Wall clock time and date at job start Fri Apr 10 2020 17:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99658 * 2 1 4 4 N 1.46504 * 109.46731 * 128.88491 * 3 2 1 5 5 C 1.46502 * 119.99798 * 276.28161 * 4 3 2 6 6 C 1.50701 * 109.46964 * 270.00303 * 5 4 3 7 7 H 1.07990 * 120.00424 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99498 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99515 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00398 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47065 * 89.99972 * 10 8 6 12 12 H 1.48500 * 109.46951 * 209.99706 * 10 8 6 13 13 H 1.48503 * 109.46878 * 329.99839 * 10 8 6 14 14 C 1.34777 * 120.00195 * 96.28555 * 4 3 2 15 15 O 1.21286 * 119.99696 * 184.97057 * 14 4 3 16 16 C 1.50702 * 120.00039 * 4.96841 * 14 4 3 17 17 H 1.08996 * 109.68756 * 49.56155 * 16 14 4 18 18 C 1.53208 * 109.58206 * 289.21894 * 16 14 4 19 19 N 1.47309 * 108.80271 * 240.21179 * 18 16 14 20 20 C 1.47267 * 110.16155 * 60.80540 * 19 18 16 21 21 C 1.53228 * 108.80537 * 299.18846 * 20 19 18 22 22 N 1.47273 * 108.80377 * 0.02562 * 21 20 19 23 23 C 1.47317 * 110.15427 * 299.18735 * 22 21 20 24 24 C 1.47314 * 110.07626 * 299.13967 * 19 18 16 25 25 H 1.09004 * 109.58297 * 180.65479 * 24 19 18 26 26 C 1.53008 * 109.58158 * 301.05756 * 24 19 18 27 27 H 1.07998 * 119.99684 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99699 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00192 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.47359 * 8.88021 * 3 2 1 31 31 H 1.09000 * 109.47162 * 248.87777 * 3 2 1 32 32 H 1.09000 * 109.47248 * 29.99971 * 5 4 3 33 33 H 1.09000 * 109.47251 * 149.99978 * 5 4 3 34 34 H 0.97002 * 119.99671 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.58264 * 120.40989 * 18 16 14 36 36 H 1.09004 * 109.69514 * 0.07009 * 18 16 14 37 37 H 1.08997 * 109.58907 * 179.38690 * 20 19 18 38 38 H 1.09001 * 109.58027 * 58.97947 * 20 19 18 39 39 H 1.09001 * 109.58274 * 240.21052 * 21 20 19 40 40 H 1.09005 * 109.58708 * 119.79826 * 21 20 19 41 41 H 1.08998 * 109.58109 * 180.60250 * 23 22 21 42 42 H 1.08997 * 109.57975 * 301.00504 * 23 22 21 43 43 H 1.09000 * 109.46745 * 60.00616 * 26 24 19 44 44 H 1.08994 * 109.47126 * 179.97438 * 26 24 19 45 45 H 1.08994 * 109.47392 * 299.99942 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0585 1.2945 1.0752 5 6 2.6656 1.6521 2.4405 6 6 2.8358 3.1361 2.6398 7 1 3.2006 3.7513 1.8307 8 6 2.5257 3.7084 3.8553 9 7 2.6747 5.0035 4.0293 10 14 1.8953 2.6443 5.2551 11 1 3.0431 2.1538 6.0596 12 1 0.9923 3.4466 6.1189 13 1 1.1495 1.4865 4.6996 14 6 4.3355 0.9558 0.8083 15 8 5.1387 0.8593 1.7120 16 6 4.7652 0.6970 -0.6127 17 1 4.4343 1.5160 -1.2513 18 6 4.1505 -0.6177 -1.1037 19 7 5.2373 -1.5432 -1.4675 20 6 6.0804 -1.8228 -0.2929 21 6 6.6952 -0.5079 0.1981 22 7 6.2325 0.5865 -0.6720 23 6 6.6654 0.3490 -2.0600 24 6 6.0517 -0.9660 -2.5509 25 1 6.8458 -1.6619 -2.8215 26 6 5.1665 -0.6950 -3.7692 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3659 2.1274 0.1586 31 1 2.5658 1.4347 -0.9586 32 1 1.6220 1.3813 2.6009 33 1 3.2936 1.1156 3.1517 34 1 2.4569 5.4061 4.8846 35 1 3.5266 -0.4257 -1.9766 36 1 3.5451 -1.0585 -0.3117 37 1 6.8743 -2.5164 -0.5696 38 1 5.4710 -2.2591 0.4986 39 1 7.7823 -0.5745 0.1552 40 1 6.3791 -0.3173 1.2238 41 1 6.3275 1.1692 -2.6934 42 1 7.7526 0.2804 -2.0969 43 1 4.3775 0.0058 -3.4962 44 1 5.7706 -0.2676 -4.5694 45 1 4.7207 -1.6295 -4.1095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520190770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:03 Heat of formation + Delta-G solvation = 39.636978 kcal Electronic energy + Delta-G solvation = -25608.832811 eV Core-core repulsion = 22242.376912 eV Total energy + Delta-G solvation = -3366.455900 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.57228 -38.72821 -35.96201 -33.54892 -33.14723 -32.46012 -32.27941 -31.39883 -28.30085 -27.13207 -25.71940 -24.22731 -23.86298 -22.40119 -21.77661 -20.17998 -18.87765 -17.80427 -17.57458 -16.90402 -16.71554 -15.98831 -15.54046 -15.27139 -14.75458 -14.32950 -13.93782 -13.73442 -13.59463 -13.19995 -13.04834 -12.93350 -12.75327 -12.54231 -12.37549 -12.14834 -11.80104 -11.77756 -11.62173 -11.45804 -11.30548 -11.08939 -10.90320 -10.62727 -10.53270 -10.41091 -10.14046 -9.79948 -9.56058 -9.27014 -8.82605 -8.59487 -7.84046 -7.57951 -6.09349 -4.08322 2.33464 3.20538 3.28685 3.34672 3.36611 3.53429 3.77226 4.19502 4.38984 4.51736 4.66402 4.71776 4.86787 5.05933 5.10887 5.15161 5.19212 5.24467 5.28744 5.31827 5.35277 5.51077 5.54912 5.59792 5.64751 5.69887 5.77232 5.85674 5.91351 5.92353 5.99262 6.10410 6.29473 6.54621 6.68086 6.71631 6.73028 6.81849 6.92222 7.10827 7.19223 7.33041 7.59748 8.18006 8.45746 8.89392 8.95864 9.50745 11.03972 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.005253 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.907957 B = 5329.430613 C = 5951.632615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.173 4.173 3 C 0.134 3.866 4 N -0.586 5.586 5 C 0.218 3.782 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.522 3.478 15 O -0.523 6.523 16 C 0.024 3.976 17 H 0.105 0.895 18 C 0.017 3.983 19 N -0.511 5.511 20 C 0.012 3.988 21 C -0.016 4.016 22 N -0.492 5.492 23 C 0.014 3.986 24 C 0.034 3.966 25 H 0.086 0.914 26 C -0.142 4.142 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 -13.477 -14.977 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.192 4.192 3 C 0.010 3.990 4 N -0.317 5.317 5 C 0.098 3.902 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.309 3.691 15 O -0.400 6.400 16 C -0.089 4.089 17 H 0.123 0.877 18 C -0.113 4.113 19 N -0.232 5.232 20 C -0.118 4.118 21 C -0.144 4.144 22 N -0.213 5.213 23 C -0.116 4.116 24 C -0.076 4.076 25 H 0.104 0.896 26 C -0.200 4.200 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.150 0.850 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.083 -13.353 -14.326 19.695 hybrid contribution -0.345 -0.332 0.715 0.860 sum 1.738 -13.686 -13.611 19.380 Atomic orbital electron populations 1.23845 0.95813 1.01885 1.00304 1.23555 0.96418 0.99010 1.00192 1.20643 0.92030 0.95542 0.90764 1.47838 1.07157 1.65944 1.10719 1.19652 0.95364 0.96911 0.78268 1.21318 1.44772 0.90908 0.99797 0.90722 1.24840 0.95013 0.94853 0.98170 1.69899 1.48550 1.10217 1.24826 0.86871 0.79376 0.80758 0.82832 1.19908 1.21056 1.19037 1.19952 0.82301 0.77276 0.89602 1.90467 1.50763 1.51395 1.47386 1.22380 0.90172 0.99548 0.96840 0.87678 1.23142 0.94638 0.91501 1.02004 1.63982 1.10808 1.40818 1.07629 1.22908 0.97468 0.98358 0.93083 1.23554 1.00118 0.88574 1.02187 1.63622 1.08362 1.42544 1.06733 1.23063 1.00968 0.97256 0.90308 1.22470 0.96453 0.96340 0.92342 0.89614 1.21893 0.99634 1.02044 0.96381 0.88184 0.88658 0.87379 0.89217 0.90469 0.95142 0.94527 0.92554 0.89119 0.89386 0.90595 0.90331 0.90938 0.84991 0.90061 0.90077 0.92372 0.91957 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.01 0.42 -1.72 16 2 C -0.17 -2.27 8.99 -36.03 -0.32 -2.59 16 3 C 0.13 2.06 5.37 -5.19 -0.03 2.03 16 4 N -0.59 -11.74 2.44 -176.43 -0.43 -12.17 16 5 C 0.22 5.29 4.28 -5.19 -0.02 5.26 16 6 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 7 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 9 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 10 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 14 C 0.52 10.47 6.53 -10.98 -0.07 10.40 16 15 O -0.52 -12.45 12.91 5.55 0.07 -12.38 16 16 C 0.02 0.38 1.99 -68.55 -0.14 0.24 16 17 H 0.11 1.54 7.06 -51.93 -0.37 1.17 16 18 C 0.02 0.22 3.69 -3.49 -0.01 0.21 16 19 N -0.51 -6.24 5.24 -225.25 -1.18 -7.42 16 20 C 0.01 0.15 6.14 -3.51 -0.02 0.13 16 21 C -0.02 -0.23 5.72 -3.50 -0.02 -0.25 16 22 N -0.49 -7.61 5.12 -226.67 -1.16 -8.77 16 23 C 0.01 0.17 5.79 -3.49 -0.02 0.15 16 24 C 0.03 0.36 3.05 -67.38 -0.21 0.15 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 26 C -0.14 -1.22 8.63 37.16 0.32 -0.90 16 27 H 0.10 1.16 7.86 -52.49 -0.41 0.75 16 28 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.11 1.37 5.86 -52.49 -0.31 1.06 16 30 H 0.09 1.45 7.79 -51.93 -0.40 1.05 16 31 H 0.08 1.00 5.58 -51.93 -0.29 0.71 16 32 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.04 0.95 6.79 -51.93 -0.35 0.60 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.09 1.00 6.08 -51.93 -0.32 0.68 16 36 H 0.09 1.21 5.10 -51.93 -0.26 0.95 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.13 2.46 4.86 -52.17 -0.25 2.20 16 41 H 0.08 0.89 7.61 -51.93 -0.40 0.50 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.52 6.31 -51.93 -0.33 0.19 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -32.94 337.25 -9.11 -42.05 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.03 Total: 3.88 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.57 Total: -0.32 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -2.00 Total: -55.23 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.94 -9.11 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520190770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.689 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds