Wall clock time and date at job start Fri Apr 10 2020 17:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34819 * 126.59618 * 2 1 4 4 C 1.36595 * 106.83582 * 180.14718 * 3 2 1 5 5 C 1.47531 * 125.76593 * 179.89324 * 4 3 2 6 6 O 1.21591 * 119.99694 * 359.71629 * 5 4 3 7 7 N 1.34773 * 119.99931 * 179.71596 * 5 4 3 8 8 C 1.46500 * 120.00002 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.01688 * 325.06598 * 8 7 5 10 10 C 1.53876 * 110.03082 * 86.45203 * 8 7 5 11 11 C 1.54267 * 106.59870 * 119.28660 * 10 8 7 12 12 C 1.54891 * 104.19324 * 336.39035 * 11 10 8 13 13 C 1.54261 * 110.03182 * 203.61914 * 8 7 5 14 14 H 1.08999 * 110.48469 * 145.64718 * 13 8 7 15 15 C 1.52994 * 110.48660 * 23.00351 * 13 8 7 16 16 N 1.46506 * 109.47382 * 175.00024 * 15 13 8 17 17 C 1.36933 * 120.00280 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99858 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99785 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00393 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99680 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47405 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47041 * 120.00115 * 21 19 17 24 24 H 1.48496 * 109.47157 * 239.99777 * 21 19 17 25 25 N 1.34397 * 108.46513 * 359.63317 * 4 3 2 26 26 N 1.28761 * 109.52043 * 0.22227 * 25 4 3 27 27 H 1.08999 * 109.47722 * 270.27644 * 1 2 3 28 28 H 1.09000 * 109.47585 * 30.27967 * 1 2 3 29 29 H 1.09004 * 109.47136 * 150.27456 * 1 2 3 30 30 H 1.07997 * 126.57470 * 0.02562 * 3 2 1 31 31 H 0.96999 * 120.00052 * 359.97438 * 7 5 4 32 32 H 1.08995 * 110.03160 * 238.56849 * 10 8 7 33 33 H 1.08998 * 110.03319 * 359.97438 * 10 8 7 34 34 H 1.09004 * 110.48597 * 95.06674 * 11 10 8 35 35 H 1.08994 * 110.48679 * 217.71200 * 11 10 8 36 36 H 1.09005 * 110.75269 * 279.62515 * 12 11 10 37 37 H 1.09004 * 110.91555 * 156.33330 * 12 11 10 38 38 H 1.09002 * 109.47471 * 294.99772 * 15 13 8 39 39 H 1.08999 * 109.47564 * 54.99923 * 15 13 8 40 40 H 0.96999 * 119.99567 * 359.97438 * 16 15 13 41 41 H 0.97000 * 120.00406 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5542 0.6206 -0.0034 5 6 4.7704 1.4557 -0.0068 6 8 4.6755 2.6679 -0.0120 7 7 5.9866 0.8749 -0.0042 8 6 7.1943 1.7041 -0.0070 9 1 7.0268 2.6052 -0.5971 10 6 7.5778 2.0818 1.4345 11 6 8.9849 1.5004 1.6830 12 6 9.1012 0.3391 0.6646 13 6 8.3817 0.9063 -0.5842 14 1 9.0479 1.5640 -1.1424 15 6 7.8797 -0.2313 -1.4757 16 7 9.0218 -0.8985 -2.1057 17 6 8.8159 -1.9542 -2.9531 18 1 7.8116 -2.2952 -3.1568 19 6 9.8980 -2.5860 -3.5504 20 7 11.1219 -2.1700 -3.3026 21 14 9.6172 -4.0266 -4.7059 22 1 8.1610 -4.2956 -4.8170 23 1 10.1633 -3.6989 -6.0475 24 1 10.3041 -5.2302 -4.1725 25 7 3.5239 -0.7230 0.0028 26 7 2.3008 -1.1257 0.0051 27 1 -0.3634 0.0050 1.0276 28 1 -0.3634 0.8874 -0.5182 29 1 -0.3634 -0.8925 -0.5096 30 1 1.9560 2.1161 0.0004 31 1 6.0623 -0.0921 0.0004 32 1 7.5972 3.1661 1.5438 33 1 6.8650 1.6486 2.1362 34 1 9.7485 2.2541 1.4910 35 1 9.0673 1.1235 2.7024 36 1 8.5910 -0.5507 1.0336 37 1 10.1455 0.1195 0.4425 38 1 7.3273 -0.9503 -0.8708 39 1 7.2247 0.1736 -2.2471 40 1 9.9237 -0.5919 -1.9231 41 1 11.8781 -2.6117 -3.7197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667725050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:10 Heat of formation + Delta-G solvation = 42.970244 kcal Electronic energy + Delta-G solvation = -23399.253875 eV Core-core repulsion = 19929.402173 eV Total energy + Delta-G solvation = -3469.851702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.20941 -41.02301 -39.04867 -36.25960 -35.65684 -34.47002 -33.31802 -32.03732 -30.20251 -29.20055 -28.23008 -26.34701 -24.69579 -24.05244 -23.17650 -21.80672 -21.38591 -20.47051 -19.49400 -18.93013 -17.40306 -17.23945 -16.98213 -16.62961 -16.18946 -15.82729 -15.66991 -15.56029 -15.16257 -15.10831 -14.74991 -14.45930 -14.09720 -13.94497 -13.55873 -13.15368 -13.11016 -12.85754 -12.66458 -12.32434 -12.20095 -12.14279 -11.95285 -11.82076 -11.64735 -11.53778 -11.44163 -11.32631 -11.19194 -10.92329 -10.41699 -10.00375 -8.99201 -7.95105 -5.23377 0.16376 0.60639 1.20170 1.46634 1.47119 1.57556 2.14973 2.24402 2.55612 3.19339 3.37579 3.44528 3.54923 3.70240 3.88793 3.90697 3.97838 4.19763 4.38387 4.42172 4.46936 4.52829 4.57332 4.59564 4.68850 4.69271 4.78787 4.80901 4.88399 5.04453 5.13603 5.25165 5.27480 5.37937 5.46936 5.47733 5.52680 5.57269 6.27444 6.42266 6.89168 7.12964 7.34343 8.09111 8.34298 9.28459 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.004313 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.734236 B = 6490.521825 C = 8339.467570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.351 5.351 3 C 0.112 3.888 4 C -0.130 4.130 5 C 0.605 3.395 6 O -0.565 6.565 7 N -0.704 5.704 8 C 0.153 3.847 9 H 0.086 0.914 10 C -0.122 4.122 11 C -0.113 4.113 12 C -0.112 4.112 13 C -0.099 4.099 14 H 0.085 0.915 15 C 0.167 3.833 16 N -0.739 5.739 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.071 4.071 20 N -0.966 5.966 21 Si 0.970 3.030 22 H -0.270 1.270 23 H -0.291 1.291 24 H -0.290 1.290 25 N -0.232 5.232 26 N -0.097 5.097 27 H 0.110 0.890 28 H 0.131 0.869 29 H 0.106 0.894 30 H 0.243 0.757 31 H 0.409 0.591 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.008 0.992 40 H 0.376 0.624 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.177 10.471 11.764 26.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.136 5.136 3 C -0.046 4.046 4 C -0.271 4.271 5 C 0.390 3.610 6 O -0.444 6.444 7 N -0.355 5.355 8 C 0.048 3.952 9 H 0.104 0.896 10 C -0.161 4.161 11 C -0.150 4.150 12 C -0.150 4.150 13 C -0.119 4.119 14 H 0.104 0.896 15 C 0.040 3.960 16 N -0.382 5.382 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.264 4.264 20 N -0.617 5.617 21 Si 0.800 3.200 22 H -0.195 1.195 23 H -0.219 1.219 24 H -0.217 1.217 25 N -0.105 5.105 26 N -0.078 5.078 27 H 0.128 0.872 28 H 0.150 0.850 29 H 0.124 0.876 30 H 0.259 0.741 31 H 0.247 0.753 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.026 0.974 40 H 0.209 0.791 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.383 9.650 11.674 26.204 hybrid contribution 0.398 -0.390 -0.860 1.025 sum -20.985 9.261 10.814 25.359 Atomic orbital electron populations 1.22736 0.69230 1.07772 1.06691 1.50775 1.10790 1.04565 1.47451 1.23880 0.88847 0.96377 0.95520 1.21600 0.95569 0.90261 1.19623 1.16930 0.82247 0.86206 0.75591 1.90752 1.87098 1.13657 1.52862 1.46130 1.04978 1.11415 1.72956 1.21639 0.82605 0.93340 0.97620 0.89570 1.22514 0.97291 1.01766 0.94517 1.22327 0.96488 0.97112 0.99118 1.22461 1.00069 0.98151 0.94299 1.22361 0.96470 0.96478 0.96551 0.89634 1.20658 0.89751 0.92363 0.93227 1.42495 1.04634 1.37051 1.54013 1.19622 0.92826 1.06941 1.18319 0.91230 1.25503 0.95072 1.02800 1.03009 1.69807 0.97923 1.44842 1.49136 0.85118 0.77533 0.79103 0.78283 1.19503 1.21853 1.21750 1.74659 1.13926 1.11275 1.10671 1.81941 0.93613 1.08145 1.24054 0.87164 0.85044 0.87574 0.74112 0.75314 0.89897 0.91463 0.90349 0.90316 0.92293 0.92290 0.96194 0.97365 0.79150 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.51 127.77 1.47 1.74 16 2 N -0.35 -5.65 4.03 -368.60 -1.49 -7.14 16 3 C 0.11 1.93 11.31 83.85 0.95 2.88 16 4 C -0.13 -3.44 6.99 40.82 0.29 -3.15 16 5 C 0.60 17.86 7.81 86.69 0.68 18.53 16 6 O -0.56 -18.00 16.54 -4.00 -0.07 -18.06 16 7 N -0.70 -21.02 4.37 -442.28 -1.93 -22.95 16 8 C 0.15 4.38 3.10 45.71 0.14 4.52 16 9 H 0.09 2.56 7.60 -2.39 -0.02 2.54 16 10 C -0.12 -2.90 6.59 31.32 0.21 -2.69 16 11 C -0.11 -2.60 6.83 31.67 0.22 -2.39 16 12 C -0.11 -3.42 6.19 31.89 0.20 -3.22 16 13 C -0.10 -3.28 2.85 -9.72 -0.03 -3.31 16 14 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 15 C 0.17 6.98 4.72 86.38 0.41 7.39 16 16 N -0.74 -38.70 5.49 -343.45 -1.89 -40.59 16 17 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 18 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 19 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 20 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 21 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 25 N -0.23 -7.00 12.04 -49.99 -0.60 -7.60 16 26 N -0.10 -2.54 13.78 37.02 0.51 -2.03 16 27 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.13 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.24 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.41 12.92 6.19 -92.71 -0.57 12.34 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.61 7.92 -2.39 -0.02 1.59 16 34 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.89 7.97 -2.38 -0.02 1.87 16 37 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.02 0.85 6.40 -2.39 -0.02 0.83 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.38 20.63 7.64 -92.71 -0.71 19.92 16 41 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -77.06 344.75 2.45 -74.61 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.22 Total: 30.75 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.83 Total: 3.18 kcal Atomic # 7 Polarization: -134.91 SS G_CDS: -5.12 Total: -140.03 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.07 Total: -18.06 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -77.06 2.45 -74.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667725050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.581 kcal (2) G-P(sol) polarization free energy of solvation -77.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds