Wall clock time and date at job start Fri Apr 10 2020 17:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28712 * 126.03951 * 2 1 4 4 N 1.28517 * 110.64382 * 180.25948 * 3 2 1 5 5 C 1.33320 * 109.43384 * 359.74682 * 4 3 2 6 6 C 1.37008 * 106.37407 * 0.02562 * 5 4 3 7 7 C 1.47235 * 127.18773 * 179.97438 * 6 5 4 8 8 O 1.21617 * 119.99942 * 175.33494 * 7 6 5 9 9 N 1.34779 * 119.99739 * 355.61629 * 7 6 5 10 10 C 1.46502 * 119.99608 * 183.98317 * 9 7 6 11 11 C 1.52998 * 109.47088 * 87.43269 * 10 9 7 12 12 N 1.46504 * 110.01623 * 58.45938 * 11 10 9 13 13 C 1.36932 * 120.00226 * 293.81074 * 12 11 10 14 14 H 1.07997 * 119.99720 * 0.07904 * 13 12 11 15 15 C 1.38817 * 120.00462 * 180.08611 * 13 12 11 16 16 N 1.31622 * 119.99250 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00070 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47357 * 59.99741 * 17 15 13 19 19 H 1.48499 * 109.46730 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47075 * 299.99190 * 17 15 13 21 21 C 1.54266 * 110.03812 * 297.01763 * 11 10 9 22 22 C 1.54889 * 104.20082 * 217.10481 * 21 11 10 23 23 C 1.54896 * 102.74531 * 37.94004 * 22 21 11 24 24 C 1.53875 * 110.03564 * 179.84918 * 11 10 9 25 25 H 1.08998 * 109.47020 * 273.26401 * 1 2 3 26 26 H 1.09001 * 109.46908 * 33.26450 * 1 2 3 27 27 H 1.09003 * 109.47085 * 153.26763 * 1 2 3 28 28 H 1.08007 * 126.81143 * 179.97438 * 5 4 3 29 29 H 0.96993 * 120.00331 * 3.97780 * 9 7 6 30 30 H 1.09003 * 109.47328 * 207.43360 * 10 9 7 31 31 H 1.09001 * 109.47359 * 327.43422 * 10 9 7 32 32 H 0.97007 * 119.99936 * 113.80891 * 12 11 10 33 33 H 0.97008 * 119.99382 * 180.02562 * 16 15 13 34 34 H 1.09002 * 110.48004 * 335.78488 * 21 11 10 35 35 H 1.09003 * 110.48719 * 98.42305 * 21 11 10 36 36 H 1.08995 * 110.75593 * 279.62588 * 22 21 11 37 37 H 1.08999 * 110.75379 * 156.25089 * 22 21 11 38 38 H 1.09002 * 110.48283 * 203.38189 * 23 22 21 39 39 H 1.09003 * 110.48493 * 80.73920 * 23 22 21 40 40 H 1.08992 * 110.03680 * 238.57489 * 24 11 10 41 41 H 1.09000 * 110.02827 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4613 0.6996 -0.0054 5 6 3.5552 -0.6303 -0.0038 6 6 2.2712 -1.1081 0.0026 7 6 1.8462 -2.5178 0.0062 8 8 0.6660 -2.7970 0.0975 9 7 2.7656 -3.4990 -0.0861 10 6 2.3382 -4.8977 -0.1706 11 6 2.0886 -5.2673 -1.6341 12 7 3.3073 -5.0563 -2.4194 13 6 3.7965 -3.7898 -2.5973 14 1 3.2847 -2.9466 -2.1577 15 6 4.9503 -3.5897 -3.3429 16 7 5.5742 -4.6175 -3.8783 17 14 5.6172 -1.8619 -3.5862 18 1 5.9355 -1.2635 -2.2649 19 1 6.8493 -1.9188 -4.4131 20 1 4.5971 -1.0299 -4.2736 21 6 0.9366 -4.4151 -2.2055 22 6 0.1754 -5.3849 -3.1430 23 6 0.2345 -6.7254 -2.3690 24 6 1.6423 -6.7362 -1.7383 25 1 -0.3633 0.0585 1.0260 26 1 -0.3633 0.8593 -0.5637 27 1 -0.3633 -0.9179 -0.4623 28 1 4.4633 -1.2149 -0.0076 29 1 3.7102 -3.2791 -0.0967 30 1 3.1170 -5.5411 0.2389 31 1 1.4190 -5.0319 0.3998 32 1 3.7677 -5.8139 -2.8133 33 1 6.3807 -4.4777 -4.3990 34 1 0.2843 -4.0689 -1.4037 35 1 1.3308 -3.5698 -2.7696 36 1 0.6826 -5.4710 -4.1039 37 1 -0.8569 -5.0617 -3.2774 38 1 0.1163 -7.5661 -3.0526 39 1 -0.5312 -6.7523 -1.5937 40 1 2.3318 -7.2919 -2.3736 41 1 1.6030 -7.1856 -0.7460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495909560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:38 Heat of formation + Delta-G solvation = 77.563177 kcal Electronic energy + Delta-G solvation = -25150.943961 eV Core-core repulsion = 21682.592321 eV Total energy + Delta-G solvation = -3468.351640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.10512 -39.67651 -37.74586 -34.81256 -34.09938 -33.18784 -31.50268 -30.44278 -28.40809 -28.04071 -27.57327 -24.91429 -23.42369 -23.10022 -21.88314 -20.27850 -20.16849 -18.61710 -17.96929 -17.00603 -16.63175 -16.48976 -15.92757 -15.11217 -14.86086 -14.43822 -14.14344 -13.99243 -13.71515 -13.29714 -13.26720 -12.96312 -12.83398 -12.44721 -11.93063 -11.88316 -11.52558 -10.99184 -10.93030 -10.81978 -10.64303 -10.61978 -10.46098 -10.29616 -10.16824 -10.08601 -9.97885 -9.74599 -9.60336 -9.27331 -8.97585 -8.38019 -7.00135 -5.85249 -3.11547 1.12902 2.24447 2.48529 3.30441 3.38346 3.44352 3.48243 3.57098 4.49844 4.51139 4.69647 4.92122 5.03367 5.14026 5.22202 5.26568 5.31137 5.39432 5.55045 5.65185 5.74133 5.82207 5.93060 6.05701 6.10771 6.13973 6.20350 6.26149 6.32095 6.41358 6.50192 6.54431 6.76220 6.78953 6.88502 7.05750 7.15140 7.64011 7.82923 8.34746 8.41033 8.51509 9.45133 10.05004 10.40511 11.36850 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.008363 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.856846 B = 3347.150550 C = 5028.003248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.259 5.259 3 N -0.071 5.071 4 N -0.275 5.275 5 C 0.003 3.997 6 C -0.060 4.060 7 C 0.590 3.410 8 O -0.550 6.550 9 N -0.675 5.675 10 C 0.113 3.887 11 C 0.183 3.817 12 N -0.712 5.712 13 C -0.237 4.237 14 H 0.074 0.926 15 C -0.009 4.009 16 N -0.927 5.927 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.289 1.289 21 C -0.140 4.140 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.119 4.119 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.198 0.802 29 H 0.411 0.589 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.384 0.616 33 H 0.256 0.744 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 0.312 8.398 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.056 5.056 3 N -0.052 5.052 4 N -0.138 5.138 5 C -0.158 4.158 6 C -0.194 4.194 7 C 0.374 3.626 8 O -0.430 6.430 9 N -0.324 5.324 10 C -0.013 4.013 11 C 0.090 3.910 12 N -0.353 5.353 13 C -0.368 4.368 14 H 0.092 0.908 15 C -0.205 4.205 16 N -0.575 5.575 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.216 1.216 21 C -0.179 4.179 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.158 4.158 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.136 0.864 28 H 0.215 0.785 29 H 0.247 0.753 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.488 1.799 8.431 13.577 hybrid contribution 1.032 -0.242 -0.614 1.224 sum -9.457 1.557 7.818 12.368 Atomic orbital electron populations 1.22490 0.71792 1.06739 1.05146 1.47538 1.09646 1.03552 1.44867 1.78197 0.96822 1.11756 1.18405 1.74855 1.09032 1.12793 1.17138 1.23971 0.97092 0.91827 1.02860 1.22097 0.91309 0.91241 1.14729 1.16542 0.85971 0.82451 0.77625 1.90671 1.16733 1.83385 1.52170 1.45550 1.09843 1.06369 1.70607 1.22332 0.99936 0.79806 0.99256 1.20642 0.88227 0.92166 0.89968 1.42587 1.25657 1.06585 1.60519 1.19198 1.05189 0.85726 1.26666 0.90835 1.24716 0.98683 0.96568 1.00565 1.69643 1.20404 1.28571 1.38864 0.86537 0.78434 0.84543 0.78355 1.20535 1.21702 1.21561 1.23099 0.97177 0.98498 0.99099 1.22392 0.98887 0.95231 0.99096 1.22285 0.96788 0.97717 0.98876 1.22305 0.96656 0.96615 1.00221 0.89004 0.88424 0.86440 0.78512 0.75271 0.90658 0.90937 0.78182 0.93452 0.90399 0.91541 0.91882 0.93141 0.92587 0.92331 0.91254 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.96 59.85 0.66 1.52 16 2 N -0.26 -3.98 3.79 -64.12 -0.24 -4.22 16 3 N -0.07 -1.21 13.14 60.35 0.79 -0.42 16 4 N -0.28 -5.01 12.35 30.48 0.38 -4.63 16 5 C 0.00 0.05 11.54 -17.35 -0.20 -0.15 16 6 C -0.06 -0.98 6.98 -82.33 -0.57 -1.55 16 7 C 0.59 9.74 6.48 -12.60 -0.08 9.66 16 8 O -0.55 -9.45 11.81 5.26 0.06 -9.39 16 9 N -0.68 -10.87 3.16 -61.44 -0.19 -11.06 16 10 C 0.11 1.78 5.08 -4.04 -0.02 1.76 16 11 C 0.18 3.23 0.95 -130.70 -0.12 3.10 16 12 N -0.71 -15.56 5.17 -46.20 -0.24 -15.79 16 13 C -0.24 -5.68 7.33 -15.06 -0.11 -5.79 16 14 H 0.07 1.72 5.33 -52.49 -0.28 1.44 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 16 N -0.93 -26.09 13.06 55.49 0.72 -25.36 16 17 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 C -0.14 -2.54 4.79 -25.07 -0.12 -2.66 16 22 C -0.12 -1.94 6.91 -24.73 -0.17 -2.11 16 23 C -0.12 -1.69 6.83 -25.07 -0.17 -1.86 16 24 C -0.12 -1.82 6.24 -25.61 -0.16 -1.98 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.12 1.38 6.39 -51.93 -0.33 1.05 16 28 H 0.20 2.92 7.55 -52.48 -0.40 2.53 16 29 H 0.41 6.55 7.02 -40.82 -0.29 6.26 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.09 7.41 -51.93 -0.39 0.71 16 32 H 0.38 9.20 7.29 -40.82 -0.30 8.90 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.08 1.41 5.17 -51.93 -0.27 1.14 16 35 H 0.07 1.43 6.66 -51.93 -0.35 1.09 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.12 7.46 -51.93 -0.39 0.74 16 41 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -29.85 326.21 -5.47 -35.32 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -5.47 Total: 14.68 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.17 Total: -0.39 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 1.22 Total: -61.49 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.06 Total: -9.39 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.85 -5.47 -35.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495909560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.881 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds