Wall clock time and date at job start Fri Apr 10 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34819 * 126.59618 * 2 1 4 4 C 1.36595 * 106.83582 * 180.14718 * 3 2 1 5 5 C 1.47531 * 125.76593 * 179.89324 * 4 3 2 6 6 O 1.21591 * 119.99694 * 359.71629 * 5 4 3 7 7 N 1.34773 * 119.99931 * 179.71596 * 5 4 3 8 8 C 1.46500 * 120.00002 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.01688 * 325.06598 * 8 7 5 10 10 C 1.53876 * 110.03082 * 86.45203 * 8 7 5 11 11 C 1.54267 * 106.59870 * 119.28660 * 10 8 7 12 12 C 1.54891 * 104.19324 * 336.39035 * 11 10 8 13 13 C 1.54261 * 110.03182 * 203.61914 * 8 7 5 14 14 H 1.08999 * 110.48469 * 145.64718 * 13 8 7 15 15 C 1.52994 * 110.48660 * 23.00351 * 13 8 7 16 16 N 1.46506 * 109.47382 * 175.00024 * 15 13 8 17 17 C 1.36933 * 120.00280 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99858 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99785 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00393 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99680 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47405 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47041 * 120.00115 * 21 19 17 24 24 H 1.48496 * 109.47157 * 239.99777 * 21 19 17 25 25 N 1.34397 * 108.46513 * 359.63317 * 4 3 2 26 26 N 1.28761 * 109.52043 * 0.22227 * 25 4 3 27 27 H 1.08999 * 109.47722 * 270.27644 * 1 2 3 28 28 H 1.09000 * 109.47585 * 30.27967 * 1 2 3 29 29 H 1.09004 * 109.47136 * 150.27456 * 1 2 3 30 30 H 1.07997 * 126.57470 * 0.02562 * 3 2 1 31 31 H 0.96999 * 120.00052 * 359.97438 * 7 5 4 32 32 H 1.08995 * 110.03160 * 238.56849 * 10 8 7 33 33 H 1.08998 * 110.03319 * 359.97438 * 10 8 7 34 34 H 1.09004 * 110.48597 * 95.06674 * 11 10 8 35 35 H 1.08994 * 110.48679 * 217.71200 * 11 10 8 36 36 H 1.09005 * 110.75269 * 279.62515 * 12 11 10 37 37 H 1.09004 * 110.91555 * 156.33330 * 12 11 10 38 38 H 1.09002 * 109.47471 * 294.99772 * 15 13 8 39 39 H 1.08999 * 109.47564 * 54.99923 * 15 13 8 40 40 H 0.96999 * 119.99567 * 359.97438 * 16 15 13 41 41 H 0.97000 * 120.00406 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6206 -0.0034 5 6 4.7704 1.4557 -0.0068 6 8 4.6755 2.6679 -0.0120 7 7 5.9866 0.8749 -0.0042 8 6 7.1943 1.7041 -0.0070 9 1 7.0268 2.6052 -0.5971 10 6 7.5778 2.0818 1.4345 11 6 8.9849 1.5004 1.6830 12 6 9.1012 0.3391 0.6646 13 6 8.3817 0.9063 -0.5842 14 1 9.0479 1.5640 -1.1424 15 6 7.8797 -0.2313 -1.4757 16 7 9.0218 -0.8985 -2.1057 17 6 8.8159 -1.9542 -2.9531 18 1 7.8116 -2.2952 -3.1568 19 6 9.8980 -2.5860 -3.5504 20 7 11.1219 -2.1700 -3.3026 21 14 9.6172 -4.0266 -4.7059 22 1 8.1610 -4.2956 -4.8170 23 1 10.1633 -3.6989 -6.0475 24 1 10.3041 -5.2302 -4.1725 25 7 3.5239 -0.7230 0.0028 26 7 2.3008 -1.1257 0.0051 27 1 -0.3634 0.0050 1.0276 28 1 -0.3634 0.8874 -0.5182 29 1 -0.3634 -0.8925 -0.5096 30 1 1.9560 2.1161 0.0004 31 1 6.0623 -0.0921 0.0004 32 1 7.5972 3.1661 1.5438 33 1 6.8650 1.6486 2.1362 34 1 9.7485 2.2541 1.4910 35 1 9.0673 1.1235 2.7024 36 1 8.5910 -0.5507 1.0336 37 1 10.1455 0.1195 0.4425 38 1 7.3273 -0.9503 -0.8708 39 1 7.2247 0.1736 -2.2471 40 1 9.9237 -0.5919 -1.9231 41 1 11.8781 -2.6117 -3.7197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667725050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:11 Heat of formation + Delta-G solvation = 68.945008 kcal Electronic energy + Delta-G solvation = -23398.127525 eV Core-core repulsion = 19929.402173 eV Total energy + Delta-G solvation = -3468.725352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.33971 -39.83256 -37.80286 -34.91502 -34.32949 -33.32904 -31.35616 -31.13754 -28.59806 -28.38667 -27.30049 -24.52607 -23.62100 -22.42016 -22.24631 -20.76906 -20.23889 -19.11610 -18.36158 -17.07073 -16.46260 -16.39284 -15.86737 -15.07435 -14.91573 -14.59924 -14.56402 -14.41863 -13.81522 -13.65649 -13.45516 -13.36916 -12.99109 -12.77153 -12.30194 -12.22112 -11.49321 -11.43349 -11.18432 -10.83154 -10.81595 -10.73306 -10.61209 -10.42446 -10.29150 -10.24897 -10.03626 -9.89573 -9.62659 -9.47753 -8.85920 -8.81601 -6.85887 -5.71153 -2.99109 0.94627 1.63895 1.81643 3.23912 3.32153 3.47759 3.53765 3.56012 4.08581 4.09590 4.55268 4.56604 4.62838 4.75918 4.83728 4.86330 4.89408 5.13992 5.16398 5.52189 5.59727 5.60546 5.71407 5.75967 5.85790 5.91639 6.00032 6.08553 6.11181 6.18459 6.29654 6.35378 6.59129 6.61564 6.71732 6.83663 6.90488 7.56617 7.77476 7.85733 8.27320 8.47963 9.59483 10.17155 10.52279 11.51879 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.004313 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.734236 B = 6490.521825 C = 8339.467570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.367 5.367 3 C 0.090 3.910 4 C -0.099 4.099 5 C 0.604 3.396 6 O -0.547 6.547 7 N -0.700 5.700 8 C 0.148 3.852 9 H 0.090 0.910 10 C -0.131 4.131 11 C -0.125 4.125 12 C -0.114 4.114 13 C -0.107 4.107 14 H 0.089 0.911 15 C 0.162 3.838 16 N -0.729 5.729 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 N -0.198 5.198 26 N -0.065 5.065 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.205 0.795 31 H 0.413 0.587 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.384 0.616 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.091 9.543 11.077 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.152 5.152 3 C -0.067 4.067 4 C -0.238 4.238 5 C 0.388 3.612 6 O -0.424 6.424 7 N -0.352 5.352 8 C 0.043 3.957 9 H 0.108 0.892 10 C -0.169 4.169 11 C -0.163 4.163 12 C -0.151 4.151 13 C -0.126 4.126 14 H 0.107 0.893 15 C 0.035 3.965 16 N -0.373 5.373 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 N -0.072 5.072 26 N -0.045 5.045 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.221 0.779 31 H 0.252 0.748 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.218 0.782 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.235 8.736 10.973 23.806 hybrid contribution -0.090 -0.144 -0.652 0.674 sum -19.326 8.592 10.320 23.533 Atomic orbital electron populations 1.22179 0.72631 1.05808 1.04673 1.50406 1.09120 1.05796 1.49881 1.23350 0.90180 0.94944 0.98206 1.21565 0.94725 0.90455 1.17078 1.16753 0.81941 0.86253 0.76300 1.90778 1.86792 1.13050 1.51801 1.46104 1.04618 1.11681 1.72789 1.21684 0.83466 0.94115 0.96415 0.89157 1.22574 0.97310 1.00858 0.96207 1.22384 0.96322 0.98241 0.99314 1.22521 1.01452 0.97211 0.93932 1.22478 0.95504 0.97809 0.96801 0.89297 1.20599 0.91335 0.91377 0.93236 1.42334 1.03698 1.37280 1.54018 1.19289 0.92824 1.06369 1.18237 0.91157 1.24714 0.95248 0.99991 1.01054 1.69666 0.97277 1.43478 1.47868 0.86136 0.77259 0.82402 0.80559 1.20559 1.21952 1.21893 1.74699 1.12756 1.10275 1.09462 1.82053 0.93494 1.06308 1.22691 0.89279 0.88435 0.88049 0.77860 0.74831 0.91377 0.91538 0.91628 0.91927 0.91376 0.90765 0.96373 0.96233 0.78228 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 11.51 59.84 0.69 1.00 16 2 N -0.37 -3.35 4.03 -67.86 -0.27 -3.62 16 3 C 0.09 0.88 11.31 -16.83 -0.19 0.69 16 4 C -0.10 -1.33 6.99 -83.55 -0.58 -1.92 16 5 C 0.60 9.02 7.81 -12.47 -0.10 8.92 16 6 O -0.55 -8.99 16.54 5.29 0.09 -8.90 16 7 N -0.70 -10.41 4.37 -53.77 -0.24 -10.64 16 8 C 0.15 2.15 3.10 -66.81 -0.21 1.95 16 9 H 0.09 1.36 7.60 -51.93 -0.39 0.97 16 10 C -0.13 -1.66 6.59 -25.61 -0.17 -1.83 16 11 C -0.12 -1.55 6.83 -25.07 -0.17 -1.72 16 12 C -0.11 -1.73 6.19 -24.74 -0.15 -1.89 16 13 C -0.11 -1.74 2.85 -88.97 -0.25 -2.00 16 14 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 15 C 0.16 3.31 4.72 -4.04 -0.02 3.29 16 16 N -0.73 -18.63 5.49 -59.91 -0.33 -18.96 16 17 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 18 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 21 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 N -0.20 -2.96 12.04 32.85 0.40 -2.56 16 26 N -0.06 -0.86 13.78 60.35 0.83 -0.03 16 27 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.20 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.41 6.35 6.19 -40.82 -0.25 6.10 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.86 7.92 -51.93 -0.41 0.44 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.08 7.97 -51.93 -0.41 0.67 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.38 6.40 -51.93 -0.33 0.05 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.38 10.22 7.64 -40.82 -0.31 9.91 16 41 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -35.10 344.75 -5.92 -41.02 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.89 Total: 9.35 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.40 Total: -0.92 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: 1.11 Total: -63.64 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.10 -5.92 -41.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667725050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.964 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds