Wall clock time and date at job start Fri Apr 10 2020 17:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 120.00144 * 2 1 4 4 O 1.21284 * 120.00273 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99876 * 0.02562 * 3 2 1 6 6 C 1.52996 * 109.47459 * 179.97438 * 5 3 2 7 7 C 1.50701 * 109.47459 * 180.02562 * 6 5 3 8 8 C 1.35348 * 126.91575 * 84.99251 * 7 6 5 9 9 N 1.33765 * 106.49653 * 179.97438 * 8 7 6 10 10 N 1.28632 * 108.88953 * 0.02562 * 9 8 7 11 11 N 1.28720 * 110.17369 * 359.75117 * 10 9 8 12 12 H 0.97008 * 125.86742 * 180.23753 * 11 10 9 13 13 C 1.46500 * 120.00257 * 180.02562 * 2 1 3 14 14 H 1.08999 * 110.91627 * 176.09592 * 13 2 1 15 15 C 1.55156 * 111.00227 * 300.00197 * 13 2 1 16 16 C 1.54322 * 102.94566 * 82.57027 * 15 13 2 17 17 N 1.47019 * 107.27055 * 22.19186 * 16 15 13 18 18 C 1.36938 * 125.64885 * 180.79386 * 17 16 15 19 19 H 1.08001 * 120.00018 * 173.97955 * 18 17 16 20 20 C 1.38818 * 119.99574 * 353.97555 * 18 17 16 21 21 N 1.31614 * 120.00293 * 6.86940 * 20 18 17 22 22 Si 1.86798 * 119.99584 * 186.86959 * 20 18 17 23 23 H 1.48507 * 109.47032 * 94.98523 * 22 20 18 24 24 H 1.48499 * 109.47306 * 214.98527 * 22 20 18 25 25 H 1.48502 * 109.47533 * 334.99048 * 22 20 18 26 26 C 1.47431 * 108.70477 * 1.05954 * 17 16 15 27 27 H 1.08994 * 109.46631 * 269.99402 * 1 2 3 28 28 H 1.08998 * 109.47119 * 29.99690 * 1 2 3 29 29 H 1.09000 * 109.47111 * 149.99600 * 1 2 3 30 30 H 1.09004 * 109.46796 * 299.99835 * 5 3 2 31 31 H 1.08998 * 109.47377 * 59.99245 * 5 3 2 32 32 H 1.08999 * 109.46628 * 299.99596 * 6 5 3 33 33 H 1.08998 * 109.47361 * 59.99335 * 6 5 3 34 34 H 1.07995 * 126.75003 * 359.97438 * 8 7 6 35 35 H 1.08999 * 110.71834 * 324.20166 * 15 13 2 36 36 H 1.09005 * 110.72039 * 200.93576 * 15 13 2 37 37 H 1.08999 * 109.88061 * 262.77126 * 16 15 13 38 38 H 1.09000 * 109.88190 * 141.61367 * 16 15 13 39 39 H 0.96993 * 119.99943 * 179.97438 * 21 20 18 40 40 H 1.09004 * 110.36471 * 94.70759 * 26 17 16 41 41 H 1.08996 * 110.36648 * 217.02834 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 1.6261 4.9403 0.0023 8 6 1.1382 5.5964 1.0810 9 7 0.5470 6.7030 0.6171 10 7 0.6607 6.7302 -0.6639 11 7 1.3055 5.6945 -1.0744 12 1 1.5223 5.4889 -1.9973 13 6 2.1976 -1.2687 -0.0006 14 1 3.2718 -1.0977 -0.0698 15 6 1.8484 -2.1130 1.2535 16 6 0.5312 -2.8068 0.8473 17 7 0.4793 -2.8192 -0.6219 18 6 -0.5384 -3.3332 -1.3803 19 1 -0.5290 -3.2079 -2.4530 20 6 -1.5821 -4.0156 -0.7703 21 7 -1.6658 -4.0527 0.5426 22 14 -2.8678 -4.8811 -1.8131 23 1 -2.4959 -6.3100 -1.9723 24 1 -4.1916 -4.7854 -1.1471 25 1 -2.9379 -4.2362 -3.1489 26 6 1.7075 -2.1923 -1.1436 27 1 -0.3632 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 0.7584 2.5302 -0.8892 31 1 0.7590 2.5298 0.8907 32 1 3.0061 3.5771 0.8911 33 1 3.0063 3.5779 -0.8888 34 1 1.2117 5.2871 2.1131 35 1 1.6945 -1.4704 2.1203 36 1 2.6271 -2.8496 1.4515 37 1 -0.3183 -2.2505 1.2436 38 1 0.5177 -3.8283 1.2274 39 1 -2.3953 -4.5292 0.9688 40 1 2.4569 -2.9523 -1.3649 41 1 1.4850 -1.6067 -2.0356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494852890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:36 Heat of formation + Delta-G solvation = 68.953586 kcal Electronic energy + Delta-G solvation = -23647.108119 eV Core-core repulsion = 20178.383139 eV Total energy + Delta-G solvation = -3468.724980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.27790 -41.21040 -39.10123 -35.79571 -35.45844 -34.19270 -33.90909 -31.39924 -30.72744 -29.40522 -27.46104 -26.55753 -25.60012 -23.96713 -22.80849 -21.93639 -21.73864 -19.79685 -19.24941 -18.89220 -18.15845 -17.28534 -16.87633 -16.83463 -16.62404 -15.68700 -15.45372 -15.39239 -15.00264 -14.82724 -14.21733 -13.90629 -13.78483 -13.57152 -13.39211 -13.22172 -12.92125 -12.80553 -12.77576 -12.73933 -12.35174 -12.22831 -11.99682 -11.97371 -11.78745 -11.74465 -11.57994 -11.50063 -10.75010 -10.68962 -10.13132 -9.62787 -8.76360 -7.83504 -5.16935 0.56818 1.48601 1.50870 1.54411 1.58216 1.66664 1.86329 2.13456 2.51158 3.35548 3.38912 3.66080 3.70568 3.86311 3.95651 3.98639 4.05001 4.15701 4.29176 4.35246 4.40078 4.52500 4.64338 4.67003 4.76690 4.78522 4.92499 5.00110 5.04160 5.07779 5.08542 5.22839 5.32451 5.50944 5.63878 5.71706 5.81961 5.99569 6.21399 6.56311 7.13140 7.21154 7.44179 7.79003 8.43692 9.26476 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.003390 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.897120 B = 8256.777134 C = 8956.498123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.592 5.592 3 C 0.512 3.488 4 O -0.581 6.581 5 C -0.127 4.127 6 C -0.022 4.022 7 C 0.009 3.991 8 C -0.054 4.054 9 N -0.303 5.303 10 N -0.112 5.112 11 N -0.375 5.375 12 H 0.462 0.538 13 C 0.133 3.867 14 H 0.109 0.891 15 C -0.141 4.141 16 C 0.186 3.814 17 N -0.614 5.614 18 C -0.238 4.238 19 H 0.080 0.920 20 C -0.054 4.054 21 N -0.942 5.942 22 Si 0.968 3.032 23 H -0.294 1.294 24 H -0.296 1.296 25 H -0.269 1.269 26 C 0.125 3.875 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.213 0.787 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.024 0.976 38 H 0.005 0.995 39 H 0.246 0.754 40 H 0.034 0.966 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.455 14.453 -1.018 16.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.322 5.322 3 C 0.303 3.697 4 O -0.462 6.462 5 C -0.167 4.167 6 C -0.061 4.061 7 C -0.126 4.126 8 C -0.211 4.211 9 N -0.169 5.169 10 N -0.092 5.092 11 N -0.098 5.098 12 H 0.310 0.690 13 C 0.028 3.972 14 H 0.127 0.873 15 C -0.180 4.180 16 C 0.062 3.938 17 N -0.341 5.341 18 C -0.366 4.366 19 H 0.098 0.902 20 C -0.248 4.248 21 N -0.591 5.591 22 Si 0.797 3.203 23 H -0.222 1.222 24 H -0.223 1.223 25 H -0.193 1.193 26 C -0.001 4.001 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.230 0.770 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.112 15.724 -1.298 17.306 hybrid contribution -0.393 -2.125 -0.570 2.235 sum 6.718 13.599 -1.868 15.283 Atomic orbital electron populations 1.22102 0.78323 1.04897 1.02109 1.47771 1.07684 1.05232 1.71562 1.21087 0.87667 0.85962 0.75027 1.90659 1.15169 1.87945 1.52432 1.21676 0.99024 0.89541 1.06501 1.19814 0.95353 0.84463 1.06514 1.22380 1.04839 0.98293 0.87064 1.23945 1.02120 0.92987 1.02090 1.75072 1.19589 1.20822 1.01464 1.78245 1.14904 1.08508 1.07533 1.45190 1.37138 1.15399 1.12076 0.68959 1.22053 0.96689 0.83024 0.95385 0.87340 1.23102 0.98611 0.98881 0.97444 1.20942 0.93137 0.96388 0.83365 1.44741 1.17743 1.69418 1.02210 1.19312 0.98981 1.27628 0.90710 0.90194 1.25493 1.01092 1.01496 0.96747 1.70155 1.33458 1.47068 1.08406 0.85220 0.78279 0.78469 0.78297 1.22166 1.22335 1.19340 1.21995 0.88764 0.93872 0.95499 0.93183 0.89547 0.89861 0.87434 0.86746 0.87503 0.88921 0.77009 0.90623 0.90227 0.95778 0.97648 0.94443 0.94793 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 8.50 127.77 1.09 3.08 16 2 N -0.59 -16.93 2.91 -814.83 -2.37 -19.30 16 3 C 0.51 12.65 7.67 87.66 0.67 13.33 16 4 O -0.58 -17.47 15.37 -3.04 -0.05 -17.52 16 5 C -0.13 -1.95 4.23 29.85 0.13 -1.82 16 6 C -0.02 -0.28 5.07 29.85 0.15 -0.12 16 7 C 0.01 0.13 6.56 41.36 0.27 0.40 16 8 C -0.05 -0.93 11.99 83.73 1.00 0.08 16 9 N -0.30 -7.24 12.41 -58.26 -0.72 -7.97 16 10 N -0.11 -2.47 13.38 37.02 0.50 -1.98 16 11 N -0.37 -5.41 6.98 -47.79 -0.33 -5.74 16 12 H 0.46 3.34 8.96 -219.95 -1.97 1.37 16 13 C 0.13 4.32 3.66 46.38 0.17 4.49 16 14 H 0.11 3.40 7.02 -2.39 -0.02 3.39 16 15 C -0.14 -4.85 6.48 31.78 0.21 -4.64 16 16 C 0.19 8.37 4.34 86.73 0.38 8.75 16 17 N -0.61 -28.35 1.87 -691.98 -1.29 -29.64 16 18 C -0.24 -12.18 9.79 84.03 0.82 -11.36 16 19 H 0.08 3.97 7.84 -2.91 -0.02 3.95 16 20 C -0.05 -2.88 5.48 84.86 0.47 -2.41 16 21 N -0.94 -52.89 10.36 21.65 0.22 -52.66 16 22 Si 0.97 43.30 29.56 68.60 2.03 45.33 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 C 0.12 4.69 6.40 86.85 0.56 5.24 16 27 H 0.05 1.46 7.90 -2.39 -0.02 1.44 16 28 H 0.09 1.90 6.44 -2.39 -0.02 1.89 16 29 H 0.08 3.22 4.74 -2.39 -0.01 3.20 16 30 H 0.11 1.39 7.40 -2.38 -0.02 1.38 16 31 H 0.11 1.52 8.11 -2.39 -0.02 1.50 16 32 H 0.11 1.40 8.10 -2.39 -0.02 1.38 16 33 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.02 1.18 6.52 -2.39 -0.02 1.16 16 38 H 0.01 0.28 7.36 -2.39 -0.02 0.26 16 39 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 40 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -68.31 331.75 2.97 -65.34 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -0.92 Total: 9.12 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 5.91 Total: 15.01 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -4.00 Total: -117.28 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.05 Total: -17.52 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -68.31 2.97 -65.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494852890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.290 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds