Wall clock time and date at job start Fri Apr 10 2020 17:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47331 * 2 1 4 4 C 1.50697 * 109.46888 * 239.99657 * 2 1 3 5 5 O 1.21281 * 120.00514 * 239.99883 * 4 2 1 6 6 N 1.34778 * 119.99737 * 60.00745 * 4 2 1 7 7 C 1.46508 * 119.99915 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46919 * 185.65094 * 7 6 4 9 9 H 1.08996 * 110.00085 * 304.87107 * 8 7 6 10 10 C 1.54333 * 109.88024 * 65.96738 * 8 7 6 11 11 C 1.55161 * 102.93983 * 141.60839 * 10 8 7 12 12 C 1.55125 * 101.48430 * 324.33033 * 11 10 8 13 13 N 1.47017 * 109.88007 * 183.77046 * 8 7 6 14 14 C 1.36937 * 125.64585 * 61.60901 * 13 8 7 15 15 H 1.07999 * 120.00429 * 14.71774 * 14 13 8 16 16 C 1.38813 * 120.00166 * 194.70933 * 14 13 8 17 17 N 1.31624 * 119.99663 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00360 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46929 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47315 * 120.00287 * 18 16 14 21 21 H 1.48495 * 109.47358 * 240.00302 * 18 16 14 22 22 N 1.46507 * 109.46923 * 120.00196 * 2 1 3 23 23 C 1.34429 * 126.82306 * 34.99749 * 22 2 1 24 24 N 1.30828 * 108.07844 * 179.97438 * 23 22 2 25 25 C 1.33247 * 109.82879 * 359.97438 * 24 23 22 26 26 N 1.30715 * 108.94179 * 359.75692 * 25 24 23 27 27 H 1.08995 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46981 * 299.99953 * 1 2 3 29 29 H 1.09000 * 109.46810 * 59.99971 * 1 2 3 30 30 H 0.96996 * 120.00040 * 359.97438 * 6 4 2 31 31 H 1.08996 * 109.46769 * 65.65072 * 7 6 4 32 32 H 1.09000 * 109.47053 * 305.64997 * 7 6 4 33 33 H 1.08996 * 110.71821 * 259.97126 * 10 8 7 34 34 H 1.08997 * 110.71940 * 23.24542 * 10 8 7 35 35 H 1.09000 * 111.00534 * 82.57231 * 11 10 8 36 36 H 1.09000 * 110.99951 * 206.42279 * 11 10 8 37 37 H 1.09002 * 110.49741 * 278.45051 * 12 11 10 38 38 H 1.09004 * 110.34053 * 156.06197 * 12 11 10 39 39 H 0.97000 * 119.99888 * 179.97438 * 17 16 14 40 40 H 1.08004 * 125.96192 * 359.97438 * 23 22 2 41 41 H 1.08001 * 125.52931 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 2.1955 -0.9403 -3.6508 8 6 1.8047 -0.1417 -4.8959 9 1 0.7278 0.0258 -4.9086 10 6 2.5465 1.2117 -4.9055 11 6 2.8950 1.4062 -6.4049 12 6 3.1891 -0.0519 -6.8454 13 7 2.2116 -0.8711 -6.1058 14 6 1.7617 -2.1089 -6.4805 15 1 0.8852 -2.5300 -6.0107 16 6 2.4321 -2.8225 -7.4646 17 7 3.5005 -2.3094 -8.0370 18 14 1.8179 -4.5107 -7.9764 19 1 0.6082 -4.8574 -7.1878 20 1 1.4787 -4.4968 -9.4221 21 1 2.8782 -5.5199 -7.7265 22 7 2.0183 -0.6907 1.1962 23 6 1.4558 -1.7519 1.7999 24 7 2.1937 -2.0701 2.8323 25 6 3.2315 -1.2390 2.9194 26 7 3.1708 -0.3798 1.9361 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.1489 0.5385 -2.5435 31 1 1.7522 -1.9347 -3.7029 32 1 3.2808 -1.0285 -3.6014 33 1 1.8945 2.0113 -4.5543 34 1 3.4530 1.1588 -4.3026 35 1 2.0482 1.8200 -6.9524 36 1 3.7785 2.0337 -6.5224 37 1 4.2055 -0.3355 -6.5724 38 1 3.0396 -0.1607 -7.9196 39 1 3.9692 -2.8082 -8.7244 40 1 0.5522 -2.2542 1.4872 41 1 4.0007 -1.2727 3.6768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493097932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:14 Heat of formation + Delta-G solvation = 58.835740 kcal Electronic energy + Delta-G solvation = -23590.773201 eV Core-core repulsion = 20121.609479 eV Total energy + Delta-G solvation = -3469.163722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.11858 -40.98562 -39.31916 -36.06707 -35.87779 -34.42317 -32.39328 -31.62141 -31.15484 -29.99680 -26.87579 -26.33949 -25.35139 -23.19678 -22.84460 -22.04020 -21.40912 -21.05475 -19.15876 -18.48165 -18.11168 -17.22586 -16.72013 -16.61821 -16.32945 -16.05857 -15.67407 -15.51425 -15.20896 -14.83280 -14.67295 -13.99703 -13.73899 -13.65888 -13.40595 -13.36578 -13.29141 -13.01206 -12.87048 -12.70766 -12.48847 -11.99423 -11.89549 -11.74828 -11.52852 -11.48038 -11.41308 -11.06821 -10.80109 -10.71164 -10.55393 -10.18269 -8.87839 -7.90496 -5.28097 0.56461 1.20301 1.40956 1.42872 1.45052 1.53853 1.97663 2.11581 2.47802 3.29675 3.35939 3.45115 3.53494 3.76069 3.80452 3.93225 3.97389 3.97872 4.25731 4.27213 4.43813 4.52667 4.62944 4.69448 4.71868 4.94045 4.99296 5.07787 5.13115 5.18575 5.24244 5.30541 5.45330 5.46621 5.55472 5.65112 5.76808 5.78892 6.21308 6.44649 7.06359 7.07062 7.12883 7.74783 8.40237 9.20607 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.003648 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.415355 B = 7673.958977 C = 8447.101203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.153 0.847 4 C 0.495 3.505 5 O -0.585 6.585 6 N -0.693 5.693 7 C 0.130 3.870 8 C 0.149 3.851 9 H 0.063 0.937 10 C -0.114 4.114 11 C -0.134 4.134 12 C 0.172 3.828 13 N -0.612 5.612 14 C -0.237 4.237 15 H 0.081 0.919 16 C -0.061 4.061 17 N -0.947 5.947 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.299 1.299 22 N -0.367 5.367 23 C 0.268 3.732 24 N -0.575 5.575 25 C 0.193 3.807 26 N -0.349 5.349 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.421 0.579 31 H 0.037 0.963 32 H 0.029 0.971 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.079 0.921 37 H -0.013 1.013 38 H 0.036 0.964 39 H 0.247 0.753 40 H 0.246 0.754 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.591 11.535 16.631 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.170 0.830 4 C 0.280 3.720 5 O -0.465 6.465 6 N -0.346 5.346 7 C 0.003 3.997 8 C 0.041 3.959 9 H 0.080 0.920 10 C -0.151 4.151 11 C -0.172 4.172 12 C 0.047 3.953 13 N -0.336 5.336 14 C -0.367 4.367 15 H 0.099 0.901 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.216 1.216 21 H -0.226 1.226 22 N -0.158 5.158 23 C -0.029 4.029 24 N -0.302 5.302 25 C -0.110 4.110 26 N -0.176 5.176 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.138 0.862 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.005 0.995 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.262 0.738 41 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.621 11.037 16.563 21.690 hybrid contribution 0.263 -1.334 -0.964 1.666 sum -8.358 9.703 15.599 20.183 Atomic orbital electron populations 1.22291 0.86397 1.05486 1.07240 1.21515 0.98868 0.97699 0.78096 0.83002 1.21352 0.80162 0.84576 0.85944 1.90783 1.39688 1.28774 1.87244 1.45699 1.52730 1.32116 1.04046 1.21722 0.97271 0.96134 0.84540 1.21385 0.98238 0.91708 0.84528 0.91981 1.22629 1.00342 0.95801 0.96378 1.22904 1.01670 0.96126 0.96514 1.21319 0.90117 0.88188 0.95698 1.44789 1.49876 1.17485 1.21446 1.19365 1.07269 0.92636 1.17394 0.90124 1.25693 0.97348 1.01726 1.00716 1.70153 1.21370 1.38481 1.29491 0.85136 0.77523 0.79833 0.77646 1.18786 1.21567 1.22598 1.50247 1.18355 1.25085 1.22076 1.26549 0.99755 0.87372 0.89181 1.70567 1.08080 1.29320 1.22283 1.26587 0.97564 0.89579 0.97232 1.77951 1.03814 1.26905 1.08924 0.90557 0.88070 0.86222 0.74019 0.94498 0.95267 0.87030 0.92164 0.90758 0.90260 0.99473 0.94577 0.94410 0.73836 0.74087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.75 71.98 0.63 -0.44 16 2 C 0.14 2.39 3.77 44.24 0.17 2.55 16 3 H 0.15 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.49 13.08 7.22 87.66 0.63 13.71 16 5 O -0.59 -23.17 16.41 -3.03 -0.05 -23.22 16 6 N -0.69 -16.19 5.24 -463.05 -2.42 -18.61 16 7 C 0.13 4.63 5.09 86.38 0.44 5.07 16 8 C 0.15 5.18 3.20 45.34 0.15 5.32 16 9 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 10 C -0.11 -3.12 6.17 31.79 0.20 -2.92 16 11 C -0.13 -4.37 7.10 32.06 0.23 -4.14 16 12 C 0.17 8.17 5.42 86.93 0.47 8.65 16 13 N -0.61 -29.52 3.13 -667.83 -2.09 -31.61 16 14 C -0.24 -12.85 9.73 84.03 0.82 -12.03 16 15 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 16 C -0.06 -3.45 5.47 84.86 0.46 -2.99 16 17 N -0.95 -56.88 10.57 21.65 0.23 -56.65 16 18 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 21 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 22 N -0.37 -8.45 3.04 -335.01 -1.02 -9.46 16 23 C 0.27 5.84 11.77 180.36 2.12 7.96 16 24 N -0.57 -14.76 11.19 -204.00 -2.28 -17.04 16 25 C 0.19 4.68 13.03 180.76 2.36 7.04 16 26 N -0.35 -9.47 12.70 -61.24 -0.78 -10.24 16 27 H 0.08 0.56 7.22 -2.39 -0.02 0.55 16 28 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.12 0.25 7.56 -2.39 -0.02 0.23 16 30 H 0.42 5.72 7.80 -92.71 -0.72 5.00 16 31 H 0.04 1.55 7.88 -2.39 -0.02 1.53 16 32 H 0.03 1.26 8.04 -2.39 -0.02 1.24 16 33 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 1.72 7.79 -2.39 -0.02 1.70 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H -0.01 -0.69 8.06 -2.39 -0.02 -0.71 16 38 H 0.04 1.95 6.92 -2.38 -0.02 1.93 16 39 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.25 3.26 7.32 -2.91 -0.02 3.24 16 41 H 0.24 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -84.25 341.51 2.60 -81.65 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.31 Total: 9.60 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 8.67 Total: 27.78 kcal Atomic # 7 Polarization: -135.26 SS G_CDS: -8.36 Total: -143.62 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -84.25 2.60 -81.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493097932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.482 kcal (2) G-P(sol) polarization free energy of solvation -84.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds