Wall clock time and date at job start Fri Apr 10 2020 17:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99750 * 2 1 4 4 H 1.08003 * 120.00012 * 202.83901 * 3 2 1 5 5 C 1.38814 * 119.99885 * 22.84072 * 3 2 1 6 6 N 1.31612 * 120.00297 * 13.24485 * 5 3 2 7 7 Si 1.86803 * 119.99488 * 193.23966 * 5 3 2 8 8 H 1.48490 * 109.47477 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46858 * 120.00099 * 7 5 3 10 10 H 1.48503 * 109.46995 * 240.00053 * 7 5 3 11 11 C 1.46494 * 119.99989 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46927 * 90.00452 * 11 2 1 13 13 H 1.08994 * 110.88800 * 308.87601 * 12 11 2 14 14 C 1.55161 * 111.00650 * 72.80564 * 12 11 2 15 15 C 1.54327 * 103.02281 * 153.38004 * 14 12 11 16 16 N 1.47024 * 107.26583 * 338.13849 * 15 14 12 17 17 C 1.34779 * 125.64853 * 178.85050 * 16 15 14 18 18 O 1.21276 * 120.00132 * 179.69011 * 17 16 15 19 19 C 1.50706 * 119.99818 * 359.69081 * 17 16 15 20 20 N 1.46496 * 109.46976 * 179.97438 * 19 17 16 21 21 C 1.34431 * 126.82403 * 125.00009 * 20 19 17 22 22 N 1.30829 * 108.07805 * 179.97438 * 21 20 19 23 23 C 1.33239 * 109.82973 * 0.02562 * 22 21 20 24 24 N 1.30707 * 108.94487 * 0.26342 * 23 22 21 25 25 C 1.47422 * 108.70426 * 358.58665 * 16 15 14 26 26 H 1.08997 * 109.47554 * 275.13125 * 1 2 3 27 27 H 1.08999 * 109.47153 * 35.13381 * 1 2 3 28 28 H 1.09002 * 109.47213 * 155.12965 * 1 2 3 29 29 H 0.97004 * 120.00232 * 180.02562 * 6 5 3 30 30 H 1.09003 * 109.47605 * 330.00543 * 11 2 1 31 31 H 1.08999 * 109.47472 * 210.00502 * 11 2 1 32 32 H 1.08998 * 110.71610 * 271.93958 * 14 12 11 33 33 H 1.08999 * 110.71687 * 35.03084 * 14 12 11 34 34 H 1.08998 * 109.99323 * 218.66724 * 15 14 12 35 35 H 1.09002 * 109.78084 * 97.49732 * 15 14 12 36 36 H 1.09004 * 109.47260 * 60.00215 * 19 17 16 37 37 H 1.08994 * 109.47362 * 300.00292 * 19 17 16 38 38 H 1.08003 * 125.95905 * 0.02562 * 21 20 19 39 39 H 1.08004 * 125.52531 * 180.02562 * 23 22 21 40 40 H 1.08993 * 110.36620 * 143.19449 * 25 16 15 41 41 H 1.08998 * 110.36305 * 265.40853 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1662 1.2227 -0.3630 5 6 1.5371 2.3409 0.4666 6 7 0.4114 2.2613 1.1439 7 14 2.3108 4.0082 0.1335 8 1 3.5635 3.8265 -0.6429 9 1 1.3640 4.8466 -0.6448 10 1 2.6197 4.6772 1.4228 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4417 13 1 1.5295 -1.6978 -2.0212 14 6 3.5418 -0.8302 -2.1091 15 6 4.1395 -1.7678 -3.1794 16 7 3.8378 -3.1470 -2.7689 17 6 4.1716 -4.2604 -3.4510 18 8 3.8749 -5.3517 -3.0130 19 6 4.9136 -4.1493 -4.7580 20 7 5.1570 -5.4896 -5.2968 21 6 4.8098 -5.9443 -6.5133 22 7 5.2041 -7.1881 -6.6096 23 6 5.8038 -7.5609 -5.4797 24 7 5.7943 -6.5568 -4.6430 25 6 3.1151 -3.1106 -1.4844 26 1 -0.3634 0.0919 1.0235 27 1 -0.3633 0.8404 -0.5914 28 1 -0.3634 -0.9324 -0.4322 29 1 -0.0168 3.0685 1.4696 30 1 1.6084 -2.0282 0.5147 31 1 3.1499 -1.1382 0.5144 32 1 3.0959 0.0509 -2.5706 33 1 4.3018 -0.5408 -1.3834 34 1 5.2186 -1.6263 -3.2381 35 1 3.6832 -1.5609 -4.1474 36 1 5.8663 -3.6458 -4.5933 37 1 4.3171 -3.5751 -5.4668 38 1 4.2957 -5.3809 -7.2780 39 1 6.2255 -8.5360 -5.2853 40 1 2.3550 -3.8911 -1.4546 41 1 3.8114 -3.2280 -0.6541 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494179515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:29 Heat of formation + Delta-G solvation = 93.192446 kcal Electronic energy + Delta-G solvation = -23226.164455 eV Core-core repulsion = 19758.490551 eV Total energy + Delta-G solvation = -3467.673904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26123 -40.07193 -37.76028 -35.43764 -34.25685 -32.39559 -31.38618 -30.66256 -29.34299 -28.32209 -26.01840 -25.39065 -23.30545 -22.23361 -22.17275 -21.41900 -19.78690 -19.41856 -17.69362 -17.29090 -16.89273 -16.36049 -15.76981 -15.28903 -15.10685 -14.69916 -14.56201 -14.11052 -13.80054 -13.52729 -13.23738 -13.09310 -13.00391 -12.65935 -12.25250 -12.03017 -11.95753 -11.42527 -11.15172 -10.89552 -10.75839 -10.49604 -10.45833 -10.41074 -10.23339 -10.18014 -9.96393 -9.89910 -9.84742 -9.69597 -8.72925 -8.59513 -6.79579 -5.77253 -3.24353 1.40097 1.93101 2.36799 2.78790 2.85964 3.32141 3.38832 3.41214 4.03022 4.09559 4.24300 4.43214 4.60010 4.64308 4.76559 4.88980 5.01014 5.10979 5.28299 5.40736 5.42664 5.64879 5.78960 5.87138 5.96594 6.02371 6.09064 6.22316 6.25024 6.41518 6.43503 6.50788 6.59517 6.71229 6.84829 7.32255 7.36587 7.68805 7.75750 7.86172 7.95113 8.34410 9.18288 9.82230 10.31583 11.27542 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.037701 B = 0.002838 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.507411 B = 9862.083670 C =10274.504651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.253 4.253 4 H 0.071 0.929 5 C 0.001 3.999 6 N -0.906 5.906 7 Si 0.901 3.099 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.162 3.838 12 C -0.116 4.116 13 H 0.077 0.923 14 C -0.112 4.112 15 C 0.092 3.908 16 N -0.613 5.613 17 C 0.513 3.487 18 O -0.518 6.518 19 C 0.115 3.885 20 N -0.369 5.369 21 C 0.254 3.746 22 N -0.546 5.546 23 C 0.190 3.810 24 N -0.289 5.289 25 C 0.112 3.888 26 H 0.031 0.969 27 H 0.040 0.960 28 H -0.003 1.003 29 H 0.252 0.748 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.219 0.781 39 H 0.216 0.784 40 H 0.073 0.927 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.503 -10.317 -13.847 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.322 5.322 3 C -0.383 4.383 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.551 5.551 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.033 3.967 12 C -0.138 4.138 13 H 0.096 0.904 14 C -0.150 4.150 15 C -0.031 4.031 16 N -0.348 5.348 17 C 0.298 3.702 18 O -0.393 6.393 19 C -0.011 4.011 20 N -0.160 5.160 21 C -0.043 4.043 22 N -0.273 5.273 23 C -0.113 4.113 24 N -0.115 5.115 25 C -0.011 4.011 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.016 0.984 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.148 0.852 38 H 0.235 0.765 39 H 0.233 0.767 40 H 0.092 0.908 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.496 -10.997 -13.093 19.093 hybrid contribution 0.170 1.355 -0.270 1.392 sum 8.666 -9.643 -13.363 18.618 Atomic orbital electron populations 1.20795 0.82682 0.95330 0.99509 1.43875 1.01774 1.00574 1.85995 1.19217 0.98136 0.85390 1.35537 0.91157 1.25043 0.97915 0.98543 0.98278 1.70078 1.19493 1.27039 1.38522 0.86237 0.78494 0.84556 0.77545 1.20313 1.21701 1.21787 1.20619 0.96457 0.88685 0.90914 1.23199 0.97531 0.91260 1.01825 0.90442 1.22583 0.98202 0.97510 0.96724 1.22302 1.00078 0.81189 0.99536 1.48567 1.56850 1.05764 1.23634 1.19965 0.80563 0.83834 0.85803 1.90797 1.53700 1.25985 1.68790 1.21580 1.03077 0.80350 0.96097 1.50016 1.43468 1.10913 1.11645 1.26077 0.97648 0.91905 0.88650 1.70521 1.19296 1.11037 1.26440 1.26025 0.98435 0.99646 0.87167 1.78204 1.17790 0.95563 1.19971 1.22387 0.95432 0.99051 0.84206 0.95086 0.94131 0.98424 0.93803 0.94267 0.93110 0.89237 0.90524 0.91530 0.91523 0.86383 0.85233 0.76456 0.76728 0.90842 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 8.98 59.85 0.54 4.33 16 2 N -0.60 -13.93 2.91 -181.12 -0.53 -14.46 16 3 C -0.25 -6.39 9.16 -15.06 -0.14 -6.53 16 4 H 0.07 1.69 7.09 -52.48 -0.37 1.32 16 5 C 0.00 0.01 5.10 -17.43 -0.09 -0.07 16 6 N -0.91 -25.61 10.71 55.49 0.59 -25.01 16 7 Si 0.90 20.77 29.57 -169.99 -5.03 15.74 16 8 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 C 0.16 2.99 5.17 -4.05 -0.02 2.97 16 12 C -0.12 -1.75 3.26 -88.47 -0.29 -2.04 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C -0.11 -1.51 5.29 -24.89 -0.13 -1.64 16 15 C 0.09 0.91 6.49 -3.06 -0.02 0.89 16 16 N -0.61 -7.50 3.33 -170.52 -0.57 -8.06 16 17 C 0.51 6.61 7.89 -10.98 -0.09 6.52 16 18 O -0.52 -9.10 15.98 5.56 0.09 -9.01 16 19 C 0.12 0.96 6.22 -5.19 -0.03 0.93 16 20 N -0.37 -4.02 3.41 -63.81 -0.22 -4.24 16 21 C 0.25 2.33 12.63 -90.65 -1.14 1.18 16 22 N -0.55 -6.31 11.19 -15.83 -0.18 -6.49 16 23 C 0.19 2.21 13.03 -91.82 -1.20 1.01 16 24 N -0.29 -3.93 11.80 29.29 0.35 -3.59 16 25 C 0.11 1.55 6.37 -2.53 -0.02 1.53 16 26 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 27 H 0.04 1.02 7.34 -51.93 -0.38 0.64 16 28 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.05 0.94 7.87 -51.93 -0.41 0.54 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.08 1.08 7.75 -51.93 -0.40 0.68 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.13 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.22 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.22 1.71 8.06 -52.48 -0.42 1.29 16 40 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 41 H 0.07 0.95 8.04 -51.93 -0.42 0.54 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -35.01 342.60 -9.08 -44.09 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.13 Total: -3.22 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -2.63 Total: 9.08 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.55 Total: -61.85 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.01 -9.08 -44.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494179515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.286 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds