Wall clock time and date at job start Fri Apr 10 2020 17:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47141 * 2 1 4 4 C 1.53005 * 109.47010 * 239.99925 * 2 1 3 5 5 N 1.46501 * 109.46976 * 185.00248 * 4 2 1 6 6 C 1.36933 * 120.00069 * 180.02562 * 5 4 2 7 7 H 1.08007 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00281 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00003 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99974 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47235 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46936 * 120.00222 * 10 8 6 13 13 H 1.48507 * 109.46912 * 240.00074 * 10 8 6 14 14 N 1.46500 * 109.47072 * 120.00052 * 2 1 3 15 15 C 1.34773 * 120.00050 * 274.99595 * 14 2 1 16 16 O 1.21277 * 120.00143 * 0.02562 * 15 14 2 17 17 C 1.50705 * 120.00318 * 179.97438 * 15 14 2 18 18 N 1.46500 * 109.47383 * 180.02562 * 17 15 14 19 19 C 1.35306 * 125.86781 * 125.29463 * 18 17 15 20 20 C 1.35352 * 106.17827 * 180.18886 * 19 18 17 21 21 C 1.50697 * 126.75683 * 179.85285 * 20 19 18 22 22 C 1.53000 * 117.49504 * 16.09102 * 21 20 19 23 23 C 1.52997 * 60.00347 * 107.48912 * 22 21 20 24 24 N 1.33777 * 106.49092 * 359.59003 * 20 19 18 25 25 N 1.28628 * 108.88539 * 0.26502 * 24 20 19 26 26 H 1.08998 * 109.47461 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46862 * 300.00015 * 1 2 3 28 28 H 1.08997 * 109.47138 * 60.00043 * 1 2 3 29 29 H 1.08995 * 109.46940 * 305.00117 * 4 2 1 30 30 H 1.09002 * 109.46698 * 65.00374 * 4 2 1 31 31 H 0.97007 * 120.00216 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00161 * 180.02562 * 9 8 6 33 33 H 0.96999 * 120.00030 * 94.99764 * 14 2 1 34 34 H 1.08999 * 109.46680 * 60.00031 * 17 15 14 35 35 H 1.09002 * 109.46985 * 300.00735 * 17 15 14 36 36 H 1.08009 * 126.91407 * 0.04258 * 19 18 17 37 37 H 1.08990 * 115.56356 * 230.40274 * 21 20 19 38 38 H 1.09002 * 117.49696 * 214.98125 * 22 21 20 39 39 H 1.09002 * 117.50343 * 0.02562 * 22 21 20 40 40 H 1.08999 * 117.49685 * 252.51237 * 23 22 21 41 41 H 1.08999 * 117.52022 * 107.47599 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.1838 -1.4380 -2.2072 7 1 3.6467 -1.8432 -3.0521 8 6 5.5673 -1.5372 -2.1518 9 7 6.2218 -1.0439 -1.1220 10 14 6.5000 -2.3721 -3.5384 11 1 5.5396 -2.8386 -4.5705 12 1 7.4502 -1.4069 -4.1472 13 1 7.2518 -3.5341 -2.9998 14 7 2.0183 -0.6906 1.1962 15 6 2.1471 -0.0183 2.3571 16 8 1.8583 1.1583 2.4117 17 6 2.6488 -0.7288 3.5878 18 7 2.6977 0.2124 4.7093 19 6 2.0998 0.0450 5.9115 20 6 2.3985 1.1472 6.6381 21 6 1.9621 1.4421 8.0500 22 6 1.4253 0.2755 8.8817 23 6 2.8058 0.8604 9.1862 24 7 3.1622 1.9206 5.8582 25 7 3.3209 1.3386 4.7222 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7198 -1.2951 30 1 1.7516 -0.1583 -2.1370 31 1 3.9824 -0.4622 -0.4319 32 1 7.1885 -1.1129 -1.0835 33 1 2.2489 -1.6318 1.1526 34 1 3.6479 -1.1214 3.3986 35 1 1.9759 -1.5506 3.8326 36 1 1.5022 -0.7976 6.2270 37 1 1.5120 2.4220 8.2082 38 1 0.6218 0.4880 9.5870 39 1 1.3881 -0.7054 8.4077 40 1 3.6764 0.2645 8.9124 41 1 2.9110 1.4580 10.0917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669313241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:28 Heat of formation + Delta-G solvation = 104.360969 kcal Electronic energy + Delta-G solvation = -22901.759085 eV Core-core repulsion = 19434.569485 eV Total energy + Delta-G solvation = -3467.189600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.27565 -39.71880 -37.52232 -36.37296 -34.39710 -33.75736 -31.62233 -30.74589 -30.17537 -28.38292 -25.76116 -24.19868 -23.19293 -22.75076 -22.20325 -21.06790 -20.53929 -20.16633 -17.80057 -17.52366 -17.10052 -16.00495 -15.91223 -15.80745 -15.10706 -14.77658 -14.67037 -14.58783 -13.77029 -13.73328 -13.42194 -12.99061 -12.53554 -12.39953 -12.31481 -12.12141 -11.83433 -11.72053 -11.56079 -11.25114 -10.98294 -10.94730 -10.89556 -10.55390 -10.52649 -10.26903 -10.08825 -9.82036 -9.66225 -9.06493 -9.00499 -8.89403 -7.03983 -5.84638 -3.15255 1.55973 2.12825 2.51737 2.57847 3.24352 3.37851 3.43763 3.46174 3.54333 4.06243 4.38442 4.50436 4.58606 4.60901 4.64330 4.70315 4.83855 5.03021 5.16526 5.21185 5.33881 5.37487 5.46787 5.54937 5.55804 5.69997 5.81465 5.90162 5.92088 5.98891 6.08584 6.09381 6.27904 6.35100 6.45736 6.58247 6.78287 7.58031 7.62248 8.24497 8.32857 8.58921 9.44842 9.99523 10.34720 11.37475 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.003059 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.574070 B = 9150.701098 C =10016.475539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.089 0.911 4 C 0.145 3.855 5 N -0.732 5.732 6 C -0.245 4.245 7 H 0.071 0.929 8 C -0.011 4.011 9 N -0.929 5.929 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 N -0.704 5.704 15 C 0.504 3.496 16 O -0.517 6.517 17 C 0.093 3.907 18 N -0.277 5.277 19 C -0.052 4.052 20 C 0.006 3.994 21 C -0.068 4.068 22 C -0.171 4.171 23 C -0.166 4.166 24 N -0.268 5.268 25 N -0.043 5.043 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.035 0.965 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.406 0.594 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.187 0.813 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.887 -3.111 17.222 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 H 0.107 0.893 4 C 0.016 3.984 5 N -0.378 5.378 6 C -0.376 4.376 7 H 0.089 0.911 8 C -0.208 4.208 9 N -0.577 5.577 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 N -0.356 5.356 15 C 0.286 3.714 16 O -0.392 6.392 17 C -0.032 4.032 18 N -0.070 5.070 19 C -0.202 4.202 20 C -0.132 4.132 21 C -0.089 4.089 22 C -0.209 4.209 23 C -0.204 4.204 24 N -0.135 5.135 25 N -0.023 5.023 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.220 0.780 32 H 0.066 0.934 33 H 0.241 0.759 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.204 0.796 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.172 -1.376 16.231 20.334 hybrid contribution 0.218 -1.718 -0.188 1.742 sum -11.954 -3.094 16.042 20.244 Atomic orbital electron populations 1.22098 0.95322 1.01898 1.02285 1.21303 0.93382 0.98141 0.84108 0.89304 1.20988 0.86938 0.96975 0.93456 1.42373 0.99677 1.70347 1.25354 1.19247 0.89429 1.29628 0.99292 0.91053 1.24768 0.96461 1.01450 0.98091 1.69671 1.07291 1.50614 1.30174 0.86118 0.79914 0.78726 0.81383 1.20547 1.21796 1.21842 1.45849 1.66384 1.14460 1.08907 1.20070 0.79011 0.87704 0.84583 1.90810 1.48889 1.15016 1.84493 1.21949 1.06935 0.90342 0.83965 1.46749 1.33642 1.15491 1.11084 1.23192 1.06433 1.03818 0.86791 1.20964 1.02094 0.92969 0.97145 1.19969 1.04463 0.98984 0.85434 1.23012 0.97680 0.97458 1.02730 1.23000 0.94831 1.03573 0.98949 1.75105 1.15959 1.24699 0.97712 1.78545 1.14936 0.93255 1.15523 0.92474 0.92551 0.91435 0.95673 0.94719 0.78002 0.93435 0.75892 0.84754 0.84910 0.79564 0.86119 0.88046 0.88623 0.88647 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.48 37.16 0.35 -1.65 16 2 C 0.13 2.13 2.73 -67.93 -0.19 1.94 16 3 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 4 C 0.14 2.65 5.82 -4.04 -0.02 2.63 16 5 N -0.73 -17.46 5.43 -59.91 -0.33 -17.78 16 6 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 7 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 9 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 10 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 N -0.70 -9.92 4.52 -53.80 -0.24 -10.16 16 15 C 0.50 7.51 7.81 -10.98 -0.09 7.42 16 16 O -0.52 -10.06 15.34 5.56 0.09 -9.98 16 17 C 0.09 1.01 6.94 -5.19 -0.04 0.97 16 18 N -0.28 -3.82 3.20 -62.44 -0.20 -4.02 16 19 C -0.05 -0.59 10.89 -17.05 -0.19 -0.77 16 20 C 0.01 0.07 6.88 -82.78 -0.57 -0.50 16 21 C -0.07 -0.66 6.33 -91.77 -0.58 -1.24 16 22 C -0.17 -1.12 10.02 -26.73 -0.27 -1.39 16 23 C -0.17 -1.29 10.23 -26.73 -0.27 -1.57 16 24 N -0.27 -4.64 12.41 33.29 0.41 -4.23 16 25 N -0.04 -0.78 12.13 60.35 0.73 -0.05 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.39 9.86 7.33 -40.82 -0.30 9.56 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.41 5.02 8.60 -40.82 -0.35 4.67 16 34 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.13 0.77 8.07 -51.93 -0.42 0.35 16 36 H 0.19 1.23 7.45 -52.48 -0.39 0.83 16 37 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.54 7.23 -51.93 -0.38 0.16 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -36.19 353.40 -6.62 -42.80 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.00 Total: 9.27 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.10 Total: -1.28 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: 1.10 Total: -62.97 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.19 -6.62 -42.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669313241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.164 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds