Wall clock time and date at job start Fri Apr 10 2020 17:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34816 * 126.59585 * 2 1 4 4 C 1.36592 * 106.84453 * 179.97438 * 3 2 1 5 5 C 1.47523 * 125.77464 * 179.97438 * 4 3 2 6 6 O 1.21594 * 119.99896 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00033 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99914 * 179.97438 * 7 5 4 9 9 H 1.09006 * 110.81544 * 31.66301 * 8 7 5 10 10 C 1.55030 * 110.87608 * 268.31822 * 8 7 5 11 11 C 1.54269 * 104.28030 * 203.89970 * 10 8 7 12 12 C 1.53875 * 106.59701 * 23.51721 * 11 10 8 13 13 C 1.54260 * 106.60118 * 359.97438 * 12 11 10 14 14 H 1.09003 * 110.48363 * 95.20604 * 13 12 11 15 15 C 1.53004 * 110.49056 * 217.71334 * 13 12 11 16 16 N 1.46504 * 109.46932 * 291.76188 * 15 13 12 17 17 C 1.36934 * 119.99567 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00537 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99798 * 179.97438 * 17 16 15 20 20 N 1.31624 * 120.00134 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00229 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 270.00112 * 21 19 17 23 23 H 1.48496 * 109.47029 * 30.00128 * 21 19 17 24 24 H 1.48499 * 109.47352 * 149.99958 * 21 19 17 25 25 N 1.34405 * 108.45801 * 0.23809 * 4 3 2 26 26 N 1.28766 * 109.51939 * 359.59124 * 25 4 3 27 27 H 1.08999 * 109.46593 * 90.00460 * 1 2 3 28 28 H 1.09002 * 109.47097 * 209.99920 * 1 2 3 29 29 H 1.08994 * 109.47187 * 330.00839 * 1 2 3 30 30 H 1.08005 * 126.57632 * 359.97438 * 3 2 1 31 31 H 0.96997 * 119.99930 * 359.97438 * 7 5 4 32 32 H 1.08996 * 110.52317 * 85.15388 * 10 8 7 33 33 H 1.08997 * 110.47400 * 322.61936 * 10 8 7 34 34 H 1.09005 * 110.03070 * 264.23254 * 11 10 8 35 35 H 1.08998 * 110.03310 * 142.79973 * 11 10 8 36 36 H 1.09008 * 110.03199 * 240.71455 * 12 11 10 37 37 H 1.08997 * 110.07518 * 119.31277 * 12 11 10 38 38 H 1.08998 * 109.47524 * 171.75832 * 15 13 12 39 39 H 1.08997 * 109.47093 * 51.75733 * 15 13 12 40 40 H 0.97000 * 119.99825 * 359.97438 * 16 15 13 41 41 H 0.97005 * 119.99717 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6208 0.0006 5 6 4.7704 1.4558 0.0003 6 8 4.6755 2.6681 -0.0011 7 7 5.9866 0.8750 0.0014 8 6 7.1943 1.7043 0.0006 9 1 7.0226 2.6393 0.5340 10 6 7.6742 1.9798 -1.4476 11 6 9.1793 2.2838 -1.2984 12 6 9.6341 1.6187 0.0125 13 6 8.3896 0.9343 0.6145 14 1 8.3548 -0.1162 0.3257 15 6 8.3885 1.0696 2.1385 16 7 9.4815 0.2721 2.7003 17 6 9.6789 0.2393 4.0549 18 1 9.0292 0.8017 4.7092 19 6 10.7142 -0.5167 4.5873 20 7 11.5058 -1.2025 3.7901 21 14 10.9840 -0.5610 6.4353 22 1 11.9119 0.5305 6.8263 23 1 9.6842 -0.3783 7.1298 24 1 11.5704 -1.8703 6.8187 25 7 3.5239 -0.7229 -0.0044 26 7 2.3009 -1.1257 0.0007 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9560 2.1162 -0.0004 31 1 6.0623 -0.0920 0.0029 32 1 7.1511 2.8394 -1.8665 33 1 7.5229 1.1002 -2.0733 34 1 9.3392 3.3608 -1.2459 35 1 9.7301 1.8647 -2.1404 36 1 10.0150 2.3729 0.7013 37 1 10.4061 0.8770 -0.1925 38 1 7.4377 0.7129 2.5343 39 1 8.5255 2.1162 2.4104 40 1 10.0653 -0.2326 2.1127 41 1 11.3659 -1.1793 2.8305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667725051.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:14 Heat of formation + Delta-G solvation = 34.457219 kcal Electronic energy + Delta-G solvation = -23103.715983 eV Core-core repulsion = 19633.495128 eV Total energy + Delta-G solvation = -3470.220854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.24370 -40.91680 -39.16995 -36.64341 -35.70012 -34.71524 -33.31836 -32.08732 -30.03267 -29.24300 -28.25660 -26.12973 -24.83075 -24.02822 -23.20417 -21.83875 -21.60537 -20.77691 -19.50955 -18.97188 -17.72974 -17.26924 -17.18037 -16.87555 -15.85821 -15.80429 -15.77193 -15.64301 -15.41694 -15.08515 -14.91530 -14.38387 -14.11494 -13.97362 -13.67609 -13.24000 -13.15554 -12.74572 -12.66857 -12.44603 -12.29835 -12.11332 -11.92869 -11.86122 -11.70840 -11.35600 -11.35109 -11.30311 -11.21599 -10.94542 -10.45423 -10.04113 -9.12613 -8.42050 -5.35236 0.12649 0.55755 1.16147 1.56802 1.67917 1.82486 2.06277 2.18890 2.69393 3.14156 3.35945 3.38799 3.48129 3.60932 3.80416 3.86135 3.93777 4.03099 4.34225 4.36675 4.39277 4.39670 4.45745 4.49964 4.59375 4.65581 4.67337 4.75663 4.88797 4.97139 5.08179 5.14809 5.20706 5.23135 5.42876 5.43393 5.50982 5.56092 6.36104 6.48869 6.84867 7.07239 7.08208 7.98466 8.09961 9.10397 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.003601 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.691743 B = 7772.768990 C = 9173.150315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.351 5.351 3 C 0.112 3.888 4 C -0.129 4.129 5 C 0.606 3.394 6 O -0.566 6.566 7 N -0.701 5.701 8 C 0.152 3.848 9 H 0.086 0.914 10 C -0.122 4.122 11 C -0.111 4.111 12 C -0.111 4.111 13 C -0.095 4.095 14 H 0.078 0.922 15 C 0.169 3.831 16 N -0.751 5.751 17 C -0.338 4.338 18 H 0.061 0.939 19 C -0.102 4.102 20 N -0.973 5.973 21 Si 1.130 2.870 22 H -0.282 1.282 23 H -0.276 1.276 24 H -0.290 1.290 25 N -0.230 5.230 26 N -0.094 5.094 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.130 0.870 30 H 0.241 0.759 31 H 0.411 0.589 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.007 0.993 39 H 0.015 0.985 40 H 0.363 0.637 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.068 6.871 -13.506 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.135 5.135 3 C -0.047 4.047 4 C -0.269 4.269 5 C 0.392 3.608 6 O -0.444 6.444 7 N -0.350 5.350 8 C 0.047 3.953 9 H 0.104 0.896 10 C -0.160 4.160 11 C -0.149 4.149 12 C -0.149 4.149 13 C -0.114 4.114 14 H 0.096 0.904 15 C 0.043 3.957 16 N -0.396 5.396 17 C -0.469 4.469 18 H 0.079 0.921 19 C -0.293 4.293 20 N -0.620 5.620 21 Si 0.955 3.045 22 H -0.209 1.209 23 H -0.202 1.202 24 H -0.216 1.216 25 N -0.104 5.104 26 N -0.075 5.075 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.149 0.851 30 H 0.257 0.743 31 H 0.247 0.753 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.033 0.967 40 H 0.196 0.804 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -22.389 5.697 -12.152 26.103 hybrid contribution -0.691 0.792 -1.181 1.581 sum -23.080 6.489 -13.333 27.433 Atomic orbital electron populations 1.22747 0.69171 1.07802 1.06735 1.50762 1.10809 1.04527 1.47435 1.23880 0.88929 0.96407 0.95452 1.21515 0.95358 0.90307 1.19751 1.16944 0.82249 0.86201 0.75428 1.90770 1.87071 1.13891 1.52690 1.45778 1.04879 1.11101 1.73246 1.21961 0.82170 0.93821 0.97340 0.89553 1.22671 0.95995 1.02458 0.94923 1.22042 0.94922 1.01172 0.96756 1.22025 0.96241 0.99449 0.97163 1.22289 0.95367 1.00094 0.93644 0.90392 1.20692 0.89587 0.93358 0.92096 1.42494 1.35595 1.57547 1.03984 1.20397 1.14221 1.27243 0.85080 0.92145 1.27225 0.94637 0.96749 1.10698 1.70959 1.41490 1.45553 1.04039 0.82592 0.76121 0.76336 0.69458 1.20906 1.20180 1.21626 1.74627 1.13952 1.11063 1.10720 1.81927 0.93577 1.08096 1.23915 0.87107 0.87461 0.85131 0.74259 0.75321 0.90572 0.90445 0.90683 0.89945 0.92777 0.92051 0.97482 0.96709 0.80448 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.51 127.77 1.47 1.67 16 2 N -0.35 -5.20 4.03 -368.60 -1.49 -6.69 16 3 C 0.11 1.82 11.31 83.85 0.95 2.77 16 4 C -0.13 -3.22 6.99 40.81 0.29 -2.94 16 5 C 0.61 17.39 7.82 86.69 0.68 18.07 16 6 O -0.57 -18.14 16.51 -4.01 -0.07 -18.21 16 7 N -0.70 -19.84 5.18 -439.40 -2.28 -22.12 16 8 C 0.15 4.38 2.70 46.32 0.12 4.51 16 9 H 0.09 2.76 7.47 -2.38 -0.02 2.75 16 10 C -0.12 -2.85 6.52 31.72 0.21 -2.64 16 11 C -0.11 -2.55 6.80 31.32 0.21 -2.34 16 12 C -0.11 -3.38 6.14 31.32 0.19 -3.19 16 13 C -0.09 -3.14 2.53 -9.73 -0.02 -3.16 16 14 H 0.08 2.61 8.01 -2.39 -0.02 2.59 16 15 C 0.17 7.34 5.58 86.38 0.48 7.82 16 16 N -0.75 -39.88 5.46 -343.44 -1.88 -41.76 16 17 C -0.34 -20.03 9.99 84.03 0.84 -19.19 16 18 H 0.06 3.55 7.83 -2.91 -0.02 3.52 16 19 C -0.10 -6.11 5.50 84.86 0.47 -5.64 16 20 N -0.97 -62.21 13.70 21.65 0.30 -61.92 16 21 Si 1.13 53.72 29.92 68.60 2.05 55.78 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 N -0.23 -6.40 12.04 -50.00 -0.60 -7.01 16 26 N -0.09 -2.29 13.78 37.02 0.51 -1.78 16 27 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.24 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.41 11.39 8.25 -92.71 -0.76 10.62 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.84 7.74 -2.38 -0.02 1.82 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.01 0.67 8.01 -2.39 -0.02 0.65 16 40 H 0.36 19.60 6.41 -92.71 -0.59 19.01 16 41 H 0.25 15.58 6.77 -92.70 -0.63 14.95 16 Total: -1.00 -80.53 347.16 2.27 -78.26 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.16 Total: 29.72 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 5.88 Total: -4.27 kcal Atomic # 7 Polarization: -135.84 SS G_CDS: -5.43 Total: -141.27 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.07 Total: -18.21 kcal Atomic # 14 Polarization: 53.72 SS G_CDS: 2.05 Total: 55.78 kcal Total: -80.53 2.27 -78.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667725051.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.713 kcal (2) G-P(sol) polarization free energy of solvation -80.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds