Wall clock time and date at job start Fri Apr 10 2020 17:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34819 * 126.59434 * 2 1 4 4 C 1.36601 * 106.83852 * 180.02562 * 3 2 1 5 5 C 1.47516 * 125.76820 * 179.97438 * 4 3 2 6 6 O 1.21599 * 120.00361 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00246 * 180.02562 * 5 4 3 8 8 C 1.46497 * 120.00200 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.01646 * 326.39023 * 8 7 5 10 10 C 1.53882 * 110.03135 * 87.83540 * 8 7 5 11 11 C 1.54267 * 106.59905 * 119.28141 * 10 8 7 12 12 C 1.54889 * 104.19467 * 23.60979 * 11 10 8 13 13 H 1.08999 * 110.91491 * 80.44193 * 12 11 10 14 14 C 1.53001 * 110.75493 * 203.73936 * 12 11 10 15 15 N 1.46490 * 109.47264 * 288.32759 * 14 12 11 16 16 C 1.36935 * 120.00121 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.54271 * 110.02980 * 204.99914 * 8 7 5 25 25 N 1.34400 * 108.45992 * 0.24880 * 4 3 2 26 26 N 1.28765 * 109.52007 * 359.58451 * 25 4 3 27 27 H 1.09000 * 109.46920 * 89.99934 * 1 2 3 28 28 H 1.08997 * 109.47311 * 209.99583 * 1 2 3 29 29 H 1.09003 * 109.47131 * 329.99805 * 1 2 3 30 30 H 1.07994 * 126.58116 * 0.05809 * 3 2 1 31 31 H 0.97002 * 119.99691 * 0.02562 * 7 5 4 32 32 H 1.09004 * 110.02606 * 238.56604 * 10 8 7 33 33 H 1.09002 * 110.03061 * 359.94537 * 10 8 7 34 34 H 1.08991 * 110.48623 * 264.93368 * 11 10 8 35 35 H 1.09000 * 110.48373 * 142.28652 * 11 10 8 36 36 H 1.09003 * 109.46836 * 168.32466 * 14 12 11 37 37 H 1.08999 * 109.47071 * 48.33505 * 14 12 11 38 38 H 0.97000 * 120.00577 * 0.02562 * 15 14 12 39 39 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 40 40 H 1.08998 * 110.48457 * 98.42929 * 24 8 7 41 41 H 1.08995 * 110.59975 * 335.83933 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0824 0.0000 4 6 3.5543 0.6207 -0.0006 5 6 4.7703 1.4557 -0.0013 6 8 4.6755 2.6680 -0.0010 7 7 5.9867 0.8750 -0.0024 8 6 7.1943 1.7043 -0.0026 9 1 7.0187 2.6190 -0.5688 10 6 7.5988 2.0468 1.4421 11 6 9.0092 1.4596 1.6559 12 6 9.5977 1.3551 0.2270 13 1 9.9757 2.3205 -0.1097 14 6 10.6988 0.2943 0.1703 15 7 11.8855 0.7840 0.8759 16 6 13.0055 0.0004 0.9576 17 1 13.0141 -0.9784 0.5015 18 6 14.1299 0.4642 1.6266 19 7 14.1192 1.6571 2.1830 20 14 15.6580 -0.6045 1.7374 21 1 16.7109 0.1147 2.4986 22 1 15.3249 -1.8737 2.4327 23 1 16.1527 -0.9042 0.3698 24 6 8.3732 0.9209 -0.6162 25 7 3.5239 -0.7229 -0.0065 26 7 2.3008 -1.1257 -0.0008 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 1.9561 2.1161 0.0009 31 1 6.0624 -0.0920 -0.0030 32 1 7.6200 3.1282 1.5774 33 1 6.8959 1.5968 2.1433 34 1 8.9461 0.4733 2.1155 35 1 9.6123 2.1294 2.2689 36 1 10.9530 0.0898 -0.8698 37 1 10.3459 -0.6213 0.6448 38 1 11.8777 1.6631 1.2859 39 1 13.3258 2.2121 2.1251 40 1 8.5121 1.1975 -1.6613 41 1 8.2088 -0.1528 -0.5253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676925707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:11 Heat of formation + Delta-G solvation = 35.573589 kcal Electronic energy + Delta-G solvation = -22567.885965 eV Core-core repulsion = 19097.713520 eV Total energy + Delta-G solvation = -3470.172445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.23414 -40.88524 -39.17495 -36.75856 -35.68156 -34.81925 -32.92698 -32.00048 -30.07121 -29.32802 -28.38089 -26.07715 -24.68530 -24.15468 -23.20519 -21.88841 -21.46913 -20.71004 -19.37732 -19.09124 -17.61098 -17.24608 -17.16405 -16.74125 -16.55427 -15.76760 -15.66694 -15.57294 -15.27517 -15.04859 -14.85456 -14.29358 -14.11963 -13.95807 -13.63444 -13.15589 -12.96549 -12.81018 -12.67120 -12.57383 -12.29209 -12.07597 -11.87145 -11.80645 -11.70141 -11.52280 -11.34829 -11.25582 -11.17913 -10.89902 -10.45504 -10.06688 -9.08932 -8.39428 -5.32385 0.13454 0.57000 1.16411 1.58776 1.69288 1.85710 2.08231 2.19562 2.72575 3.15836 3.39886 3.44524 3.51719 3.56446 3.81362 3.89236 3.95512 4.01366 4.34070 4.37165 4.43783 4.44927 4.50246 4.54154 4.57939 4.68125 4.69073 4.76576 4.85639 4.95509 5.06892 5.09336 5.13863 5.28633 5.43273 5.44959 5.53390 5.59596 6.38799 6.50495 6.86473 7.09872 7.11334 8.02388 8.13285 9.12821 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.041131 B = 0.002370 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.590349 B =11813.010482 C =12173.164448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.351 5.351 3 C 0.110 3.890 4 C -0.128 4.128 5 C 0.605 3.395 6 O -0.567 6.567 7 N -0.701 5.701 8 C 0.150 3.850 9 H 0.091 0.909 10 C -0.124 4.124 11 C -0.108 4.108 12 C -0.091 4.091 13 H 0.072 0.928 14 C 0.165 3.835 15 N -0.756 5.756 16 C -0.335 4.335 17 H 0.065 0.935 18 C -0.108 4.108 19 N -0.975 5.975 20 Si 1.130 2.870 21 H -0.292 1.292 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.109 4.109 25 N -0.227 5.227 26 N -0.094 5.094 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.130 0.870 30 H 0.239 0.761 31 H 0.413 0.587 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.361 0.639 39 H 0.244 0.756 40 H 0.086 0.914 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.346 -1.342 -6.055 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.135 5.135 3 C -0.048 4.048 4 C -0.269 4.269 5 C 0.391 3.609 6 O -0.446 6.446 7 N -0.352 5.352 8 C 0.045 3.955 9 H 0.109 0.891 10 C -0.162 4.162 11 C -0.146 4.146 12 C -0.110 4.110 13 H 0.091 0.909 14 C 0.039 3.961 15 N -0.401 5.401 16 C -0.467 4.467 17 H 0.084 0.916 18 C -0.298 4.298 19 N -0.623 5.623 20 Si 0.954 3.046 21 H -0.218 1.218 22 H -0.204 1.204 23 H -0.203 1.203 24 C -0.147 4.147 25 N -0.100 5.100 26 N -0.075 5.075 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.149 0.851 30 H 0.255 0.745 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.193 0.807 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -30.912 -2.366 -5.607 31.505 hybrid contribution -1.448 0.997 -0.290 1.782 sum -32.360 -1.369 -5.897 32.921 Atomic orbital electron populations 1.22741 0.69257 1.07837 1.06666 1.50747 1.10781 1.04561 1.47456 1.23880 0.89090 0.96363 0.95498 1.21511 0.95281 0.90346 1.19738 1.16955 0.82350 0.86141 0.75480 1.90791 1.87107 1.14086 1.52579 1.45969 1.04658 1.11197 1.73333 1.21588 0.83177 0.94433 0.96267 0.89066 1.22500 0.96008 1.01314 0.96401 1.22265 0.95357 1.00613 0.96371 1.22153 0.94305 0.98554 0.95964 0.90928 1.20733 0.85886 0.95175 0.94287 1.42578 1.12304 1.18642 1.66557 1.20414 0.94097 0.99838 1.32318 0.91650 1.27272 1.04425 1.00163 0.97986 1.70991 1.30911 1.11123 1.49291 0.82610 0.72099 0.73187 0.76712 1.21837 1.20390 1.20306 1.22533 0.91708 1.00833 0.99675 1.74607 1.13869 1.10889 1.10668 1.81934 0.93619 1.08051 1.23911 0.87309 0.87358 0.85140 0.74510 0.75016 0.91023 0.91407 0.92208 0.93108 0.96344 0.96262 0.80705 0.94612 0.89499 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.00 11.51 127.77 1.47 1.47 16 2 N -0.35 -4.05 4.03 -368.60 -1.49 -5.54 16 3 C 0.11 1.42 11.31 83.85 0.95 2.37 16 4 C -0.13 -2.65 6.99 40.82 0.29 -2.37 16 5 C 0.61 14.59 7.81 86.69 0.68 15.27 16 6 O -0.57 -16.15 16.52 -4.03 -0.07 -16.22 16 7 N -0.70 -15.88 4.98 -442.25 -2.20 -18.08 16 8 C 0.15 3.61 3.25 45.72 0.15 3.75 16 9 H 0.09 2.30 7.56 -2.39 -0.02 2.28 16 10 C -0.12 -3.23 6.59 31.32 0.21 -3.03 16 11 C -0.11 -3.38 6.20 31.67 0.20 -3.18 16 12 C -0.09 -2.90 2.91 -9.50 -0.03 -2.92 16 13 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.17 6.79 5.70 86.38 0.49 7.28 16 15 N -0.76 -39.58 5.52 -343.47 -1.90 -41.48 16 16 C -0.34 -19.53 9.99 84.03 0.84 -18.69 16 17 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 18 C -0.11 -6.42 5.50 84.86 0.47 -5.96 16 19 N -0.97 -62.53 13.70 21.65 0.30 -62.23 16 20 Si 1.13 53.12 29.92 68.60 2.05 55.17 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 C -0.11 -2.66 5.97 31.67 0.19 -2.47 16 25 N -0.23 -5.23 12.04 -50.00 -0.60 -5.83 16 26 N -0.09 -1.92 13.78 37.02 0.51 -1.41 16 27 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.24 1.28 8.06 -2.91 -0.02 1.26 16 31 H 0.41 8.59 8.05 -92.71 -0.75 7.84 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.76 7.92 -2.39 -0.02 1.74 16 34 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.02 0.80 7.99 -2.39 -0.02 0.78 16 38 H 0.36 19.51 6.50 -92.71 -0.60 18.90 16 39 H 0.24 15.57 6.77 -92.71 -0.63 14.94 16 40 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 1.93 7.65 -2.39 -0.02 1.91 16 Total: -1.00 -79.84 346.94 2.35 -77.49 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -0.15 Total: 26.60 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 5.89 Total: -8.48 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -5.38 Total: -134.57 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.07 Total: -16.22 kcal Atomic # 14 Polarization: 53.12 SS G_CDS: 2.05 Total: 55.17 kcal Total: -79.84 2.35 -77.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676925707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.067 kcal (2) G-P(sol) polarization free energy of solvation -79.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds