Wall clock time and date at job start Fri Apr 10 2020 17:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99750 * 2 1 4 4 H 1.08003 * 120.00012 * 202.83901 * 3 2 1 5 5 C 1.38814 * 119.99885 * 22.84072 * 3 2 1 6 6 N 1.31612 * 120.00297 * 13.24485 * 5 3 2 7 7 Si 1.86803 * 119.99488 * 193.23966 * 5 3 2 8 8 H 1.48490 * 109.47477 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46858 * 120.00099 * 7 5 3 10 10 H 1.48503 * 109.46995 * 240.00053 * 7 5 3 11 11 C 1.46494 * 119.99989 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46927 * 90.00452 * 11 2 1 13 13 H 1.08994 * 110.88800 * 308.87601 * 12 11 2 14 14 C 1.55161 * 111.00650 * 72.80564 * 12 11 2 15 15 C 1.54327 * 103.02281 * 153.38004 * 14 12 11 16 16 N 1.47024 * 107.26583 * 338.13849 * 15 14 12 17 17 C 1.34779 * 125.64853 * 178.85050 * 16 15 14 18 18 O 1.21276 * 120.00132 * 179.69011 * 17 16 15 19 19 C 1.50706 * 119.99818 * 359.69081 * 17 16 15 20 20 N 1.46496 * 109.46976 * 179.97438 * 19 17 16 21 21 C 1.34431 * 126.82403 * 125.00009 * 20 19 17 22 22 N 1.30829 * 108.07805 * 179.97438 * 21 20 19 23 23 C 1.33239 * 109.82973 * 0.02562 * 22 21 20 24 24 N 1.30707 * 108.94487 * 0.26342 * 23 22 21 25 25 C 1.47422 * 108.70426 * 358.58665 * 16 15 14 26 26 H 1.08997 * 109.47554 * 275.13125 * 1 2 3 27 27 H 1.08999 * 109.47153 * 35.13381 * 1 2 3 28 28 H 1.09002 * 109.47213 * 155.12965 * 1 2 3 29 29 H 0.97004 * 120.00232 * 180.02562 * 6 5 3 30 30 H 1.09003 * 109.47605 * 330.00543 * 11 2 1 31 31 H 1.08999 * 109.47472 * 210.00502 * 11 2 1 32 32 H 1.08998 * 110.71610 * 271.93958 * 14 12 11 33 33 H 1.08999 * 110.71687 * 35.03084 * 14 12 11 34 34 H 1.08998 * 109.99323 * 218.66724 * 15 14 12 35 35 H 1.09002 * 109.78084 * 97.49732 * 15 14 12 36 36 H 1.09004 * 109.47260 * 60.00215 * 19 17 16 37 37 H 1.08994 * 109.47362 * 300.00292 * 19 17 16 38 38 H 1.08003 * 125.95905 * 0.02562 * 21 20 19 39 39 H 1.08004 * 125.52531 * 180.02562 * 23 22 21 40 40 H 1.08993 * 110.36620 * 143.19449 * 25 16 15 41 41 H 1.08998 * 110.36305 * 265.40853 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1662 1.2227 -0.3630 5 6 1.5371 2.3409 0.4666 6 7 0.4114 2.2613 1.1439 7 14 2.3108 4.0082 0.1335 8 1 3.5635 3.8265 -0.6429 9 1 1.3640 4.8466 -0.6448 10 1 2.6197 4.6772 1.4228 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4417 13 1 1.5295 -1.6978 -2.0212 14 6 3.5418 -0.8302 -2.1091 15 6 4.1395 -1.7678 -3.1794 16 7 3.8378 -3.1470 -2.7689 17 6 4.1716 -4.2604 -3.4510 18 8 3.8749 -5.3517 -3.0130 19 6 4.9136 -4.1493 -4.7580 20 7 5.1570 -5.4896 -5.2968 21 6 4.8098 -5.9443 -6.5133 22 7 5.2041 -7.1881 -6.6096 23 6 5.8038 -7.5609 -5.4797 24 7 5.7943 -6.5568 -4.6430 25 6 3.1151 -3.1106 -1.4844 26 1 -0.3634 0.0919 1.0235 27 1 -0.3633 0.8404 -0.5914 28 1 -0.3634 -0.9324 -0.4322 29 1 -0.0168 3.0685 1.4696 30 1 1.6084 -2.0282 0.5147 31 1 3.1499 -1.1382 0.5144 32 1 3.0959 0.0509 -2.5706 33 1 4.3018 -0.5408 -1.3834 34 1 5.2186 -1.6263 -3.2381 35 1 3.6832 -1.5609 -4.1474 36 1 5.8663 -3.6458 -4.5933 37 1 4.3171 -3.5751 -5.4668 38 1 4.2957 -5.3809 -7.2780 39 1 6.2255 -8.5360 -5.2853 40 1 2.3550 -3.8911 -1.4546 41 1 3.8114 -3.2280 -0.6541 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494179515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:28 Heat of formation + Delta-G solvation = 71.499124 kcal Electronic energy + Delta-G solvation = -23227.105148 eV Core-core repulsion = 19758.490551 eV Total energy + Delta-G solvation = -3468.614597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.00202 -41.08016 -38.94855 -37.08755 -35.03420 -33.90098 -32.27584 -32.12394 -30.37434 -29.26807 -27.90004 -26.85381 -24.38013 -23.17410 -22.94322 -22.86112 -21.08140 -20.36208 -18.75244 -18.46011 -18.10900 -17.40727 -16.84551 -16.66477 -16.09159 -15.85872 -15.44628 -15.23636 -15.10955 -14.83821 -14.58893 -14.43637 -14.01336 -13.74842 -13.55237 -13.28730 -13.00224 -12.78810 -12.78397 -12.63486 -12.34481 -12.14417 -11.93039 -11.76361 -11.53458 -11.40474 -11.33279 -11.01388 -10.77822 -10.61006 -10.53227 -9.70460 -8.72368 -7.76469 -5.25106 0.67846 1.28507 1.45965 1.49983 1.51847 1.61166 1.94435 2.05518 2.55634 3.24730 3.37431 3.54056 3.57470 3.67737 3.76884 3.96349 4.06777 4.11377 4.15848 4.35945 4.41011 4.45842 4.62231 4.67019 4.85484 4.86842 4.89996 5.03997 5.13619 5.20009 5.25445 5.33999 5.43178 5.48495 5.52709 5.70518 5.75887 5.87458 6.38021 6.44956 7.00182 7.13139 7.20429 7.92451 8.37979 9.27582 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.037701 B = 0.002838 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.507411 B = 9862.083670 C =10274.504651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.615 5.615 3 C -0.244 4.244 4 H 0.084 0.916 5 C -0.062 4.062 6 N -0.945 5.945 7 Si 0.964 3.036 8 H -0.257 1.257 9 H -0.297 1.297 10 H -0.301 1.301 11 C 0.160 3.840 12 C -0.104 4.104 13 H 0.069 0.931 14 C -0.112 4.112 15 C 0.098 3.902 16 N -0.612 5.612 17 C 0.508 3.492 18 O -0.574 6.574 19 C 0.119 3.881 20 N -0.378 5.378 21 C 0.265 3.735 22 N -0.576 5.576 23 C 0.185 3.815 24 N -0.339 5.339 25 C 0.118 3.882 26 H 0.000 1.000 27 H 0.016 0.984 28 H 0.027 0.973 29 H 0.244 0.756 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.143 0.857 37 H 0.181 0.819 38 H 0.268 0.732 39 H 0.235 0.765 40 H 0.059 0.941 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.162 -9.903 -16.623 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.374 4.374 4 H 0.102 0.898 5 C -0.256 4.256 6 N -0.593 5.593 7 Si 0.793 3.207 8 H -0.181 1.181 9 H -0.224 1.224 10 H -0.228 1.228 11 C 0.033 3.967 12 C -0.126 4.126 13 H 0.087 0.913 14 C -0.150 4.150 15 C -0.023 4.023 16 N -0.346 5.346 17 C 0.296 3.704 18 O -0.453 6.453 19 C -0.006 4.006 20 N -0.169 5.169 21 C -0.031 4.031 22 N -0.304 5.304 23 C -0.118 4.118 24 N -0.166 5.166 25 C -0.005 4.005 26 H 0.019 0.981 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.161 0.839 37 H 0.198 0.802 38 H 0.284 0.716 39 H 0.251 0.749 40 H 0.078 0.922 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.201 -10.581 -15.900 21.653 hybrid contribution -0.358 1.153 0.613 1.354 sum 9.843 -9.428 -15.287 20.481 Atomic orbital electron populations 1.20516 0.83252 0.95722 0.97439 1.44112 1.01804 1.01748 1.86119 1.19627 0.98434 0.85973 1.33393 0.89818 1.25821 0.98781 1.01961 0.99061 1.70256 1.21273 1.27204 1.40599 0.85241 0.78273 0.80359 0.76845 1.18052 1.22399 1.22839 1.20757 0.95760 0.86833 0.93351 1.22826 0.98093 0.92587 0.99063 0.91258 1.22517 0.97303 0.97654 0.97543 1.22410 1.01982 0.78540 0.99346 1.48600 1.56253 1.06914 1.22820 1.20805 0.79849 0.82789 0.86941 1.90780 1.56036 1.28061 1.70456 1.21918 1.04342 0.79905 0.94451 1.50159 1.43463 1.11231 1.12079 1.27045 0.95903 0.91388 0.88768 1.70533 1.20469 1.12626 1.26788 1.26501 0.98013 1.00249 0.87025 1.78115 1.19745 0.96983 1.21764 1.22127 0.95254 0.97561 0.85597 0.98133 0.96518 0.95454 0.94662 0.94113 0.93290 0.90260 0.91318 0.88539 0.88249 0.83933 0.80202 0.71637 0.74862 0.92202 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.39 8.98 127.77 1.15 9.54 16 2 N -0.61 -28.49 2.91 -726.95 -2.11 -30.60 16 3 C -0.24 -12.19 9.16 84.03 0.77 -11.42 16 4 H 0.08 3.89 7.09 -2.91 -0.02 3.87 16 5 C -0.06 -3.31 5.10 84.86 0.43 -2.88 16 6 N -0.95 -54.83 10.71 21.65 0.23 -54.60 16 7 Si 0.96 42.70 29.57 68.60 2.03 44.73 16 8 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 9 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 11 C 0.16 5.82 5.17 86.38 0.45 6.26 16 12 C -0.10 -2.98 3.26 -9.40 -0.03 -3.01 16 13 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.11 -2.70 5.29 31.79 0.17 -2.53 16 15 C 0.10 1.50 6.49 86.73 0.56 2.06 16 16 N -0.61 -13.16 3.33 -811.78 -2.70 -15.86 16 17 C 0.51 11.78 7.89 87.66 0.69 12.47 16 18 O -0.57 -19.85 15.98 -3.02 -0.05 -19.89 16 19 C 0.12 1.45 6.22 85.64 0.53 1.99 16 20 N -0.38 -7.17 3.41 -355.81 -1.21 -8.38 16 21 C 0.26 3.97 12.63 180.36 2.28 6.25 16 22 N -0.58 -12.30 11.19 -204.00 -2.28 -14.59 16 23 C 0.18 4.15 13.03 180.77 2.36 6.50 16 24 N -0.34 -8.91 11.80 -61.25 -0.72 -9.64 16 25 C 0.12 3.12 6.37 86.86 0.55 3.68 16 26 H 0.00 0.02 7.34 -2.39 -0.02 0.00 16 27 H 0.02 0.84 7.34 -2.39 -0.02 0.82 16 28 H 0.03 1.10 8.03 -2.39 -0.02 1.09 16 29 H 0.24 13.87 8.31 -92.70 -0.77 13.10 16 30 H 0.04 1.45 8.07 -2.39 -0.02 1.44 16 31 H 0.05 1.79 7.87 -2.39 -0.02 1.77 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 1.77 7.75 -2.39 -0.02 1.75 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.18 0.33 8.09 -2.39 -0.02 0.31 16 38 H 0.27 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.24 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.06 1.75 8.04 -2.39 -0.02 1.73 16 41 H 0.07 1.78 8.04 -2.39 -0.02 1.76 16 Total: -1.00 -80.05 342.60 4.10 -75.95 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.02 Total: 3.97 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 9.91 Total: 28.91 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -8.80 Total: -133.66 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -80.05 4.10 -75.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494179515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.445 kcal (2) G-P(sol) polarization free energy of solvation -80.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds