Wall clock time and date at job start Fri Apr 10 2020 17:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34815 * 126.59640 * 2 1 4 4 C 1.36591 * 106.84218 * 180.26684 * 3 2 1 5 5 C 1.47525 * 125.76826 * 180.02562 * 4 3 2 6 6 O 1.21592 * 120.00411 * 359.96889 * 5 4 3 7 7 N 1.34776 * 119.99865 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00355 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47585 * 175.53867 * 8 7 5 10 10 N 1.46501 * 110.01297 * 55.26141 * 9 8 7 11 11 C 1.36931 * 120.00279 * 61.54761 * 10 9 8 12 12 H 1.07998 * 120.00086 * 354.38203 * 11 10 9 13 13 C 1.38815 * 120.00021 * 174.36971 * 11 10 9 14 14 N 1.31619 * 119.99732 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99989 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47190 * 59.99916 * 15 13 11 17 17 H 1.48498 * 109.47131 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46948 * 300.00010 * 15 13 11 19 19 C 1.54270 * 110.03180 * 293.81819 * 9 8 7 20 20 C 1.54880 * 104.19520 * 217.10356 * 19 9 8 21 21 C 1.54888 * 102.75241 * 37.94433 * 20 19 9 22 22 C 1.53874 * 110.03269 * 176.65217 * 9 8 7 23 23 N 1.34395 * 108.45883 * 359.97438 * 4 3 2 24 24 N 1.28760 * 109.52701 * 0.02562 * 23 4 3 25 25 H 1.08994 * 109.46949 * 269.70794 * 1 2 3 26 26 H 1.08997 * 109.47346 * 29.71016 * 1 2 3 27 27 H 1.09005 * 109.46817 * 149.70398 * 1 2 3 28 28 H 1.08007 * 126.57372 * 0.26558 * 3 2 1 29 29 H 0.97000 * 120.00029 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.47345 * 295.54581 * 8 7 5 31 31 H 1.09007 * 109.46843 * 55.53825 * 8 7 5 32 32 H 0.97000 * 119.99436 * 241.54885 * 10 9 8 33 33 H 0.97003 * 119.99298 * 179.97438 * 14 13 11 34 34 H 1.09004 * 110.48549 * 335.78408 * 19 9 8 35 35 H 1.09002 * 110.48420 * 98.42000 * 19 9 8 36 36 H 1.09004 * 110.75600 * 279.62642 * 20 19 9 37 37 H 1.09004 * 110.75660 * 156.25697 * 20 19 9 38 38 H 1.09001 * 110.49013 * 203.38348 * 21 20 19 39 39 H 1.09003 * 110.48630 * 80.73091 * 21 20 19 40 40 H 1.08996 * 110.02973 * 238.56941 * 22 9 8 41 41 H 1.08999 * 110.03022 * 0.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6207 -0.0061 5 6 4.7703 1.4558 -0.0078 6 8 4.6755 2.6680 -0.0041 7 7 5.9866 0.8751 -0.0135 8 6 7.1943 1.7043 -0.0157 9 6 8.4292 0.8072 0.0899 10 7 8.4177 -0.1901 -0.9831 11 6 8.4541 0.2115 -2.2917 12 1 8.3997 1.2622 -2.5357 13 6 8.5612 -0.7317 -3.3045 14 7 8.6272 -2.0121 -3.0070 15 14 8.6116 -0.1836 -5.0896 16 1 9.7822 0.7051 -5.3017 17 1 8.7272 -1.3741 -5.9698 18 1 7.3646 0.5537 -5.4164 19 6 8.4573 0.1064 1.4640 20 6 9.9583 0.0768 1.8446 21 6 10.4687 1.4455 1.3297 22 6 9.7081 1.6586 0.0046 23 7 3.5238 -0.7229 -0.0091 24 7 2.3009 -1.1257 -0.0059 25 1 -0.3633 -0.0052 1.0276 26 1 -0.3634 0.8925 -0.5093 27 1 -0.3633 -0.8874 -0.5185 28 1 1.9560 2.1162 0.0040 29 1 6.0623 -0.0919 -0.0168 30 1 7.2398 2.2776 -0.9417 31 1 7.1676 2.3873 0.8334 32 1 8.3843 -1.1351 -0.7665 33 1 8.7017 -2.6712 -3.7148 34 1 7.8892 0.6800 2.1964 35 1 8.0639 -0.9069 1.3835 36 1 10.4693 -0.7417 1.3376 37 1 10.0814 0.0002 2.9250 38 1 11.5434 1.4093 1.1511 39 1 10.2254 2.2353 2.0404 40 1 10.3206 1.3292 -0.8347 41 1 9.4489 2.7110 -0.1117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495910136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:44 Heat of formation + Delta-G solvation = 42.568173 kcal Electronic energy + Delta-G solvation = -23867.423352 eV Core-core repulsion = 20397.554215 eV Total energy + Delta-G solvation = -3469.869137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.18141 -40.67231 -39.41124 -35.72850 -35.45233 -35.01607 -32.49138 -31.94946 -29.64446 -29.54457 -28.52060 -26.27998 -25.11851 -23.92468 -23.10750 -21.73865 -21.13874 -20.19003 -19.16761 -18.76411 -17.36419 -17.21746 -17.06855 -16.65632 -16.01825 -15.95572 -15.74236 -15.56016 -15.12829 -14.84293 -14.47963 -14.11871 -13.98100 -13.89622 -13.40266 -13.22840 -13.10714 -12.85256 -12.59827 -12.32172 -12.22439 -12.03985 -11.82532 -11.76834 -11.52073 -11.42069 -11.30692 -11.30375 -11.14723 -10.85742 -10.39335 -9.87133 -8.93842 -7.88091 -5.14352 0.17451 0.64623 1.22187 1.45313 1.46453 1.51896 2.23419 2.35263 2.58506 3.25305 3.42462 3.53904 3.77645 3.87124 3.90476 3.97232 4.01988 4.17899 4.39002 4.44336 4.52731 4.59693 4.68261 4.71340 4.75600 4.82129 4.88747 4.99690 5.05215 5.15606 5.22787 5.30026 5.42715 5.47043 5.48999 5.56252 5.65094 5.73511 6.34870 6.54730 6.93914 7.20626 7.41424 8.16400 8.40043 9.34537 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.005268 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.912342 B = 5314.226763 C = 6683.958642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.351 5.351 3 C 0.111 3.889 4 C -0.128 4.128 5 C 0.596 3.404 6 O -0.577 6.577 7 N -0.688 5.688 8 C 0.124 3.876 9 C 0.182 3.818 10 N -0.716 5.716 11 C -0.215 4.215 12 H 0.067 0.933 13 C -0.069 4.069 14 N -0.963 5.963 15 Si 0.954 3.046 16 H -0.279 1.279 17 H -0.298 1.298 18 H -0.290 1.290 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.129 4.129 23 N -0.231 5.231 24 N -0.097 5.097 25 H 0.112 0.888 26 H 0.131 0.869 27 H 0.106 0.894 28 H 0.242 0.758 29 H 0.408 0.592 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.373 0.627 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.453 7.521 11.670 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.136 5.136 3 C -0.048 4.048 4 C -0.268 4.268 5 C 0.381 3.619 6 O -0.457 6.457 7 N -0.336 5.336 8 C -0.002 4.002 9 C 0.092 3.908 10 N -0.356 5.356 11 C -0.347 4.347 12 H 0.085 0.915 13 C -0.261 4.261 14 N -0.614 5.614 15 Si 0.785 3.215 16 H -0.205 1.205 17 H -0.225 1.225 18 H -0.217 1.217 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.169 4.169 23 N -0.104 5.104 24 N -0.077 5.077 25 H 0.130 0.870 26 H 0.149 0.851 27 H 0.125 0.875 28 H 0.258 0.742 29 H 0.244 0.756 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.206 0.794 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.487 6.910 11.510 19.030 hybrid contribution 0.031 0.125 -1.554 1.560 sum -13.456 7.035 9.956 18.157 Atomic orbital electron populations 1.22739 0.69168 1.07739 1.06741 1.50771 1.10771 1.04486 1.47577 1.23832 0.88777 0.96359 0.95833 1.21596 0.95574 0.90283 1.19343 1.17032 0.82469 0.86233 0.76205 1.90719 1.87269 1.13821 1.53937 1.45671 1.04906 1.11473 1.71511 1.21934 0.84499 0.93389 1.00346 1.20739 0.91855 0.89444 0.88770 1.42634 1.87772 1.04269 1.00957 1.19243 1.39205 0.92051 0.84196 0.91535 1.25310 1.04421 0.95538 1.00826 1.69783 1.59630 1.00112 1.31879 0.85500 0.77707 0.76355 0.81937 1.20491 1.22462 1.21654 1.22544 0.97892 1.00090 0.94978 1.22398 0.94572 0.97355 1.00919 1.22290 0.99314 0.97454 0.95883 1.22585 0.96656 0.99099 0.98520 1.74676 1.13872 1.11305 1.10583 1.81904 0.93577 1.08154 1.24085 0.87013 0.85120 0.87544 0.74158 0.75646 0.94297 0.90510 0.79363 0.94415 0.89796 0.92496 0.93246 0.89614 0.91717 0.89943 0.93195 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.51 127.77 1.47 1.97 16 2 N -0.35 -7.06 4.03 -368.60 -1.49 -8.54 16 3 C 0.11 2.45 11.31 83.85 0.95 3.40 16 4 C -0.13 -4.16 6.99 40.82 0.29 -3.87 16 5 C 0.60 22.16 7.82 86.69 0.68 22.84 16 6 O -0.58 -22.77 16.86 -4.01 -0.07 -22.84 16 7 N -0.69 -26.47 5.22 -466.27 -2.44 -28.90 16 8 C 0.12 4.66 4.04 86.38 0.35 5.01 16 9 C 0.18 6.83 0.68 4.33 0.00 6.83 16 10 N -0.72 -34.20 4.53 -300.06 -1.36 -35.56 16 11 C -0.21 -11.61 8.52 84.04 0.72 -10.90 16 12 H 0.07 3.58 7.27 -2.91 -0.02 3.56 16 13 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 14 N -0.96 -58.82 13.07 21.65 0.28 -58.54 16 15 Si 0.95 47.44 29.55 68.60 2.03 49.47 16 16 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 17 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 18 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 19 C -0.12 -3.67 5.72 31.67 0.18 -3.48 16 20 C -0.11 -3.22 6.91 31.88 0.22 -3.00 16 21 C -0.11 -3.04 6.83 31.67 0.22 -2.83 16 22 C -0.13 -4.47 5.93 31.32 0.19 -4.29 16 23 N -0.23 -8.29 12.04 -50.00 -0.60 -8.89 16 24 N -0.10 -2.95 13.78 37.02 0.51 -2.44 16 25 H 0.11 0.31 8.14 -2.39 -0.02 0.30 16 26 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.24 3.23 8.06 -2.91 -0.02 3.20 16 29 H 0.41 16.60 7.68 -92.71 -0.71 15.89 16 30 H 0.04 1.65 7.46 -2.39 -0.02 1.63 16 31 H 0.08 2.58 8.04 -2.38 -0.02 2.56 16 32 H 0.37 19.49 7.45 -92.71 -0.69 18.80 16 33 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.08 2.30 7.79 -2.38 -0.02 2.28 16 35 H 0.06 1.91 7.72 -2.39 -0.02 1.90 16 36 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 2.06 7.36 -2.39 -0.02 2.05 16 41 H 0.06 2.01 7.67 -2.39 -0.02 1.99 16 Total: -1.00 -74.91 343.97 2.25 -72.66 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.34 Total: 35.36 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 5.72 Total: 8.22 kcal Atomic # 7 Polarization: -137.79 SS G_CDS: -5.09 Total: -142.88 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.07 Total: -22.84 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -74.91 2.25 -72.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495910136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.231 kcal (2) G-P(sol) polarization free energy of solvation -74.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds