Wall clock time and date at job start Fri Apr 10 2020 17:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99974 * 2 1 4 4 H 1.07998 * 119.99980 * 192.51078 * 3 2 1 5 5 C 1.38811 * 119.99952 * 12.51687 * 3 2 1 6 6 N 1.31621 * 120.00240 * 15.10237 * 5 3 2 7 7 Si 1.86806 * 119.99817 * 195.10435 * 5 3 2 8 8 H 1.48502 * 109.47064 * 359.97438 * 7 5 3 9 9 H 1.48490 * 109.47399 * 119.99801 * 7 5 3 10 10 H 1.48504 * 109.46889 * 240.00008 * 7 5 3 11 11 C 1.46497 * 119.99853 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47196 * 85.97410 * 11 2 1 13 13 H 1.09011 * 109.99775 * 306.65316 * 12 11 2 14 14 C 1.54315 * 109.77694 * 67.80953 * 12 11 2 15 15 C 1.55153 * 102.86450 * 141.88673 * 14 12 11 16 16 C 1.54907 * 101.58223 * 324.30734 * 15 14 12 17 17 N 1.47020 * 109.88551 * 185.56245 * 12 11 2 18 18 C 1.34779 * 125.64970 * 61.67219 * 17 12 11 19 19 O 1.21277 * 119.99919 * 355.31159 * 18 17 12 20 20 C 1.50697 * 120.00004 * 175.31637 * 18 17 12 21 21 N 1.46500 * 109.47277 * 180.02562 * 20 18 17 22 22 C 1.34426 * 126.82741 * 124.99781 * 21 20 18 23 23 N 1.30822 * 108.08070 * 180.20646 * 22 21 20 24 24 C 1.33250 * 109.82753 * 359.60121 * 23 22 21 25 25 N 1.30703 * 108.94468 * 0.40318 * 24 23 22 26 26 H 1.08995 * 109.47157 * 174.67722 * 1 2 3 27 27 H 1.08998 * 109.47202 * 294.67796 * 1 2 3 28 28 H 1.09001 * 109.46785 * 54.67735 * 1 2 3 29 29 H 0.97000 * 119.99759 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.47241 * 325.97486 * 11 2 1 31 31 H 1.08997 * 109.47274 * 205.97105 * 11 2 1 32 32 H 1.08992 * 110.92304 * 23.47037 * 14 12 11 33 33 H 1.09007 * 110.58779 * 260.14967 * 14 12 11 34 34 H 1.08996 * 111.00741 * 206.23034 * 15 14 12 35 35 H 1.09009 * 111.00317 * 82.37950 * 15 14 12 36 36 H 1.09007 * 110.36424 * 278.16949 * 16 15 14 37 37 H 1.09000 * 110.37327 * 155.85128 * 16 15 14 38 38 H 1.08997 * 109.47517 * 59.99672 * 20 18 17 39 39 H 1.09004 * 109.47095 * 299.99692 * 20 18 17 40 40 H 1.08004 * 125.95608 * 359.94164 * 22 21 20 41 41 H 1.08004 * 125.52337 * 180.13072 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2105 1.1970 -0.2026 5 6 1.4804 2.3737 0.2605 6 7 0.2771 2.3480 0.7932 7 14 2.2875 4.0089 -0.1450 8 1 3.6304 3.7663 -0.7307 9 1 1.4470 4.7471 -1.1215 10 1 2.4270 4.8131 1.0956 11 6 2.1975 -1.2687 -0.0006 12 6 2.3648 -1.7604 -1.4397 13 1 1.3949 -1.7979 -1.9360 14 6 3.3138 -0.8161 -2.2071 15 6 4.1310 -1.7929 -3.0932 16 6 4.2673 -3.0207 -2.1586 17 7 2.9802 -3.0956 -1.4436 18 6 2.4524 -4.2055 -0.8903 19 8 1.4214 -4.1351 -0.2557 20 6 3.1436 -5.5338 -1.0601 21 7 2.3770 -6.5748 -0.3710 22 6 1.9072 -7.7158 -0.9043 23 7 1.2740 -8.3719 0.0337 24 6 1.3252 -7.6886 1.1766 25 7 1.9875 -6.5793 0.9784 26 1 -0.3633 -1.0232 -0.0953 27 1 -0.3633 0.4291 0.9338 28 1 -0.3633 0.5942 -0.8385 29 1 -0.1907 3.1781 0.9749 30 1 1.6415 -2.0095 0.5741 31 1 3.1792 -1.1217 0.4495 32 1 3.9680 -0.2793 -1.5202 33 1 2.7455 -0.1196 -2.8237 34 1 5.1084 -1.3760 -3.3356 35 1 3.5823 -2.0506 -3.9992 36 1 5.0850 -2.8716 -1.4532 37 1 4.4299 -3.9263 -2.7430 38 1 4.1458 -5.4789 -0.6353 39 1 3.2113 -5.7751 -2.1209 40 1 2.0277 -8.0333 -1.9296 41 1 0.8866 -7.9989 2.1135 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674496097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:46 Heat of formation + Delta-G solvation = 77.522260 kcal Electronic energy + Delta-G solvation = -23967.806630 eV Core-core repulsion = 20499.453216 eV Total energy + Delta-G solvation = -3468.353414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.98311 -41.17914 -38.74740 -37.17750 -35.01626 -33.52769 -32.64028 -32.13568 -30.74822 -28.84480 -28.01432 -26.80407 -24.50567 -23.12642 -22.87486 -22.81914 -21.61967 -20.01888 -18.90708 -18.43588 -18.03735 -17.43182 -16.70349 -16.54288 -16.29060 -15.69811 -15.54379 -15.34589 -15.05080 -14.92897 -14.59374 -14.21742 -13.90422 -13.79391 -13.57056 -13.46899 -12.94375 -12.79173 -12.72424 -12.64017 -12.33414 -12.07076 -11.97407 -11.88190 -11.59530 -11.48899 -11.23022 -10.99450 -10.76133 -10.74772 -10.47665 -9.74824 -8.87947 -7.72684 -5.26184 0.70515 1.32807 1.46838 1.47733 1.53819 1.58583 1.97169 2.07333 2.52349 3.28264 3.35359 3.54745 3.63146 3.68452 3.83100 3.90392 4.05477 4.08530 4.13361 4.34914 4.42299 4.47376 4.51561 4.70113 4.73244 4.87902 4.97317 5.10368 5.12937 5.20384 5.24733 5.26670 5.42880 5.46428 5.50328 5.64922 5.71949 5.91785 6.28764 6.56052 7.10034 7.12538 7.16242 7.83524 8.28420 9.23580 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.003866 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.501709 B = 7241.509672 C = 8127.493859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.615 5.615 3 C -0.246 4.246 4 H 0.087 0.913 5 C -0.067 4.067 6 N -0.947 5.947 7 Si 0.973 3.027 8 H -0.257 1.257 9 H -0.294 1.294 10 H -0.297 1.297 11 C 0.153 3.847 12 C 0.129 3.871 13 H 0.037 0.963 14 C -0.110 4.110 15 C -0.122 4.122 16 C 0.092 3.908 17 N -0.610 5.610 18 C 0.500 3.500 19 O -0.572 6.572 20 C 0.122 3.878 21 N -0.378 5.378 22 C 0.265 3.735 23 N -0.576 5.576 24 C 0.183 3.817 25 N -0.341 5.341 26 H 0.007 0.993 27 H 0.038 0.962 28 H -0.001 1.001 29 H 0.244 0.756 30 H 0.021 0.979 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.143 0.857 39 H 0.187 0.813 40 H 0.272 0.728 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.151 -18.596 -12.139 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.338 5.338 3 C -0.376 4.376 4 H 0.105 0.895 5 C -0.261 4.261 6 N -0.596 5.596 7 Si 0.802 3.198 8 H -0.181 1.181 9 H -0.221 1.221 10 H -0.225 1.225 11 C 0.025 3.975 12 C 0.023 3.977 13 H 0.056 0.944 14 C -0.148 4.148 15 C -0.160 4.160 16 C -0.029 4.029 17 N -0.344 5.344 18 C 0.288 3.712 19 O -0.450 6.450 20 C -0.002 4.002 21 N -0.169 5.169 22 C -0.030 4.030 23 N -0.304 5.304 24 C -0.120 4.120 25 N -0.168 5.168 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.017 0.983 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.143 0.857 38 H 0.161 0.839 39 H 0.204 0.796 40 H 0.287 0.713 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 12.513 -18.226 -11.242 24.802 hybrid contribution -0.592 1.476 0.301 1.619 sum 11.920 -16.750 -10.941 23.289 Atomic orbital electron populations 1.20716 0.83134 0.93596 0.99647 1.44134 1.01905 1.01659 1.86127 1.19682 0.93739 0.84388 1.39755 0.89544 1.25764 0.97769 1.01565 1.00967 1.70316 1.15566 1.25620 1.48115 0.85093 0.78318 0.79541 0.76890 1.18072 1.22118 1.22480 1.21040 0.95101 0.86499 0.94819 1.22092 0.96016 0.82037 0.97542 0.94448 1.22454 0.97346 0.96761 0.98234 1.22835 1.01676 0.94106 0.97362 1.22782 0.83850 1.01240 0.95016 1.48726 1.22990 1.07239 1.55484 1.21009 0.85164 0.86165 0.78846 1.90812 1.26730 1.86311 1.41142 1.21944 0.94989 0.81643 1.01667 1.50161 1.42290 1.17365 1.07097 1.27071 0.91018 0.83044 1.01892 1.70515 1.25203 1.34239 1.00467 1.26448 0.97550 0.88662 0.99292 1.78159 1.20912 1.22149 0.95554 0.97412 0.94390 0.98263 0.94611 0.96063 0.93765 0.91513 0.91870 0.87346 0.89775 0.89863 0.85749 0.83897 0.79575 0.71276 0.75202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 9.78 9.07 127.77 1.16 10.94 16 2 N -0.61 -32.92 2.85 -726.95 -2.07 -34.99 16 3 C -0.25 -13.53 8.98 84.03 0.75 -12.77 16 4 H 0.09 4.42 6.89 -2.91 -0.02 4.40 16 5 C -0.07 -3.85 5.27 84.86 0.45 -3.40 16 6 N -0.95 -58.35 10.15 21.65 0.22 -58.13 16 7 Si 0.97 45.23 29.58 68.60 2.03 47.26 16 8 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 10 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 11 C 0.15 6.91 5.08 86.38 0.44 7.35 16 12 C 0.13 4.54 3.14 45.34 0.14 4.68 16 13 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 14 C -0.11 -3.18 5.70 31.78 0.18 -3.00 16 15 C -0.12 -1.91 7.08 31.98 0.23 -1.68 16 16 C 0.09 1.20 6.73 86.85 0.58 1.78 16 17 N -0.61 -15.35 3.07 -788.07 -2.42 -17.77 16 18 C 0.50 13.77 7.70 87.66 0.68 14.45 16 19 O -0.57 -23.61 14.54 -3.02 -0.04 -23.65 16 20 C 0.12 1.71 5.97 85.63 0.51 2.23 16 21 N -0.38 -8.14 3.41 -355.81 -1.21 -9.35 16 22 C 0.27 4.47 12.63 180.36 2.28 6.75 16 23 N -0.58 -13.78 11.19 -204.00 -2.28 -16.06 16 24 C 0.18 4.79 13.03 180.77 2.36 7.15 16 25 N -0.34 -10.35 11.82 -61.24 -0.72 -11.07 16 26 H 0.01 0.39 7.89 -2.39 -0.02 0.37 16 27 H 0.04 2.36 6.34 -2.39 -0.02 2.34 16 28 H 0.00 -0.07 7.96 -2.39 -0.02 -0.09 16 29 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.02 1.08 6.46 -2.39 -0.02 1.06 16 31 H 0.04 1.96 7.87 -2.39 -0.02 1.94 16 32 H 0.07 2.12 6.70 -2.39 -0.02 2.11 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.12 0.38 7.47 -2.39 -0.02 0.36 16 38 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.19 0.32 7.88 -2.38 -0.02 0.30 16 40 H 0.27 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.23 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -89.83 337.06 4.28 -85.55 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 1.03 Total: 3.75 kcal Atomic # 6 Polarization: 24.71 SS G_CDS: 9.75 Total: 34.47 kcal Atomic # 7 Polarization: -138.89 SS G_CDS: -8.48 Total: -147.37 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.04 Total: -23.65 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -89.83 4.28 -85.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674496097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.070 kcal (2) G-P(sol) polarization free energy of solvation -89.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds