Wall clock time and date at job start Fri Apr 10 2020 17:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99658 * 2 1 4 4 N 1.46504 * 109.46731 * 128.88491 * 3 2 1 5 5 C 1.46502 * 119.99798 * 276.28161 * 4 3 2 6 6 C 1.50701 * 109.46964 * 270.00303 * 5 4 3 7 7 H 1.07990 * 120.00424 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99498 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99515 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00398 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47065 * 89.99972 * 10 8 6 12 12 H 1.48500 * 109.46951 * 209.99706 * 10 8 6 13 13 H 1.48503 * 109.46878 * 329.99839 * 10 8 6 14 14 C 1.34777 * 120.00195 * 96.28555 * 4 3 2 15 15 O 1.21286 * 119.99696 * 184.97057 * 14 4 3 16 16 C 1.50702 * 120.00039 * 4.96841 * 14 4 3 17 17 H 1.08996 * 109.68756 * 49.56155 * 16 14 4 18 18 C 1.53208 * 109.58206 * 289.21894 * 16 14 4 19 19 N 1.47309 * 108.80271 * 240.21179 * 18 16 14 20 20 C 1.47267 * 110.16155 * 60.80540 * 19 18 16 21 21 C 1.53228 * 108.80537 * 299.18846 * 20 19 18 22 22 N 1.47273 * 108.80377 * 0.02562 * 21 20 19 23 23 C 1.47317 * 110.15427 * 299.18735 * 22 21 20 24 24 C 1.47314 * 110.07626 * 299.13967 * 19 18 16 25 25 H 1.09004 * 109.58297 * 180.65479 * 24 19 18 26 26 C 1.53008 * 109.58158 * 301.05756 * 24 19 18 27 27 H 1.07998 * 119.99684 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99699 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00192 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.47359 * 8.88021 * 3 2 1 31 31 H 1.09000 * 109.47162 * 248.87777 * 3 2 1 32 32 H 1.09000 * 109.47248 * 29.99971 * 5 4 3 33 33 H 1.09000 * 109.47251 * 149.99978 * 5 4 3 34 34 H 0.97002 * 119.99671 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.58264 * 120.40989 * 18 16 14 36 36 H 1.09004 * 109.69514 * 0.07009 * 18 16 14 37 37 H 1.08997 * 109.58907 * 179.38690 * 20 19 18 38 38 H 1.09001 * 109.58027 * 58.97947 * 20 19 18 39 39 H 1.09001 * 109.58274 * 240.21052 * 21 20 19 40 40 H 1.09005 * 109.58708 * 119.79826 * 21 20 19 41 41 H 1.08998 * 109.58109 * 180.60250 * 23 22 21 42 42 H 1.08997 * 109.57975 * 301.00504 * 23 22 21 43 43 H 1.09000 * 109.46745 * 60.00616 * 26 24 19 44 44 H 1.08994 * 109.47126 * 179.97438 * 26 24 19 45 45 H 1.08994 * 109.47392 * 299.99942 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0585 1.2945 1.0752 5 6 2.6656 1.6521 2.4405 6 6 2.8358 3.1361 2.6398 7 1 3.2006 3.7513 1.8307 8 6 2.5257 3.7084 3.8553 9 7 2.6747 5.0035 4.0293 10 14 1.8953 2.6443 5.2551 11 1 3.0431 2.1538 6.0596 12 1 0.9923 3.4466 6.1189 13 1 1.1495 1.4865 4.6996 14 6 4.3355 0.9558 0.8083 15 8 5.1387 0.8593 1.7120 16 6 4.7652 0.6970 -0.6127 17 1 4.4343 1.5160 -1.2513 18 6 4.1505 -0.6177 -1.1037 19 7 5.2373 -1.5432 -1.4675 20 6 6.0804 -1.8228 -0.2929 21 6 6.6952 -0.5079 0.1981 22 7 6.2325 0.5865 -0.6720 23 6 6.6654 0.3490 -2.0600 24 6 6.0517 -0.9660 -2.5509 25 1 6.8458 -1.6619 -2.8215 26 6 5.1665 -0.6950 -3.7692 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3659 2.1274 0.1586 31 1 2.5658 1.4347 -0.9586 32 1 1.6220 1.3813 2.6009 33 1 3.2936 1.1156 3.1517 34 1 2.4569 5.4061 4.8846 35 1 3.5266 -0.4257 -1.9766 36 1 3.5451 -1.0585 -0.3117 37 1 6.8743 -2.5164 -0.5696 38 1 5.4710 -2.2591 0.4986 39 1 7.7823 -0.5745 0.1552 40 1 6.3791 -0.3173 1.2238 41 1 6.3275 1.1692 -2.6934 42 1 7.7526 0.2804 -2.0969 43 1 4.3775 0.0058 -3.4962 44 1 5.7706 -0.2676 -4.5694 45 1 4.7207 -1.6295 -4.1095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520190770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:02 Heat of formation + Delta-G solvation = 13.910972 kcal Electronic energy + Delta-G solvation = -25609.948375 eV Core-core repulsion = 22242.376912 eV Total energy + Delta-G solvation = -3367.571463 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.70252 -40.18154 -37.42046 -35.13765 -34.46600 -33.80532 -33.38260 -32.73414 -30.10203 -28.06446 -27.02185 -25.66311 -24.89497 -23.87117 -23.01435 -21.31885 -20.18717 -19.13112 -18.95281 -18.72385 -17.90905 -17.15832 -16.93814 -16.55593 -16.27011 -15.86629 -15.24331 -14.93819 -14.71673 -14.58827 -14.21971 -14.19935 -14.05313 -13.85651 -13.54503 -13.44900 -13.19311 -13.02946 -12.96686 -12.75057 -12.51819 -12.37440 -12.24423 -12.15840 -11.88171 -11.73610 -11.56043 -11.43743 -10.84808 -10.84477 -10.33870 -10.31188 -9.47232 -8.68978 -8.35491 -6.40547 1.28885 1.33216 1.34683 1.43299 1.68459 2.21636 2.29168 2.67461 2.98893 3.11470 3.42881 3.63005 3.70603 3.86848 3.96333 4.07066 4.11395 4.20466 4.29275 4.35793 4.43266 4.47868 4.49587 4.65543 4.74620 4.75465 4.79247 4.84222 4.88299 4.92867 4.95096 5.03761 5.09231 5.13817 5.32505 5.43890 5.50177 5.59576 5.71196 5.74403 5.91447 6.03091 6.17275 6.22843 6.60713 6.64267 7.19734 7.38087 8.81484 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.005253 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.907957 B = 5329.430613 C = 5951.632615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.186 4.186 3 C 0.131 3.869 4 N -0.592 5.592 5 C 0.231 3.769 6 C -0.535 4.535 7 H 0.029 0.971 8 C 0.014 3.986 9 N -0.944 5.944 10 Si 0.945 3.055 11 H -0.277 1.277 12 H -0.273 1.273 13 H -0.239 1.239 14 C 0.511 3.489 15 O -0.571 6.571 16 C 0.036 3.964 17 H 0.114 0.886 18 C 0.028 3.972 19 N -0.508 5.508 20 C 0.019 3.981 21 C -0.012 4.012 22 N -0.522 5.522 23 C 0.015 3.985 24 C 0.037 3.963 25 H 0.099 0.901 26 C -0.138 4.138 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.017 0.983 34 H 0.269 0.731 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -15.912 -16.883 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.009 3.991 4 N -0.322 5.322 5 C 0.108 3.892 6 C -0.574 4.574 7 H 0.047 0.953 8 C -0.184 4.184 9 N -0.584 5.584 10 Si 0.768 3.232 11 H -0.203 1.203 12 H -0.199 1.199 13 H -0.162 1.162 14 C 0.299 3.701 15 O -0.451 6.451 16 C -0.078 4.078 17 H 0.131 0.869 18 C -0.102 4.102 19 N -0.230 5.230 20 C -0.111 4.111 21 C -0.142 4.142 22 N -0.244 5.244 23 C -0.114 4.114 24 C -0.073 4.073 25 H 0.117 0.883 26 C -0.195 4.195 27 H 0.119 0.881 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.966 -15.806 -16.295 22.722 hybrid contribution 0.058 0.518 1.244 1.349 sum 1.024 -15.288 -15.051 21.478 Atomic orbital electron populations 1.24078 0.95347 1.03070 0.97657 1.23360 0.96750 0.97829 1.02531 1.20861 0.91243 0.96732 0.90249 1.47901 1.08481 1.65586 1.10266 1.19243 0.95645 0.93554 0.80732 1.21535 1.44211 0.92925 0.98732 0.95309 1.25807 0.95222 0.96197 1.01203 1.70050 1.50101 1.12362 1.25895 0.85752 0.78935 0.79605 0.78900 1.20272 1.19850 1.16245 1.20896 0.81670 0.76129 0.91376 1.90468 1.52005 1.53305 1.49339 1.22292 0.90794 1.01411 0.93280 0.86852 1.23102 0.94845 0.89771 1.02514 1.64040 1.10857 1.40534 1.07547 1.22827 0.97821 0.97266 0.93183 1.23350 1.00658 0.89892 1.00257 1.63551 1.08320 1.43466 1.09030 1.23166 1.01617 0.98471 0.88129 1.22577 0.96919 0.95591 0.92199 0.88267 1.21881 0.99474 1.02348 0.95831 0.88090 0.86345 0.86638 0.90510 0.88077 0.93539 0.96466 0.92249 0.86574 0.90404 0.88420 0.91556 0.90068 0.89010 0.89223 0.89246 0.92592 0.90230 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 14.32 67.78 0.97 -2.42 16 2 C -0.19 -4.48 8.99 25.64 0.23 -4.25 16 3 C 0.13 3.93 5.37 85.63 0.46 4.39 16 4 N -0.59 -24.12 2.44 -830.48 -2.03 -26.15 16 5 C 0.23 11.35 4.28 85.63 0.37 11.72 16 6 C -0.54 -31.80 9.94 25.60 0.25 -31.54 16 7 H 0.03 1.91 8.06 -2.92 -0.02 1.89 16 8 C 0.01 0.83 5.47 84.65 0.46 1.29 16 9 N -0.94 -60.15 13.96 21.45 0.30 -59.85 16 10 Si 0.95 44.94 27.47 68.60 1.88 46.83 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 14 C 0.51 21.05 6.53 87.66 0.57 21.62 16 15 O -0.57 -28.65 12.91 -3.05 -0.04 -28.69 16 16 C 0.04 1.09 1.99 44.17 0.09 1.17 16 17 H 0.11 3.19 7.06 -2.39 -0.02 3.18 16 18 C 0.03 0.65 3.69 86.29 0.32 0.97 16 19 N -0.51 -11.13 5.24 -866.56 -4.54 -15.68 16 20 C 0.02 0.46 6.14 86.31 0.53 0.99 16 21 C -0.01 -0.38 5.72 86.31 0.49 0.12 16 22 N -0.52 -15.92 5.12 -871.04 -4.46 -20.38 16 23 C 0.02 0.32 5.79 86.29 0.50 0.82 16 24 C 0.04 0.65 3.05 44.91 0.14 0.79 16 25 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 26 C -0.14 -1.83 8.63 71.98 0.62 -1.21 16 27 H 0.10 2.08 7.86 -2.91 -0.02 2.06 16 28 H 0.12 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.12 2.65 5.86 -2.91 -0.02 2.64 16 30 H 0.08 2.48 7.79 -2.39 -0.02 2.46 16 31 H 0.10 2.47 5.58 -2.39 -0.01 2.45 16 32 H 0.05 2.13 7.13 -2.39 -0.02 2.12 16 33 H 0.02 0.92 6.79 -2.39 -0.02 0.90 16 34 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.12 2.15 6.08 -2.39 -0.01 2.13 16 36 H 0.08 2.02 5.10 -2.38 -0.01 2.01 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 40 H 0.09 3.61 4.86 -6.18 -0.03 3.58 16 41 H 0.09 1.74 7.61 -2.39 -0.02 1.72 16 42 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 0.78 6.31 -2.39 -0.02 0.76 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -75.67 337.25 -1.99 -77.66 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.90 Total: 21.80 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 6.00 Total: 4.46 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -10.74 Total: -122.06 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.04 Total: -28.69 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.83 kcal Total: -75.67 -1.99 -77.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520190770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.569 kcal (2) G-P(sol) polarization free energy of solvation -75.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds