Wall clock time and date at job start Fri Apr 10 2020 17:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 120.00003 * 2 1 4 4 N 1.46500 * 109.47174 * 124.99724 * 3 2 1 5 5 C 1.46497 * 119.99932 * 264.89475 * 4 3 2 6 6 C 1.50702 * 109.46928 * 269.99389 * 5 4 3 7 7 H 1.07999 * 119.99937 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00197 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99986 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00259 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47323 * 60.00445 * 10 8 6 12 12 H 1.48499 * 109.47273 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.47413 * 300.00492 * 10 8 6 14 14 C 1.34776 * 119.99764 * 84.88802 * 4 3 2 15 15 O 1.21290 * 119.99595 * 184.67781 * 14 4 3 16 16 C 1.50695 * 120.00082 * 4.68432 * 14 4 3 17 17 H 1.08996 * 109.58260 * 304.26762 * 16 14 4 18 18 C 1.53201 * 109.58471 * 64.54735 * 16 14 4 19 19 N 1.47305 * 108.80787 * 119.80143 * 18 16 14 20 20 C 1.47311 * 110.08134 * 60.85114 * 19 18 16 21 21 C 1.53206 * 108.80364 * 299.14135 * 20 19 18 22 22 N 1.47312 * 108.80388 * 0.02562 * 21 20 19 23 23 C 1.47276 * 110.15362 * 299.18508 * 22 21 20 24 24 C 1.47276 * 110.15578 * 299.18351 * 19 18 16 25 25 H 1.09006 * 109.69341 * 180.67093 * 24 19 18 26 26 C 1.52996 * 109.58394 * 301.01151 * 24 19 18 27 27 H 1.07998 * 119.99765 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00402 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00528 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46549 * 5.00144 * 3 2 1 31 31 H 1.08994 * 109.46988 * 244.99928 * 3 2 1 32 32 H 1.08999 * 109.47507 * 30.00048 * 5 4 3 33 33 H 1.09001 * 109.47148 * 149.99920 * 5 4 3 34 34 H 0.97004 * 120.00561 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.58215 * 359.97438 * 18 16 14 36 36 H 1.09007 * 109.57659 * 239.59687 * 18 16 14 37 37 H 1.09002 * 109.57948 * 58.94056 * 20 19 18 38 38 H 1.08999 * 109.58114 * 179.34236 * 20 19 18 39 39 H 1.09000 * 109.58341 * 240.20311 * 21 20 19 40 40 H 1.09001 * 109.68839 * 119.86435 * 21 20 19 41 41 H 1.08999 * 109.58105 * 301.00825 * 23 22 21 42 42 H 1.09003 * 109.58217 * 180.60351 * 23 22 21 43 43 H 1.08997 * 109.47040 * 179.31739 * 26 24 19 44 44 H 1.09007 * 109.47184 * 299.31394 * 26 24 19 45 45 H 1.09003 * 109.47195 * 59.31300 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5968 1.9660 2.3911 6 6 2.9834 3.4223 2.3641 7 1 3.4751 3.8345 1.4953 8 6 2.7084 4.2288 3.4480 9 7 2.1092 3.7271 4.5057 10 14 3.1869 6.0341 3.4143 11 1 2.4998 6.7074 2.2829 12 1 2.7848 6.6768 4.6912 13 1 4.6571 6.1535 3.2421 14 6 4.2145 0.7733 1.0135 15 8 4.9524 0.7199 1.9746 16 6 4.6628 0.2151 -0.3125 17 1 3.9403 -0.5227 -0.6614 18 6 4.7734 1.3495 -1.3363 19 7 6.1634 1.4198 -1.8189 20 6 6.5368 0.1531 -2.4716 21 6 6.4264 -0.9813 -1.4477 22 7 5.9839 -0.4178 -0.1606 23 6 6.9648 0.5671 0.3262 24 6 7.0761 1.7015 -0.6979 25 1 8.1006 1.7636 -1.0651 26 6 6.6862 3.0263 -0.0395 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4026 -0.9313 32 1 1.5177 1.8787 2.5177 33 1 3.1011 1.4716 3.2214 34 1 1.9160 4.2944 5.2685 35 1 4.5015 2.2943 -0.8655 36 1 4.1052 1.1515 -2.1744 37 1 5.8625 -0.0407 -3.3058 38 1 7.5622 0.2181 -2.8356 39 1 7.3991 -1.4573 -1.3235 40 1 5.7006 -1.7179 -1.7925 41 1 7.9360 0.0870 0.4459 42 1 6.6337 0.9699 1.2834 43 1 7.3552 3.2270 0.7972 44 1 6.7656 3.8320 -0.7694 45 1 5.6600 2.9639 0.3226 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520190769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:00 Heat of formation + Delta-G solvation = 32.242642 kcal Electronic energy + Delta-G solvation = -25894.758573 eV Core-core repulsion = 22527.982030 eV Total energy + Delta-G solvation = -3366.776542 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.49431 -38.53186 -35.77366 -33.54472 -33.18815 -32.39057 -32.01549 -31.29692 -27.66805 -26.87319 -25.64289 -24.27704 -23.65948 -22.54886 -21.78101 -20.00501 -18.88645 -17.98521 -17.12278 -16.67086 -16.43087 -15.95465 -15.31423 -15.04336 -14.66154 -14.36554 -14.01142 -13.61014 -13.34712 -13.15434 -12.97158 -12.86244 -12.54121 -12.48191 -12.24724 -11.77224 -11.65615 -11.59129 -11.30453 -11.23793 -11.07189 -10.94719 -10.79997 -10.60017 -10.53351 -10.36580 -10.16516 -9.73827 -9.65427 -9.21057 -8.71973 -8.45069 -7.72462 -7.54784 -6.06179 -4.11632 2.41333 3.29647 3.31319 3.34823 3.39118 3.61898 3.88111 4.30263 4.42041 4.65763 4.81454 4.85157 4.94654 5.07668 5.18351 5.27915 5.31864 5.39158 5.43140 5.48255 5.49952 5.55383 5.61566 5.64856 5.78309 5.83401 5.94317 5.97996 6.05198 6.15247 6.23266 6.37396 6.51070 6.68789 6.76675 6.82179 6.88919 7.05878 7.18541 7.26730 7.45066 7.53903 7.90044 8.20448 8.37681 8.87069 9.06634 9.53680 11.01698 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014619 B = 0.006526 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.868311 B = 4289.409934 C = 5406.589667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.130 3.870 4 N -0.591 5.591 5 C 0.249 3.751 6 C -0.528 4.528 7 H 0.056 0.944 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.519 3.481 15 O -0.522 6.522 16 C 0.023 3.977 17 H 0.102 0.898 18 C 0.016 3.984 19 N -0.510 5.510 20 C 0.010 3.990 21 C 0.010 3.990 22 N -0.493 5.493 23 C -0.007 4.007 24 C 0.039 3.961 25 H 0.081 0.919 26 C -0.144 4.144 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.131 0.869 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.064 -7.266 -14.591 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.006 3.994 4 N -0.322 5.322 5 C 0.130 3.870 6 C -0.566 4.566 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.305 3.695 15 O -0.399 6.399 16 C -0.092 4.092 17 H 0.120 0.880 18 C -0.114 4.114 19 N -0.232 5.232 20 C -0.120 4.120 21 C -0.120 4.120 22 N -0.214 5.214 23 C -0.136 4.136 24 C -0.071 4.071 25 H 0.099 0.901 26 C -0.202 4.202 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.148 0.852 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.391 -7.221 -13.849 16.224 hybrid contribution 0.117 0.852 -0.072 0.863 sum 4.508 -6.369 -13.921 15.959 Atomic orbital electron populations 1.23815 0.95801 1.01782 1.00498 1.23434 0.96448 0.99005 0.99992 1.20732 0.93203 0.95442 0.90060 1.48165 1.12906 1.55672 1.15482 1.19283 0.95770 0.92156 0.79831 1.21364 1.39314 0.94048 1.01908 0.92549 1.24910 0.95040 0.98749 0.95189 1.69922 1.41469 1.36190 1.05560 0.86609 0.79117 0.84755 0.77259 1.20233 1.21183 1.20141 1.19902 0.82206 0.78416 0.88990 1.90531 1.52507 1.57180 1.39684 1.22427 0.93395 0.97618 0.95713 0.87997 1.23025 0.90877 0.99817 0.97659 1.63961 1.02226 1.30578 1.26410 1.22904 1.02277 0.89463 0.97364 1.22944 1.02013 0.97344 0.89733 1.63635 1.01257 1.32043 1.24504 1.23554 0.95956 0.92202 1.01859 1.22458 0.96672 0.96762 0.91206 0.90064 1.21904 1.03069 0.95311 0.99888 0.88767 0.88246 0.87864 0.89204 0.90657 0.95015 0.93776 0.92640 0.88490 0.89738 0.90297 0.90352 0.90133 0.90423 0.91084 0.85168 0.91826 0.92438 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 14.32 29.02 0.42 -1.87 16 2 C -0.17 -2.37 9.45 -36.02 -0.34 -2.71 16 3 C 0.13 2.06 5.40 -5.19 -0.03 2.03 16 4 N -0.59 -12.08 2.42 -176.43 -0.43 -12.51 16 5 C 0.25 6.35 5.17 -5.19 -0.03 6.32 16 6 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 10 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.52 10.54 5.69 -10.99 -0.06 10.48 16 15 O -0.52 -12.71 13.12 5.55 0.07 -12.63 16 16 C 0.02 0.35 2.07 -68.56 -0.14 0.21 16 17 H 0.10 1.45 7.06 -51.93 -0.37 1.08 16 18 C 0.02 0.23 3.63 -3.50 -0.01 0.22 16 19 N -0.51 -6.95 5.24 -225.25 -1.18 -8.13 16 20 C 0.01 0.11 6.13 -3.49 -0.02 0.09 16 21 C 0.01 0.11 6.14 -3.49 -0.02 0.09 16 22 N -0.49 -7.69 5.08 -226.66 -1.15 -8.84 16 23 C -0.01 -0.11 5.36 -3.50 -0.02 -0.13 16 24 C 0.04 0.56 3.05 -67.39 -0.21 0.36 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 C -0.14 -2.32 8.65 37.16 0.32 -2.00 16 27 H 0.09 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.10 1.23 7.84 -52.48 -0.41 0.82 16 29 H 0.10 1.39 7.53 -52.49 -0.40 1.00 16 30 H 0.09 1.48 7.68 -51.93 -0.40 1.08 16 31 H 0.08 1.02 4.65 -51.93 -0.24 0.78 16 32 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.29 7.36 -51.93 -0.38 0.91 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.10 1.60 5.28 -51.93 -0.27 1.33 16 36 H 0.08 1.01 7.55 -51.92 -0.39 0.62 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.13 2.60 4.53 -51.93 -0.24 2.37 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 45 H 0.07 1.31 5.51 -51.93 -0.29 1.02 16 LS Contribution 342.31 15.07 5.16 5.16 Total: -1.00 -31.14 342.31 -9.53 -40.67 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -7.15 Total: 5.26 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -0.56 Total: 0.02 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -2.02 Total: -54.93 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.14 -9.53 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520190769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.911 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds