Wall clock time and date at job start Fri Apr 10 2020 17:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47130 * 2 1 4 4 C 1.34805 * 126.59398 * 125.27746 * 3 2 1 5 5 C 1.36599 * 106.84129 * 180.10771 * 4 3 2 6 6 C 1.47526 * 125.77563 * 179.89940 * 5 4 3 7 7 O 1.21589 * 119.99582 * 359.70765 * 6 5 4 8 8 N 1.34771 * 119.99929 * 179.71509 * 6 5 4 9 9 C 1.47020 * 125.65393 * 359.95572 * 8 6 5 10 10 C 1.54368 * 107.29315 * 178.94554 * 9 8 6 11 11 C 1.55159 * 102.92036 * 337.85855 * 10 9 8 12 12 H 1.08999 * 111.00743 * 277.36675 * 11 10 9 13 13 C 1.52993 * 111.00659 * 153.54509 * 11 10 9 14 14 N 1.46496 * 109.47551 * 178.18098 * 13 11 10 15 15 C 1.36934 * 120.00548 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99288 * 0.02562 * 15 14 13 17 17 C 1.38805 * 120.00389 * 180.02562 * 15 14 13 18 18 N 1.31624 * 120.00257 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.47427 * 125.64743 * 179.97438 * 8 6 5 24 24 N 1.34410 * 108.45587 * 359.63097 * 5 4 3 25 25 N 1.28759 * 109.52416 * 0.23049 * 24 5 4 26 26 H 1.09005 * 109.46992 * 300.00126 * 1 2 3 27 27 H 1.08998 * 109.47614 * 59.99971 * 1 2 3 28 28 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46677 * 240.00176 * 2 1 3 30 30 H 1.09002 * 109.47202 * 120.00276 * 2 1 3 31 31 H 1.07996 * 126.58377 * 359.96294 * 4 3 2 32 32 H 1.09002 * 109.88388 * 298.39753 * 9 8 6 33 33 H 1.09005 * 109.88005 * 59.40142 * 9 8 6 34 34 H 1.09000 * 110.75831 * 219.49646 * 10 9 8 35 35 H 1.09001 * 110.70732 * 96.20369 * 10 9 8 36 36 H 1.09004 * 109.46862 * 58.18296 * 13 11 10 37 37 H 1.09004 * 109.46998 * 298.18774 * 13 11 10 38 38 H 0.96999 * 119.99694 * 0.02562 * 14 13 11 39 39 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 40 40 H 1.09000 * 110.36373 * 85.25362 * 23 8 6 41 41 H 1.08998 * 110.45921 * 322.97580 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8756 1.9305 0.8836 5 6 3.0508 3.2321 0.5081 6 6 3.9086 4.2189 1.1915 7 8 4.5325 3.8976 2.1844 8 7 4.0005 5.4763 0.7153 9 6 3.3046 5.9965 -0.4707 10 6 3.6904 7.4843 -0.6134 11 6 4.1359 7.8664 0.8229 12 1 3.2759 8.1081 1.4475 13 6 5.1344 9.0254 0.7974 14 7 5.4986 9.3866 2.1696 15 6 6.3859 10.4045 2.3972 16 1 6.8168 10.9413 1.5649 17 6 6.7314 10.7464 3.6973 18 7 7.5839 11.7251 3.9161 19 14 5.9855 9.8183 5.1367 20 1 4.7287 10.4871 5.5590 21 1 5.6894 8.4224 4.7256 22 1 6.9454 9.8077 6.2697 23 6 4.8158 6.5580 1.2972 24 7 2.3142 3.4603 -0.5928 25 7 1.6885 2.3844 -0.9225 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.3338 1.4370 1.7278 32 1 3.6192 5.4450 -1.3567 33 1 2.2266 5.9022 -0.3390 34 1 2.8301 8.0787 -0.9212 35 1 4.5143 7.6031 -1.3171 36 1 4.6808 9.8849 0.3037 37 1 6.0282 8.7229 0.2517 38 1 5.1119 8.9042 2.9169 39 1 7.8250 11.9642 4.8247 40 1 5.8384 6.5051 0.9237 41 1 4.8066 6.4987 2.3856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491842855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:12 Heat of formation + Delta-G solvation = 54.610500 kcal Electronic energy + Delta-G solvation = -23029.094013 eV Core-core repulsion = 19559.747070 eV Total energy + Delta-G solvation = -3469.346942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.26379 -40.93749 -38.84837 -36.62649 -36.32314 -34.02981 -32.55618 -32.31342 -31.21231 -30.09465 -27.50313 -25.53358 -25.35707 -23.82072 -23.13321 -22.61052 -21.54877 -20.62614 -19.64555 -18.63257 -17.60746 -17.41807 -17.07125 -16.57851 -16.46492 -15.89276 -15.69334 -15.53151 -15.13187 -14.87507 -14.61699 -14.13998 -14.06563 -13.77468 -13.65281 -13.49971 -13.35724 -13.14292 -13.00155 -12.80386 -12.55705 -12.18361 -12.09498 -11.92915 -11.87255 -11.72555 -11.59476 -11.32741 -11.30754 -10.97325 -10.40870 -9.71199 -9.28451 -8.02205 -5.34942 0.11923 0.57864 1.09758 1.38394 1.40460 1.47461 1.86513 2.14475 2.48270 3.05621 3.28899 3.33151 3.46295 3.65158 3.73087 3.83584 3.93265 3.99160 4.03898 4.27504 4.31178 4.33433 4.42510 4.54089 4.56703 4.68928 4.74250 4.85349 4.90624 4.92960 5.01907 5.08204 5.17363 5.22779 5.27025 5.42275 5.46726 5.77232 6.22041 6.37791 6.78135 7.02274 7.08609 7.85330 8.02787 9.19281 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030213 B = 0.003044 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.534887 B = 9196.001199 C = 9833.645405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.348 5.348 4 C 0.110 3.890 5 C -0.123 4.123 6 C 0.609 3.391 7 O -0.577 6.577 8 N -0.606 5.606 9 C 0.116 3.884 10 C -0.113 4.113 11 C -0.100 4.100 12 H 0.087 0.913 13 C 0.167 3.833 14 N -0.761 5.761 15 C -0.230 4.230 16 H 0.062 0.938 17 C -0.063 4.063 18 N -0.983 5.983 19 Si 0.950 3.050 20 H -0.276 1.276 21 H -0.258 1.258 22 H -0.296 1.296 23 C 0.115 3.885 24 N -0.216 5.216 25 N -0.086 5.086 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.234 0.766 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.031 0.969 38 H 0.364 0.636 39 H 0.258 0.742 40 H 0.067 0.933 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.170 -28.545 -11.131 35.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.133 5.133 4 C -0.048 4.048 5 C -0.263 4.263 6 C 0.397 3.603 7 O -0.457 6.457 8 N -0.337 5.337 9 C -0.006 4.006 10 C -0.152 4.152 11 C -0.120 4.120 12 H 0.105 0.895 13 C 0.041 3.959 14 N -0.407 5.407 15 C -0.361 4.361 16 H 0.080 0.920 17 C -0.255 4.255 18 N -0.634 5.634 19 Si 0.778 3.222 20 H -0.202 1.202 21 H -0.183 1.183 22 H -0.222 1.222 23 C -0.007 4.007 24 N -0.090 5.090 25 N -0.066 5.066 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.128 0.872 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.251 0.749 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.197 0.803 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.568 -28.356 -11.951 35.433 hybrid contribution 0.639 -0.264 2.045 2.158 sum -16.929 -28.620 -9.906 34.696 Atomic orbital electron populations 1.22081 0.92577 1.04971 1.02653 1.22584 0.97005 0.73922 1.07706 1.50949 1.30327 1.13287 1.18731 1.23797 0.92008 0.92931 0.96091 1.21235 1.09013 0.95701 1.00337 1.16756 0.80340 0.80570 0.82619 1.90793 1.48320 1.79208 1.27369 1.48377 1.46226 1.09407 1.29715 1.22184 0.97289 0.94364 0.86799 1.22712 1.03523 0.93971 0.94953 1.22474 0.98260 0.92491 0.98733 0.89501 1.20741 0.95288 0.94618 0.85273 1.42790 1.53471 1.40400 1.04006 1.19059 1.16404 1.07786 0.92883 0.92044 1.25456 1.00347 0.99701 0.99968 1.69875 1.39370 1.33558 1.20566 0.85477 0.77839 0.79439 0.79473 1.20231 1.18287 1.22241 1.22238 0.94667 0.85533 0.98281 1.74703 1.05098 1.18811 1.10384 1.81879 1.20897 0.90905 1.12928 0.92716 0.92468 0.87249 0.86642 0.84237 0.74949 0.90236 0.90355 0.87325 0.89232 0.94094 0.95123 0.80326 0.93364 0.91425 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.12 71.98 0.73 0.06 16 2 C 0.11 0.37 7.26 86.38 0.63 0.99 16 3 N -0.35 -4.74 3.69 -347.11 -1.28 -6.02 16 4 C 0.11 1.77 11.27 83.85 0.95 2.72 16 5 C -0.12 -2.98 6.85 40.82 0.28 -2.70 16 6 C 0.61 18.56 7.85 86.69 0.68 19.24 16 7 O -0.58 -20.94 17.12 -4.00 -0.07 -21.01 16 8 N -0.61 -17.61 3.33 -815.49 -2.71 -20.32 16 9 C 0.12 2.64 5.52 86.74 0.48 3.12 16 10 C -0.11 -2.40 6.42 31.80 0.20 -2.19 16 11 C -0.10 -2.90 3.07 -9.41 -0.03 -2.93 16 12 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 13 C 0.17 6.13 5.71 86.38 0.49 6.62 16 14 N -0.76 -36.06 5.30 -343.47 -1.82 -37.88 16 15 C -0.23 -13.35 10.47 84.03 0.88 -12.47 16 16 H 0.06 3.85 8.06 -2.91 -0.02 3.83 16 17 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 18 N -0.98 -64.14 13.97 21.65 0.30 -63.84 16 19 Si 0.95 47.23 27.74 68.60 1.90 49.13 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.26 -11.93 6.52 99.48 0.65 -11.29 16 22 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 23 C 0.12 3.71 6.23 86.85 0.54 4.26 16 24 N -0.22 -5.22 9.77 -49.99 -0.49 -5.71 16 25 N -0.09 -1.79 13.65 37.02 0.51 -1.28 16 26 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.14 -0.40 8.08 -2.39 -0.02 -0.42 16 31 H 0.23 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.08 1.74 7.73 -2.39 -0.02 1.72 16 33 H 0.08 1.74 7.61 -2.38 -0.02 1.72 16 34 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 1.77 8.04 -2.39 -0.02 1.75 16 36 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.03 1.14 8.04 -2.39 -0.02 1.13 16 38 H 0.36 16.82 5.49 -92.71 -0.51 16.31 16 39 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 40 H 0.07 2.27 7.96 -2.39 -0.02 2.25 16 41 H 0.06 2.09 8.04 -2.39 -0.02 2.07 16 Total: -1.00 -80.44 343.97 3.10 -77.34 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.47 Total: 16.22 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.30 Total: 13.37 kcal Atomic # 7 Polarization: -129.56 SS G_CDS: -5.49 Total: -135.06 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.07 Total: -21.01 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.90 Total: 49.13 kcal Total: -80.44 3.10 -77.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491842855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.952 kcal (2) G-P(sol) polarization free energy of solvation -80.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds