Wall clock time and date at job start Fri Apr 10 2020 17:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46903 * 109.47039 * 13.15343 * 3 2 1 5 5 C 1.48667 * 111.10865 * 285.41618 * 4 3 2 6 6 C 1.54377 * 104.67494 * 201.10060 * 5 4 3 7 7 C 1.54262 * 105.05763 * 23.76985 * 6 5 4 8 8 C 1.48562 * 110.99614 * 169.99969 * 4 3 2 9 9 H 1.08998 * 110.41348 * 40.14167 * 8 4 3 10 10 C 1.50698 * 110.40921 * 277.81477 * 8 4 3 11 11 O 1.21283 * 120.00472 * 1.65585 * 10 8 4 12 12 N 1.34777 * 119.99538 * 181.64922 * 10 8 4 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 H 1.08998 * 109.46700 * 305.00136 * 14 13 12 16 16 C 1.53004 * 109.47137 * 65.00035 * 14 13 12 17 17 C 1.52998 * 109.47023 * 185.00121 * 14 13 12 18 18 N 1.46510 * 109.46916 * 175.00193 * 17 14 13 19 19 C 1.36928 * 119.99875 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00523 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00202 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99601 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00423 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47104 * 90.00020 * 23 21 19 25 25 H 1.48501 * 109.47169 * 210.00080 * 23 21 19 26 26 H 1.48496 * 109.47202 * 330.00339 * 23 21 19 27 27 H 4.40890 * 5.52137 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.47116 * 253.15478 * 3 2 1 29 29 H 1.08997 * 109.46727 * 133.15272 * 3 2 1 30 30 H 1.09004 * 110.44301 * 82.25741 * 5 4 3 31 31 H 1.09006 * 110.30628 * 319.87317 * 5 4 3 32 32 H 1.09000 * 110.32012 * 264.87656 * 6 5 4 33 33 H 1.09002 * 110.41184 * 142.70911 * 6 5 4 34 34 H 1.08999 * 110.32378 * 241.10101 * 7 6 5 35 35 H 1.09002 * 110.40465 * 118.94429 * 7 6 5 36 36 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 37 37 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 38 38 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 39 39 H 1.09000 * 109.46939 * 300.00085 * 16 14 13 40 40 H 1.09003 * 109.46857 * 59.99834 * 16 14 13 41 41 H 1.08990 * 109.46949 * 180.02562 * 16 14 13 42 42 H 1.09007 * 109.47047 * 294.99607 * 17 14 13 43 43 H 1.09000 * 109.47450 * 54.99982 * 17 14 13 44 44 H 0.96994 * 119.99660 * 359.97438 * 18 17 14 45 45 H 0.97003 * 119.99727 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1363 -1.3478 -0.3152 5 6 2.9675 -2.2633 0.8439 6 6 3.9712 -3.4080 0.5876 7 6 5.0461 -2.7990 -0.3363 8 6 4.6015 -1.3377 -0.5603 9 1 5.1008 -0.6757 0.1472 10 6 4.8946 -0.9102 -1.9753 11 8 3.9851 -0.6060 -2.7178 12 7 6.1676 -0.8658 -2.4158 13 6 6.4522 -0.4560 -3.7932 14 6 7.9623 -0.4980 -4.0362 15 1 8.4678 0.1123 -3.2878 16 6 8.4553 -1.9428 -3.9337 17 6 8.2696 0.0479 -5.4320 18 7 9.7208 0.1193 -5.6198 19 6 10.2364 0.5806 -6.8015 20 1 9.5733 0.8914 -7.5953 21 6 11.6114 0.6488 -6.9793 22 7 12.4196 0.2695 -6.0121 23 14 12.3147 1.2773 -8.5915 24 1 12.5023 2.7482 -8.5098 25 1 13.6238 0.6249 -8.8483 26 1 11.3773 0.9587 -9.6982 27 1 -1.0498 -0.0003 -0.0003 28 1 3.0092 0.2986 0.9836 29 1 3.0089 0.7037 -0.7497 30 1 1.9493 -2.6510 0.8778 31 1 3.2095 -1.7464 1.7726 32 1 3.4751 -4.2426 0.0923 33 1 4.4199 -3.7371 1.5248 34 1 5.0776 -3.3349 -1.2850 35 1 6.0229 -2.8278 0.1466 36 1 6.8951 -1.1093 -1.8221 37 1 5.9539 -1.1354 -4.4848 38 1 6.0866 0.5583 -3.9534 39 1 8.2363 -2.3318 -2.9393 40 1 7.9497 -2.5532 -4.6820 41 1 9.5310 -1.9727 -4.1063 42 1 7.8380 -0.6130 -6.1838 43 1 7.8404 1.0446 -5.5349 44 1 10.3164 -0.1602 -4.9070 45 1 13.3804 0.3167 -6.1365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698753433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:37 Heat of formation + Delta-G solvation = 6.931026 kcal Electronic energy + Delta-G solvation = -23062.760737 eV Core-core repulsion = 19694.886601 eV Total energy + Delta-G solvation = -3367.874136 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.30097 -39.31105 -38.05166 -35.94900 -35.06236 -34.05902 -32.18834 -31.96671 -30.41928 -27.71230 -27.18245 -26.89580 -24.54467 -23.11753 -22.01514 -21.53753 -20.81286 -19.25878 -19.10890 -18.21317 -17.36868 -17.03601 -16.54893 -16.35707 -15.85824 -15.61746 -15.47690 -15.35691 -15.17457 -14.85810 -14.47482 -14.01960 -13.77914 -13.61515 -13.55119 -13.40405 -13.03202 -12.95079 -12.80674 -12.50476 -12.18158 -12.16435 -12.15363 -11.98223 -11.70275 -11.64648 -11.53793 -11.40744 -11.10346 -10.94327 -10.76947 -10.06056 -9.53568 -8.99171 -7.95493 -5.23526 1.47831 1.49058 1.57616 1.64259 1.70802 1.90358 2.13137 2.56717 3.13461 3.38111 3.43377 3.57077 3.70248 3.74788 3.97324 3.98920 4.06427 4.11907 4.25340 4.32198 4.36240 4.46806 4.54756 4.56572 4.70323 4.72377 4.80605 4.89694 4.95183 5.02146 5.06980 5.07671 5.13818 5.15463 5.24456 5.35326 5.43888 5.49903 5.51817 5.73061 5.88495 6.27462 6.61762 6.69619 7.31169 7.34340 8.09361 8.34192 9.27863 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032580 B = 0.002440 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.208853 B =11473.566977 C =12077.831393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.212 4.212 3 C 0.155 3.845 4 N -0.512 5.512 5 C 0.034 3.966 6 C -0.118 4.118 7 C -0.112 4.112 8 C 0.047 3.953 9 H 0.107 0.893 10 C 0.516 3.484 11 O -0.571 6.571 12 N -0.712 5.712 13 C 0.141 3.859 14 C -0.092 4.092 15 H 0.080 0.920 16 C -0.135 4.135 17 C 0.156 3.844 18 N -0.741 5.741 19 C -0.247 4.247 20 H 0.072 0.928 21 C -0.074 4.074 22 N -0.967 5.967 23 Si 0.973 3.027 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.272 1.272 27 H 0.246 0.754 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.414 0.586 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.042 0.958 42 H 0.019 0.981 43 H 0.018 0.982 44 H 0.377 0.623 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.566 -6.629 19.942 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.213 4.213 3 C 0.028 3.972 4 N -0.237 5.237 5 C -0.093 4.093 6 C -0.156 4.156 7 C -0.150 4.150 8 C -0.065 4.065 9 H 0.125 0.875 10 C 0.303 3.697 11 O -0.449 6.449 12 N -0.366 5.366 13 C 0.016 3.984 14 C -0.112 4.112 15 H 0.099 0.901 16 C -0.192 4.192 17 C 0.029 3.971 18 N -0.384 5.384 19 C -0.378 4.378 20 H 0.090 0.910 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.802 3.198 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.197 1.197 27 H 0.262 0.738 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.252 0.748 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.210 0.790 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.520 -6.521 18.758 27.846 hybrid contribution 1.273 0.709 -0.165 1.467 sum -18.247 -5.812 18.593 26.691 Atomic orbital electron populations 1.25667 0.96769 0.98377 1.00317 1.23202 0.94940 1.02026 1.01095 1.19136 0.85706 0.91283 1.01085 1.64953 1.12546 1.08568 1.37621 1.23251 1.00867 0.93867 0.91356 1.22296 0.95373 0.97295 1.00596 1.22336 1.00735 0.90856 1.01061 1.22682 0.90216 1.00731 0.92843 0.87536 1.20871 0.82173 0.76642 0.90040 1.90706 1.46094 1.49455 1.58642 1.45864 1.08057 1.68746 1.13919 1.21075 0.94481 0.99803 0.83059 1.21320 0.94235 0.98364 0.97240 0.90131 1.21721 1.00755 0.94516 1.02210 1.20731 0.84514 0.97095 0.94783 1.42496 1.01731 1.78120 1.16051 1.19613 0.90735 1.33967 0.93532 0.90995 1.25537 0.96471 1.03318 1.01335 1.69801 1.02471 1.55489 1.33993 0.85154 0.77433 0.77616 0.79645 1.21407 1.22007 1.19694 0.73758 0.90037 0.90113 0.90519 0.91750 0.91244 0.88234 0.91665 0.87072 0.74840 0.92284 0.92488 0.90227 0.93207 0.93880 0.96289 0.96411 0.79002 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 19.25 74.32 1.43 -2.12 16 2 C -0.21 -4.65 13.25 31.13 0.41 -4.23 16 3 C 0.15 3.07 5.13 84.50 0.43 3.51 16 4 N -0.51 -10.15 4.58 -871.71 -3.99 -14.15 16 5 C 0.03 0.45 6.11 86.43 0.53 0.98 16 6 C -0.12 -1.20 7.00 31.49 0.22 -0.98 16 7 C -0.11 -1.29 6.51 31.49 0.20 -1.08 16 8 C 0.05 0.76 2.67 44.32 0.12 0.88 16 9 H 0.11 1.19 7.99 -2.39 -0.02 1.17 16 10 C 0.52 12.42 6.81 87.66 0.60 13.02 16 11 O -0.57 -19.58 15.83 -3.04 -0.05 -19.63 16 12 N -0.71 -14.80 5.24 -463.05 -2.43 -17.23 16 13 C 0.14 3.73 5.06 86.38 0.44 4.17 16 14 C -0.09 -2.71 2.46 -10.79 -0.03 -2.74 16 15 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.13 -3.69 8.94 71.98 0.64 -3.05 16 17 C 0.16 6.17 5.65 86.38 0.49 6.66 16 18 N -0.74 -37.22 5.33 -343.43 -1.83 -39.05 16 19 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 20 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 21 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 22 N -0.97 -58.52 13.06 21.65 0.28 -58.24 16 23 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 27 H 0.25 2.48 7.80 -4.43 -0.03 2.45 16 28 H 0.08 1.16 7.77 -2.39 -0.02 1.14 16 29 H 0.08 1.90 7.35 -2.39 -0.02 1.88 16 30 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 0.65 7.75 -2.38 -0.02 0.63 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.97 7.85 -2.39 -0.02 0.95 16 35 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.41 6.06 7.65 -92.71 -0.71 5.35 16 37 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 1.58 7.18 -2.39 -0.02 1.56 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.04 1.43 7.18 -2.39 -0.02 1.41 16 42 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.38 19.74 6.85 -92.71 -0.64 19.10 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -74.78 372.20 0.43 -74.35 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.37 Total: 27.49 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 6.79 Total: -1.80 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -7.97 Total: -128.67 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -74.78 0.43 -74.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698753433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.276 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds