 18 18 N 1.31624 * 120.00257 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.47427 * 125.64743 * 179.97438 * 8 6 5 24 24 N 1.34410 * 108.45587 * 359.63097 * 5 4 3 25 25 N 1.28759 * 109.52416 * 0.23049 * 24 5 4 26 26 H 1.09005 * 109.46992 * 300.00126 * 1 2 3 27 27 H 1.08998 * 109.47614 * 59.99971 * 1 2 3 28 28 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46677 * 240.00176 * 2 1 3 30 30 H 1.09002 * 109.47202 * 120.00276 * 2 1 3 31 31 H 1.07996 * 126.58377 * 359.96294 * 4 3 2 32 32 H 1.09002 * 109.88388 * 298.39753 * 9 8 6 33 33 H 1.09005 * 109.88005 * 59.40142 * 9 8 6 34 34 H 1.09000 * 110.75831 * 219.49646 * 10 9 8 35 35 H 1.09001 * 110.70732 * 96.20369 * 10 9 8 36 36 H 1.09004 * 109.46862 * 58.18296 * 13 11 10 37 37 H 1.09004 * 109.46998 * 298.18774 * 13 11 10 38 38 H 0.96999 * 119.99694 * 0.02562 * 14 13 11 39 39 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.36373 * 85.25362 * 23 8 6 41 41 H 1.08998 * 110.45921 * 322.97580 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8756 1.9305 0.8836 5 6 3.0508 3.2321 0.5081 6 6 3.9086 4.2189 1.1915 7 8 4.5325 3.8976 2.1844 8 7 4.0005 5.4763 0.7153 9 6 3.3046 5.9965 -0.4707 10 6 3.6904 7.4843 -0.6134 11 6 4.1359 7.8664 0.8229 12 1 3.2759 8.1081 1.4475 13 6 5.1344 9.0254 0.7974 14 7 5.4986 9.3866 2.1696 15 6 6.3859 10.4045 2.3972 16 1 6.8168 10.9413 1.5649 17 6 6.7314 10.7464 3.6973 18 7 7.5839 11.7251 3.9161 19 14 5.9855 9.8183 5.1367 20 1 4.7287 10.4871 5.5590 21 1 5.6894 8.4224 4.7256 22 1 6.9454 9.8077 6.2697 23 6 4.8158 6.5580 1.2972 24 7 2.3142 3.4603 -0.5928 25 7 1.6885 2.3844 -0.9225 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.3338 1.4370 1.7278 32 1 3.6192 5.4450 -1.3567 33 1 2.2266 5.9022 -0.3390 34 1 2.8301 8.0787 -0.9212 35 1 4.5143 7.6031 -1.3171 36 1 4.6808 9.8849 0.3037 37 1 6.0282 8.7229 0.2517 38 1 5.1119 8.9042 2.9169 39 1 7.8250 11.9642 4.8247 40 1 5.8384 6.5051 0.9237 41 1 4.8066 6.4987 2.3856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491842855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:12 Heat of formation + Delta-G solvation = 81.157125 kcal Electronic energy + Delta-G solvation = -23027.942865 eV Core-core repulsion = 19559.747070 eV Total energy + Delta-G solvation = -3468.195794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48250 -39.78125 -37.59299 -35.84482 -34.78005 -32.30447 -31.70263 -30.92903 -30.34674 -28.80616 -26.04316 -25.00681 -23.94404 -22.56833 -22.08755 -21.56708 -20.22604 -19.63559 -17.96073 -17.41388 -16.69021 -16.48637 -16.10839 -15.45244 -15.07830 -14.90561 -14.50772 -14.29417 -13.82192 -13.60831 -13.41580 -12.98575 -12.90636 -12.70853 -12.59410 -12.43471 -12.30186 -12.06772 -11.81109 -11.66478 -11.33879 -10.89829 -10.72370 -10.63430 -10.51254 -10.40704 -10.13237 -10.05347 -9.56051 -9.54367 -8.85814 -8.54958 -7.19351 -5.72550 -3.08189 0.84267 1.53007 1.66651 2.94526 3.20912 3.43336 3.47598 3.50880 3.83297 3.94581 4.22280 4.34215 4.48491 4.62361 4.64393 4.73459 4.82393 4.86363 4.93272 5.03787 5.16340 5.34974 5.41037 5.49204 5.58169 5.59432 5.77764 5.82969 5.89254 5.96623 6.01168 6.09484 6.21584 6.24575 6.41418 6.65848 6.77472 7.49402 7.66112 8.03128 8.11415 8.46353 9.25306 9.97872 10.17221 11.45771 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.003044 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.534887 B = 9196.001199 C = 9833.645405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.362 5.362 4 C 0.092 3.908 5 C -0.094 4.094 6 C 0.613 3.387 7 O -0.541 6.541 8 N -0.603 5.603 9 C 0.111 3.889 10 C -0.126 4.126 11 C -0.111 4.111 12 H 0.084 0.916 13 C 0.169 3.831 14 N -0.757 5.757 15 C -0.243 4.243 16 H 0.091 0.909 17 C 0.004 3.996 18 N -0.935 5.935 19 Si 0.883 3.117 20 H -0.284 1.284 21 H -0.275 1.275 22 H -0.291 1.291 23 C 0.114 3.886 24 N -0.201 5.201 25 N -0.068 5.068 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.204 0.796 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.077 0.923 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.192 -25.734 -10.599 31.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.148 5.148 4 C -0.065 4.065 5 C -0.233 4.233 6 C 0.399 3.601 7 O -0.417 6.417 8 N -0.335 5.335 9 C -0.012 4.012 10 C -0.164 4.164 11 C -0.130 4.130 12 H 0.103 0.897 13 C 0.042 3.958 14 N -0.403 5.403 15 C -0.373 4.373 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.583 5.583 19 Si 0.713 3.287 20 H -0.211 1.211 21 H -0.201 1.201 22 H -0.217 1.217 23 C -0.007 4.007 24 N -0.075 5.075 25 N -0.048 5.048 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.221 0.779 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.194 0.806 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.526 -25.501 -11.343 31.937 hybrid contribution 0.044 -1.039 1.997 2.252 sum -15.482 -26.540 -9.345 32.115 Atomic orbital electron populations 1.22089 0.92682 1.03714 1.04099 1.22042 0.96920 0.76193 1.05144 1.50609 1.31571 1.12384 1.20216 1.23379 0.93057 0.94045 0.96007 1.21436 1.07746 0.94894 0.99261 1.16356 0.80546 0.80210 0.82970 1.90830 1.46677 1.78499 1.25737 1.48296 1.46383 1.09648 1.29166 1.22108 0.97258 0.94290 0.87581 1.22699 1.02247 0.94181 0.97295 1.22645 0.99512 0.94671 0.96183 0.89721 1.20572 0.94315 0.93004 0.87934 1.42734 1.54325 1.41521 1.01687 1.19046 1.16823 1.07701 0.93752 0.89169 1.24669 0.99216 0.98303 0.96960 1.69706 1.37148 1.31310 1.20100 0.86567 0.78768 0.79959 0.83417 1.21116 1.20123 1.21721 1.22399 0.94530 0.84188 0.99617 1.74749 1.04711 1.17842 1.10148 1.81964 1.20581 0.90399 1.11844 0.91670 0.90671 0.89855 0.88315 0.87663 0.77879 0.90938 0.90881 0.89798 0.90166 0.94826 0.95130 0.80625 0.93091 0.90517 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.12 37.16 0.38 -0.18 16 2 C 0.12 0.40 7.26 -4.04 -0.03 0.38 16 3 N -0.36 -2.92 3.69 -61.06 -0.23 -3.15 16 4 C 0.09 0.85 11.27 -16.84 -0.19 0.66 16 5 C -0.09 -1.19 6.85 -83.54 -0.57 -1.76 16 6 C 0.61 9.48 7.85 -12.48 -0.10 9.38 16 7 O -0.54 -9.81 17.12 5.29 0.09 -9.72 16 8 N -0.60 -8.98 3.33 -171.73 -0.57 -9.55 16 9 C 0.11 1.36 5.52 -3.04 -0.02 1.34 16 10 C -0.13 -1.49 6.42 -24.87 -0.16 -1.65 16 11 C -0.11 -1.68 3.07 -88.48 -0.27 -1.95 16 12 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 13 C 0.17 3.19 5.71 -4.05 -0.02 3.17 16 14 N -0.76 -18.12 5.30 -59.91 -0.32 -18.43 16 15 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 16 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 17 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 18 N -0.93 -29.80 13.97 55.49 0.78 -29.02 16 19 Si 0.88 22.70 27.74 -169.99 -4.71 17.98 16 20 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 22 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 23 C 0.11 1.86 6.23 -2.54 -0.02 1.85 16 24 N -0.20 -2.55 9.77 32.85 0.32 -2.23 16 25 N -0.07 -0.76 13.65 60.35 0.82 0.06 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.11 0.09 8.08 -51.93 -0.42 -0.33 16 31 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.07 0.86 7.73 -51.93 -0.40 0.46 16 33 H 0.07 0.88 7.61 -51.93 -0.40 0.49 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.58 8.04 -51.93 -0.42 0.17 16 38 H 0.36 8.54 5.49 -40.82 -0.22 8.31 16 39 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 40 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 41 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -36.17 343.97 -5.97 -42.13 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.08 Total: 2.61 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.25 Total: 4.12 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.81 Total: -62.31 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.71 Total: 17.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.17 -5.97 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491842855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.292 kcal (2) G-P(sol) polarization free energy of solvation -36.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds