Wall clock time and date at job start Fri Apr 10 2020 17:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34819 * 126.59434 * 2 1 4 4 C 1.36601 * 106.83852 * 180.02562 * 3 2 1 5 5 C 1.47516 * 125.76820 * 179.97438 * 4 3 2 6 6 O 1.21599 * 120.00361 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00246 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00200 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.01646 * 326.39023 * 8 7 5 10 10 C 1.53882 * 110.03135 * 87.83540 * 8 7 5 11 11 C 1.54267 * 106.59905 * 119.28141 * 10 8 7 12 12 C 1.54889 * 104.19467 * 23.60979 * 11 10 8 13 13 H 1.08999 * 110.91491 * 80.44193 * 12 11 10 14 14 C 1.53001 * 110.75493 * 203.73936 * 12 11 10 15 15 N 1.46490 * 109.47264 * 288.32759 * 14 12 11 16 16 C 1.36935 * 120.00121 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.54271 * 110.02980 * 204.99914 * 8 7 5 25 25 N 1.34400 * 108.45992 * 0.24880 * 4 3 2 26 26 N 1.28765 * 109.52007 * 359.58451 * 25 4 3 27 27 H 1.09000 * 109.46920 * 89.99934 * 1 2 3 28 28 H 1.08997 * 109.47311 * 209.99583 * 1 2 3 29 29 H 1.09003 * 109.47131 * 329.99805 * 1 2 3 30 30 H 1.07994 * 126.58116 * 0.05809 * 3 2 1 31 31 H 0.97002 * 119.99691 * 0.02562 * 7 5 4 32 32 H 1.09004 * 110.02606 * 238.56604 * 10 8 7 33 33 H 1.09002 * 110.03061 * 359.94537 * 10 8 7 34 34 H 1.08991 * 110.48623 * 264.93368 * 11 10 8 35 35 H 1.09000 * 110.48373 * 142.28652 * 11 10 8 36 36 H 1.09003 * 109.46836 * 168.32466 * 14 12 11 37 37 H 1.08999 * 109.47071 * 48.33505 * 14 12 11 38 38 H 0.97000 * 120.00577 * 0.02562 * 15 14 12 39 39 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 40 40 H 1.08998 * 110.48457 * 98.42929 * 24 8 7 41 41 H 1.08995 * 110.59975 * 335.83933 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 -0.0006 5 6 4.7703 1.4557 -0.0013 6 8 4.6755 2.6680 -0.0010 7 7 5.9867 0.8750 -0.0024 8 6 7.1943 1.7043 -0.0026 9 1 7.0187 2.6190 -0.5688 10 6 7.5988 2.0468 1.4421 11 6 9.0092 1.4596 1.6559 12 6 9.5977 1.3551 0.2270 13 1 9.9757 2.3205 -0.1097 14 6 10.6988 0.2943 0.1703 15 7 11.8855 0.7840 0.8759 16 6 13.0055 0.0004 0.9576 17 1 13.0141 -0.9784 0.5015 18 6 14.1299 0.4642 1.6266 19 7 14.1192 1.6571 2.1830 20 14 15.6580 -0.6045 1.7374 21 1 16.7109 0.1147 2.4986 22 1 15.3249 -1.8737 2.4327 23 1 16.1527 -0.9042 0.3698 24 6 8.3732 0.9209 -0.6162 25 7 3.5239 -0.7229 -0.0065 26 7 2.3008 -1.1257 -0.0008 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 1.9561 2.1161 0.0009 31 1 6.0624 -0.0920 -0.0030 32 1 7.6200 3.1282 1.5774 33 1 6.8959 1.5968 2.1433 34 1 8.9461 0.4733 2.1155 35 1 9.6123 2.1294 2.2689 36 1 10.9530 0.0898 -0.8698 37 1 10.3459 -0.6213 0.6448 38 1 11.8777 1.6631 1.2859 39 1 13.3258 2.2121 2.1251 40 1 8.5121 1.1975 -1.6613 41 1 8.2088 -0.1528 -0.5253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676925707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:13 Heat of formation + Delta-G solvation = 63.010435 kcal Electronic energy + Delta-G solvation = -22566.696214 eV Core-core repulsion = 19097.713520 eV Total energy + Delta-G solvation = -3468.982694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.56816 -39.86271 -37.96538 -35.16690 -34.94031 -33.48456 -31.48570 -30.89054 -28.71337 -28.55288 -27.42110 -24.38322 -23.61823 -22.63045 -22.35543 -20.99314 -20.32673 -19.47114 -18.40963 -17.16327 -16.69556 -16.52782 -16.39617 -15.57934 -14.98275 -14.92357 -14.74017 -14.22338 -13.72085 -13.68093 -13.65956 -13.37849 -13.20541 -13.02790 -12.52960 -12.18461 -11.73173 -11.68249 -11.55196 -10.88079 -10.83119 -10.73660 -10.59065 -10.47450 -10.28019 -10.25255 -10.18592 -9.92570 -9.70496 -9.12396 -9.07747 -8.81197 -6.92785 -6.04506 -3.03148 0.72895 1.38886 1.60225 2.97927 3.07722 3.55434 3.59414 3.76748 3.85707 3.90215 4.36108 4.40198 4.56277 4.67199 4.69576 4.73947 4.79469 4.94885 5.05949 5.36592 5.46294 5.58395 5.63884 5.66479 5.71205 5.83606 5.87098 5.92314 6.04770 6.13779 6.16147 6.30032 6.44379 6.55345 6.57597 6.79237 6.91918 7.29353 7.60012 7.86889 8.02215 8.82280 9.30637 10.16974 10.32544 11.44359 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.041131 B = 0.002370 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.590349 B =11813.010482 C =12173.164448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.365 5.365 3 C 0.093 3.907 4 C -0.101 4.101 5 C 0.604 3.396 6 O -0.541 6.541 7 N -0.705 5.705 8 C 0.141 3.859 9 H 0.093 0.907 10 C -0.133 4.133 11 C -0.112 4.112 12 C -0.097 4.097 13 H 0.078 0.922 14 C 0.167 3.833 15 N -0.743 5.743 16 C -0.329 4.329 17 H 0.063 0.937 18 C -0.048 4.048 19 N -0.945 5.945 20 Si 1.080 2.920 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.296 1.296 24 C -0.121 4.121 25 N -0.203 5.203 26 N -0.065 5.065 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.206 0.794 31 H 0.408 0.592 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.018 0.982 37 H 0.020 0.980 38 H 0.367 0.633 39 H 0.254 0.746 40 H 0.072 0.928 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.289 -0.875 -5.329 30.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.150 5.150 3 C -0.064 4.064 4 C -0.240 4.240 5 C 0.387 3.613 6 O -0.417 6.417 7 N -0.355 5.355 8 C 0.037 3.963 9 H 0.111 0.889 10 C -0.172 4.172 11 C -0.150 4.150 12 C -0.116 4.116 13 H 0.096 0.904 14 C 0.039 3.961 15 N -0.389 5.389 16 C -0.460 4.460 17 H 0.081 0.919 18 C -0.245 4.245 19 N -0.591 5.591 20 Si 0.911 3.089 21 H -0.211 1.211 22 H -0.223 1.223 23 H -0.223 1.223 24 C -0.160 4.160 25 N -0.077 5.077 26 N -0.046 5.046 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.222 0.778 31 H 0.244 0.756 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.200 0.800 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.780 -1.843 -4.851 29.245 hybrid contribution -1.922 0.854 -0.495 2.161 sum -30.703 -0.988 -5.346 31.180 Atomic orbital electron populations 1.22218 0.72403 1.05903 1.04877 1.50399 1.09221 1.05712 1.49645 1.23397 0.90153 0.95046 0.97821 1.21548 0.94730 0.90428 1.17329 1.16761 0.81872 0.86317 0.76306 1.90812 1.86682 1.13041 1.51187 1.46037 1.04935 1.11032 1.73528 1.21775 0.82936 0.94433 0.97111 0.88917 1.22594 0.97603 1.01349 0.95643 1.22352 0.94230 1.01327 0.97082 1.22286 0.94417 1.00188 0.94731 0.90395 1.20573 0.86320 0.93942 0.95230 1.42352 1.11384 1.19030 1.66092 1.20040 0.93083 0.99576 1.33339 0.91861 1.25775 1.01063 0.99656 0.98031 1.70879 1.31092 1.09920 1.47232 0.83235 0.75630 0.74195 0.75798 1.21070 1.22324 1.22319 1.22628 0.93492 1.00249 0.99602 1.74647 1.12940 1.10289 1.09829 1.82030 0.93450 1.06402 1.22698 0.89111 0.87982 0.88294 0.77751 0.75620 0.91235 0.91642 0.91429 0.91325 0.96384 0.96213 0.80001 0.93432 0.90889 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.14 11.51 59.84 0.69 0.83 16 2 N -0.36 -2.53 4.03 -67.86 -0.27 -2.80 16 3 C 0.09 0.71 11.31 -16.83 -0.19 0.52 16 4 C -0.10 -1.10 6.99 -83.55 -0.58 -1.68 16 5 C 0.60 7.57 7.81 -12.48 -0.10 7.47 16 6 O -0.54 -8.00 16.52 5.28 0.09 -7.92 16 7 N -0.71 -8.33 4.98 -53.76 -0.27 -8.60 16 8 C 0.14 1.78 3.25 -66.81 -0.22 1.56 16 9 H 0.09 1.23 7.56 -51.93 -0.39 0.83 16 10 C -0.13 -1.78 6.59 -25.61 -0.17 -1.95 16 11 C -0.11 -1.74 6.20 -25.07 -0.16 -1.90 16 12 C -0.10 -1.56 2.91 -88.62 -0.26 -1.82 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.17 3.43 5.70 -4.05 -0.02 3.41 16 15 N -0.74 -19.19 5.52 -59.91 -0.33 -19.52 16 16 C -0.33 -9.56 9.99 -15.06 -0.15 -9.71 16 17 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.05 -1.43 5.50 -17.43 -0.10 -1.53 16 19 N -0.95 -29.83 13.70 55.49 0.76 -29.07 16 20 Si 1.08 26.48 29.92 -169.99 -5.09 21.40 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.30 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.12 -1.56 5.97 -25.07 -0.15 -1.71 16 25 N -0.20 -2.40 12.04 32.85 0.40 -2.00 16 26 N -0.07 -0.69 13.78 60.35 0.83 0.14 16 27 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 28 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.21 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.41 4.42 8.05 -40.82 -0.33 4.09 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.87 7.92 -51.93 -0.41 0.46 16 34 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.02 0.42 7.99 -51.93 -0.41 0.00 16 38 H 0.37 9.64 6.50 -40.82 -0.27 9.37 16 39 H 0.25 7.90 6.77 -40.82 -0.28 7.62 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.92 7.65 -51.93 -0.40 0.52 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -36.64 346.94 -5.97 -42.60 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.91 Total: 7.05 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -1.40 Total: -6.51 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 1.12 Total: -61.85 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.09 Total: 21.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.64 -5.97 -42.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676925707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.612 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds