Wall clock time and date at job start Fri Apr 10 2020 17:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47141 * 2 1 4 4 C 1.53005 * 109.47010 * 239.99925 * 2 1 3 5 5 N 1.46501 * 109.46976 * 185.00248 * 4 2 1 6 6 C 1.36933 * 120.00069 * 180.02562 * 5 4 2 7 7 H 1.08007 * 119.99875 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00281 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00003 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99974 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47235 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46936 * 120.00222 * 10 8 6 13 13 H 1.48507 * 109.46912 * 240.00074 * 10 8 6 14 14 N 1.46500 * 109.47072 * 120.00052 * 2 1 3 15 15 C 1.34773 * 120.00050 * 274.99595 * 14 2 1 16 16 O 1.21277 * 120.00143 * 0.02562 * 15 14 2 17 17 C 1.50705 * 120.00318 * 179.97438 * 15 14 2 18 18 N 1.46500 * 109.47383 * 180.02562 * 17 15 14 19 19 C 1.35306 * 125.86781 * 125.29463 * 18 17 15 20 20 C 1.35352 * 106.17827 * 180.18886 * 19 18 17 21 21 C 1.50697 * 126.75683 * 179.85285 * 20 19 18 22 22 C 1.53000 * 117.49504 * 16.09102 * 21 20 19 23 23 C 1.52997 * 60.00347 * 107.48912 * 22 21 20 24 24 N 1.33777 * 106.49092 * 359.59003 * 20 19 18 25 25 N 1.28628 * 108.88539 * 0.26502 * 24 20 19 26 26 H 1.08998 * 109.47461 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46862 * 300.00015 * 1 2 3 28 28 H 1.08997 * 109.47138 * 60.00043 * 1 2 3 29 29 H 1.08995 * 109.46940 * 305.00117 * 4 2 1 30 30 H 1.09002 * 109.46698 * 65.00374 * 4 2 1 31 31 H 0.97007 * 120.00216 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00161 * 180.02562 * 9 8 6 33 33 H 0.96999 * 120.00030 * 94.99764 * 14 2 1 34 34 H 1.08999 * 109.46680 * 60.00031 * 17 15 14 35 35 H 1.09002 * 109.46985 * 300.00735 * 17 15 14 36 36 H 1.08009 * 126.91407 * 0.04258 * 19 18 17 37 37 H 1.08990 * 115.56356 * 230.40274 * 21 20 19 38 38 H 1.09002 * 117.49696 * 214.98125 * 22 21 20 39 39 H 1.09002 * 117.50343 * 0.02562 * 22 21 20 40 40 H 1.08999 * 117.49685 * 252.51237 * 23 22 21 41 41 H 1.08999 * 117.52022 * 107.47599 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.1838 -1.4380 -2.2072 7 1 3.6467 -1.8432 -3.0521 8 6 5.5673 -1.5372 -2.1518 9 7 6.2218 -1.0439 -1.1220 10 14 6.5000 -2.3721 -3.5384 11 1 5.5396 -2.8386 -4.5705 12 1 7.4502 -1.4069 -4.1472 13 1 7.2518 -3.5341 -2.9998 14 7 2.0183 -0.6906 1.1962 15 6 2.1471 -0.0183 2.3571 16 8 1.8583 1.1583 2.4117 17 6 2.6488 -0.7288 3.5878 18 7 2.6977 0.2124 4.7093 19 6 2.0998 0.0450 5.9115 20 6 2.3985 1.1472 6.6381 21 6 1.9621 1.4421 8.0500 22 6 1.4253 0.2755 8.8817 23 6 2.8058 0.8604 9.1862 24 7 3.1622 1.9206 5.8582 25 7 3.3209 1.3386 4.7222 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7198 -1.2951 30 1 1.7516 -0.1583 -2.1370 31 1 3.9824 -0.4622 -0.4319 32 1 7.1885 -1.1129 -1.0835 33 1 2.2489 -1.6318 1.1526 34 1 3.6479 -1.1214 3.3986 35 1 1.9759 -1.5506 3.8326 36 1 1.5022 -0.7976 6.2270 37 1 1.5120 2.4220 8.2082 38 1 0.6218 0.4880 9.5870 39 1 1.3881 -0.7054 8.4077 40 1 3.6764 0.2645 8.9124 41 1 2.9110 1.4580 10.0917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669313241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:28 Heat of formation + Delta-G solvation = 77.031068 kcal Electronic energy + Delta-G solvation = -22902.944199 eV Core-core repulsion = 19434.569485 eV Total energy + Delta-G solvation = -3468.374714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.28704 -40.93356 -38.20537 -37.76791 -35.53938 -35.41070 -33.18144 -31.77414 -31.67803 -29.37944 -27.43267 -25.02330 -24.65841 -23.92419 -23.08638 -22.14060 -21.66108 -21.20150 -19.30310 -18.63644 -18.49643 -17.11542 -17.06438 -16.73268 -16.56612 -16.06172 -15.60018 -15.45637 -15.32142 -15.22734 -14.82659 -14.06859 -13.96468 -13.66355 -13.48859 -13.21415 -13.07717 -12.83026 -12.66600 -12.52263 -12.28207 -12.11568 -12.10434 -11.91779 -11.82339 -11.71911 -11.37970 -11.15048 -11.00570 -10.79976 -10.14306 -9.97500 -9.02487 -7.95487 -5.25168 0.59314 1.24043 1.45222 1.47585 1.49393 1.50464 1.58580 2.16280 2.55346 2.90634 3.27617 3.39246 3.53297 3.72191 3.81153 3.90566 4.00489 4.02269 4.04651 4.08126 4.28181 4.30787 4.42477 4.49224 4.77198 4.80716 4.85546 4.87629 4.92878 4.99893 5.09017 5.21579 5.24515 5.28394 5.32828 5.47625 5.51471 5.56711 6.25105 6.45428 7.12915 7.32804 7.53550 8.06190 8.29145 9.27438 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.003059 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.574070 B = 9150.701098 C =10016.475539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.142 3.858 3 H 0.051 0.949 4 C 0.146 3.854 5 N -0.745 5.745 6 C -0.241 4.241 7 H 0.081 0.919 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.264 1.264 12 H -0.301 1.301 13 H -0.292 1.292 14 N -0.696 5.696 15 C 0.500 3.500 16 O -0.570 6.570 17 C 0.095 3.905 18 N -0.277 5.277 19 C -0.031 4.031 20 C -0.010 4.010 21 C -0.096 4.096 22 C -0.141 4.141 23 C -0.169 4.169 24 N -0.312 5.312 25 N -0.109 5.109 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.374 0.626 32 H 0.249 0.751 33 H 0.417 0.583 34 H 0.144 0.856 35 H 0.195 0.805 36 H 0.241 0.759 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.072 -6.025 17.931 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.037 3.963 3 H 0.070 0.930 4 C 0.019 3.981 5 N -0.388 5.388 6 C -0.373 4.373 7 H 0.098 0.902 8 C -0.267 4.267 9 N -0.619 5.619 10 Si 0.801 3.199 11 H -0.188 1.188 12 H -0.228 1.228 13 H -0.219 1.219 14 N -0.348 5.348 15 C 0.284 3.716 16 O -0.448 6.448 17 C -0.029 4.029 18 N -0.071 5.071 19 C -0.182 4.182 20 C -0.148 4.148 21 C -0.117 4.117 22 C -0.178 4.178 23 C -0.206 4.206 24 N -0.178 5.178 25 N -0.087 5.087 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.206 0.794 32 H 0.058 0.942 33 H 0.254 0.746 34 H 0.161 0.839 35 H 0.212 0.788 36 H 0.257 0.743 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.390 -4.318 16.899 22.612 hybrid contribution 0.797 -0.811 -0.390 1.201 sum -13.594 -5.128 16.509 21.992 Atomic orbital electron populations 1.21985 0.92403 1.03488 1.02423 1.21082 0.95438 0.95897 0.83875 0.93021 1.21147 0.83974 0.98300 0.94687 1.42565 1.01909 1.69956 1.24357 1.19661 0.89794 1.28129 0.99700 0.90156 1.25549 0.97609 1.03082 1.00445 1.69830 1.06963 1.52829 1.32261 0.85101 0.78505 0.77282 0.78995 1.18783 1.22845 1.21925 1.45763 1.65941 1.14812 1.08333 1.20756 0.77913 0.87190 0.85700 1.90795 1.51208 1.17404 1.85411 1.22279 1.08734 0.90371 0.81505 1.46997 1.32932 1.14769 1.12367 1.24012 1.04721 1.04296 0.85124 1.21653 1.01539 0.93188 0.98452 1.20065 1.06804 1.00440 0.84343 1.23178 0.96977 0.96647 1.01029 1.23057 0.95486 1.03669 0.98434 1.75011 1.17733 1.26511 0.98519 1.78477 1.18032 0.95697 1.16529 0.90037 0.93261 0.90499 0.93322 0.94728 0.79424 0.94181 0.74608 0.83868 0.78783 0.74284 0.86662 0.86043 0.86924 0.89598 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.48 71.98 0.68 -2.71 16 2 C 0.14 4.40 2.73 44.99 0.12 4.52 16 3 H 0.05 2.00 7.58 -2.39 -0.02 1.98 16 4 C 0.15 5.15 5.82 86.38 0.50 5.65 16 5 N -0.74 -35.29 5.43 -343.44 -1.87 -37.16 16 6 C -0.24 -12.74 9.99 84.03 0.84 -11.90 16 7 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 8 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 9 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16 10 Si 0.97 44.89 29.55 68.60 2.03 46.92 16 11 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 13 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 14 N -0.70 -18.89 4.52 -442.53 -2.00 -20.89 16 15 C 0.50 14.68 7.81 87.66 0.68 15.36 16 16 O -0.57 -22.91 15.34 -3.02 -0.05 -22.96 16 17 C 0.09 1.86 6.94 85.63 0.59 2.45 16 18 N -0.28 -7.42 3.20 -351.46 -1.12 -8.54 16 19 C -0.03 -0.62 10.89 83.49 0.91 0.29 16 20 C -0.01 -0.25 6.88 41.59 0.29 0.03 16 21 C -0.10 -1.76 6.33 -11.54 -0.07 -1.83 16 22 C -0.14 -1.37 10.02 30.59 0.31 -1.07 16 23 C -0.17 -2.37 10.23 30.60 0.31 -2.06 16 24 N -0.31 -11.33 12.41 -48.60 -0.60 -11.94 16 25 N -0.11 -4.11 12.13 37.02 0.45 -3.66 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.37 19.41 7.33 -92.70 -0.68 18.73 16 32 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.42 9.45 8.60 -92.71 -0.80 8.66 16 34 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.20 1.27 8.07 -2.39 -0.02 1.25 16 36 H 0.24 1.84 7.45 -2.91 -0.02 1.82 16 37 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.11 0.72 7.23 -2.39 -0.02 0.70 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -84.04 353.40 2.34 -81.71 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.42 Total: 29.33 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.64 Total: 5.07 kcal Atomic # 7 Polarization: -135.21 SS G_CDS: -4.86 Total: -140.07 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -84.04 2.34 -81.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669313241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.738 kcal (2) G-P(sol) polarization free energy of solvation -84.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds