Wall clock time and date at job start Fri Apr 10 2020 17:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34816 * 126.59585 * 2 1 4 4 C 1.36592 * 106.84453 * 179.97438 * 3 2 1 5 5 C 1.47523 * 125.77464 * 179.97438 * 4 3 2 6 6 O 1.21594 * 119.99896 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00033 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99914 * 179.97438 * 7 5 4 9 9 H 1.09006 * 110.81544 * 31.66301 * 8 7 5 10 10 C 1.55030 * 110.87608 * 268.31822 * 8 7 5 11 11 C 1.54269 * 104.28030 * 203.89970 * 10 8 7 12 12 C 1.53875 * 106.59701 * 23.51721 * 11 10 8 13 13 C 1.54260 * 106.60118 * 359.97438 * 12 11 10 14 14 H 1.09003 * 110.48363 * 95.20604 * 13 12 11 15 15 C 1.53004 * 110.49056 * 217.71334 * 13 12 11 16 16 N 1.46504 * 109.46932 * 291.76188 * 15 13 12 17 17 C 1.36934 * 119.99567 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00537 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99798 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00134 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 270.00112 * 21 19 17 23 23 H 1.48496 * 109.47029 * 30.00128 * 21 19 17 24 24 H 1.48499 * 109.47352 * 149.99958 * 21 19 17 25 25 N 1.34405 * 108.45801 * 0.23809 * 4 3 2 26 26 N 1.28766 * 109.51939 * 359.59124 * 25 4 3 27 27 H 1.08999 * 109.46593 * 90.00460 * 1 2 3 28 28 H 1.09002 * 109.47097 * 209.99920 * 1 2 3 29 29 H 1.08994 * 109.47187 * 330.00839 * 1 2 3 30 30 H 1.08005 * 126.57632 * 359.97438 * 3 2 1 31 31 H 0.96997 * 119.99930 * 359.97438 * 7 5 4 32 32 H 1.08996 * 110.52317 * 85.15388 * 10 8 7 33 33 H 1.08997 * 110.47400 * 322.61936 * 10 8 7 34 34 H 1.09005 * 110.03070 * 264.23254 * 11 10 8 35 35 H 1.08998 * 110.03310 * 142.79973 * 11 10 8 36 36 H 1.09008 * 110.03199 * 240.71455 * 12 11 10 37 37 H 1.08997 * 110.07518 * 119.31277 * 12 11 10 38 38 H 1.08998 * 109.47524 * 171.75832 * 15 13 12 39 39 H 1.08997 * 109.47093 * 51.75733 * 15 13 12 40 40 H 0.97000 * 119.99825 * 359.97438 * 16 15 13 41 41 H 0.97005 * 119.99717 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6208 0.0006 5 6 4.7704 1.4558 0.0003 6 8 4.6755 2.6681 -0.0011 7 7 5.9866 0.8750 0.0014 8 6 7.1943 1.7043 0.0006 9 1 7.0226 2.6393 0.5340 10 6 7.6742 1.9798 -1.4476 11 6 9.1793 2.2838 -1.2984 12 6 9.6341 1.6187 0.0125 13 6 8.3896 0.9343 0.6145 14 1 8.3548 -0.1162 0.3257 15 6 8.3885 1.0696 2.1385 16 7 9.4815 0.2721 2.7003 17 6 9.6789 0.2393 4.0549 18 1 9.0292 0.8017 4.7092 19 6 10.7142 -0.5167 4.5873 20 7 11.5058 -1.2025 3.7901 21 14 10.9840 -0.5610 6.4353 22 1 11.9119 0.5305 6.8263 23 1 9.6842 -0.3783 7.1298 24 1 11.5704 -1.8703 6.8187 25 7 3.5239 -0.7229 -0.0044 26 7 2.3009 -1.1257 0.0007 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9560 2.1162 -0.0004 31 1 6.0623 -0.0920 0.0029 32 1 7.1511 2.8394 -1.8665 33 1 7.5229 1.1002 -2.0733 34 1 9.3392 3.3608 -1.2459 35 1 9.7301 1.8647 -2.1404 36 1 10.0150 2.3729 0.7013 37 1 10.4061 0.8770 -0.1925 38 1 7.4377 0.7129 2.5343 39 1 8.5255 2.1162 2.4104 40 1 10.0653 -0.2326 2.1127 41 1 11.3659 -1.1793 2.8305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667725051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:16 Heat of formation + Delta-G solvation = 62.119317 kcal Electronic energy + Delta-G solvation = -23102.516464 eV Core-core repulsion = 19633.495128 eV Total energy + Delta-G solvation = -3469.021336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.42887 -39.75205 -37.90862 -35.00837 -34.66827 -33.56390 -31.38957 -31.23517 -28.57056 -28.29313 -27.34578 -24.34577 -23.55029 -22.51295 -22.27495 -20.84344 -20.38254 -19.57834 -18.17876 -17.21385 -16.56824 -16.48870 -16.30686 -15.26207 -14.85250 -14.77508 -14.67951 -14.11014 -13.69393 -13.66369 -13.62287 -13.37091 -13.19808 -13.08017 -12.39201 -12.24092 -12.00084 -11.53011 -11.09467 -10.97474 -10.71631 -10.69854 -10.62655 -10.47763 -10.37796 -10.15696 -10.08149 -9.96398 -9.56482 -9.15306 -8.88631 -8.81198 -6.92753 -6.04405 -3.03060 0.86219 1.53569 1.73232 3.11509 3.22557 3.55751 3.61006 3.74917 3.99417 4.01953 4.47944 4.50521 4.62510 4.71683 4.78736 4.80074 4.84156 5.04668 5.07817 5.43511 5.49451 5.58712 5.65346 5.67891 5.72786 5.81087 5.91840 6.00228 6.05206 6.10376 6.24002 6.29182 6.44842 6.54478 6.58982 6.78563 6.89689 7.44711 7.74676 7.88019 8.16666 8.82552 9.30354 10.16637 10.32184 11.44598 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.003601 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.691743 B = 7772.768990 C = 9173.150315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.366 5.366 3 C 0.092 3.908 4 C -0.099 4.099 5 C 0.606 3.394 6 O -0.543 6.543 7 N -0.700 5.700 8 C 0.146 3.854 9 H 0.101 0.899 10 C -0.132 4.132 11 C -0.121 4.121 12 C -0.112 4.112 13 C -0.104 4.104 14 H 0.078 0.922 15 C 0.167 3.833 16 N -0.742 5.742 17 C -0.329 4.329 18 H 0.063 0.937 19 C -0.047 4.047 20 N -0.946 5.946 21 Si 1.082 2.918 22 H -0.296 1.296 23 H -0.295 1.295 24 H -0.288 1.288 25 N -0.201 5.201 26 N -0.065 5.065 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.206 0.794 31 H 0.409 0.591 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.019 0.981 39 H 0.021 0.979 40 H 0.367 0.633 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.190 5.884 -12.945 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.151 5.151 3 C -0.065 4.065 4 C -0.238 4.238 5 C 0.390 3.610 6 O -0.419 6.419 7 N -0.349 5.349 8 C 0.041 3.959 9 H 0.119 0.881 10 C -0.171 4.171 11 C -0.159 4.159 12 C -0.150 4.150 13 C -0.124 4.124 14 H 0.097 0.903 15 C 0.039 3.961 16 N -0.388 5.388 17 C -0.460 4.460 18 H 0.081 0.919 19 C -0.244 4.244 20 N -0.592 5.592 21 Si 0.914 3.086 22 H -0.224 1.224 23 H -0.222 1.222 24 H -0.214 1.214 25 N -0.075 5.075 26 N -0.046 5.046 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.222 0.778 31 H 0.245 0.755 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.200 0.800 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.453 4.716 -11.563 23.964 hybrid contribution -1.117 1.062 -1.350 2.049 sum -21.570 5.778 -12.912 25.795 Atomic orbital electron populations 1.22197 0.72508 1.05873 1.04748 1.50397 1.09170 1.05748 1.49782 1.23374 0.90152 0.95007 0.97965 1.21537 0.94712 0.90423 1.17174 1.16731 0.81829 0.86286 0.76190 1.90796 1.86688 1.13028 1.51412 1.45770 1.04843 1.11082 1.73236 1.22099 0.82713 0.94907 0.96142 0.88133 1.22734 0.96097 1.01683 0.96582 1.22090 0.95028 1.00692 0.98122 1.22072 0.97054 1.00031 0.95870 1.22436 0.93421 0.99550 0.96968 0.90340 1.20618 0.91761 0.94773 0.88918 1.42337 1.34569 1.57045 1.04803 1.20068 1.14523 1.27847 0.83532 0.91859 1.25752 0.94721 0.97054 1.06876 1.70850 1.40210 1.43878 1.04266 0.83197 0.75142 0.76207 0.74088 1.22364 1.22220 1.21414 1.74666 1.12869 1.10304 1.09681 1.82032 0.93464 1.06373 1.22709 0.89208 0.88016 0.88356 0.77773 0.75502 0.91407 0.91433 0.91785 0.91850 0.90949 0.91458 0.96327 0.96110 0.80006 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.26 11.51 59.85 0.69 0.95 16 2 N -0.37 -3.10 4.03 -67.86 -0.27 -3.38 16 3 C 0.09 0.85 11.31 -16.84 -0.19 0.66 16 4 C -0.10 -1.26 6.99 -83.55 -0.58 -1.85 16 5 C 0.61 8.76 7.82 -12.48 -0.10 8.66 16 6 O -0.54 -8.87 16.51 5.28 0.09 -8.78 16 7 N -0.70 -9.87 5.18 -52.86 -0.27 -10.15 16 8 C 0.15 2.12 2.70 -65.88 -0.18 1.95 16 9 H 0.10 1.60 7.47 -51.93 -0.39 1.21 16 10 C -0.13 -1.66 6.52 -24.99 -0.16 -1.82 16 11 C -0.12 -1.50 6.80 -25.61 -0.17 -1.68 16 12 C -0.11 -1.72 6.14 -25.62 -0.16 -1.88 16 13 C -0.10 -1.71 2.53 -88.97 -0.22 -1.94 16 14 H 0.08 1.30 8.01 -51.93 -0.42 0.88 16 15 C 0.17 3.52 5.58 -4.04 -0.02 3.50 16 16 N -0.74 -19.21 5.46 -59.91 -0.33 -19.53 16 17 C -0.33 -9.60 9.99 -15.06 -0.15 -9.75 16 18 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.05 -1.40 5.50 -17.43 -0.10 -1.49 16 20 N -0.95 -29.84 13.70 55.49 0.76 -29.08 16 21 Si 1.08 26.72 29.92 -169.99 -5.09 21.64 16 22 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 N -0.20 -2.79 12.04 32.85 0.40 -2.39 16 26 N -0.07 -0.81 13.78 60.35 0.83 0.02 16 27 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 28 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.21 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.41 5.56 8.25 -40.82 -0.34 5.22 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.21 7.74 -51.92 -0.40 0.81 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 40 H 0.37 9.60 6.41 -40.82 -0.26 9.34 16 41 H 0.25 7.88 6.77 -40.82 -0.28 7.61 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -36.61 347.16 -5.93 -42.55 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.93 Total: 8.57 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.35 Total: -4.70 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: 1.11 Total: -64.51 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 26.72 SS G_CDS: -5.09 Total: 21.64 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.61 -5.93 -42.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667725051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.668 kcal (2) G-P(sol) polarization free energy of solvation -36.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds